Wall clock time and date at job start Sun Mar 29 2020 21:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46895 * 2 1 4 4 H 1.08993 * 109.47297 * 304.24027 * 3 2 1 5 5 C 1.50706 * 109.47037 * 184.24265 * 3 2 1 6 6 H 1.07996 * 120.00010 * 240.00499 * 5 3 2 7 7 C 1.37878 * 119.99847 * 59.99750 * 5 3 2 8 8 N 1.31512 * 120.00323 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99660 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47357 * 60.00125 * 9 7 5 11 11 H 1.48498 * 109.46732 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46953 * 299.99838 * 9 7 5 13 13 N 1.46897 * 109.47395 * 64.24449 * 3 2 1 14 14 C 1.46898 * 111.00068 * 205.89953 * 13 3 2 15 15 C 1.53003 * 109.47210 * 174.69487 * 14 13 3 16 16 H 1.08999 * 110.05544 * 306.41791 * 15 14 13 17 17 C 1.54256 * 110.03405 * 185.00039 * 15 14 13 18 18 C 1.54891 * 104.31496 * 217.17535 * 17 15 14 19 19 C 1.54890 * 102.75108 * 37.86962 * 18 17 15 20 20 C 1.54088 * 110.15743 * 67.88023 * 15 14 13 21 21 H 1.09000 * 109.97461 * 359.85906 * 20 15 14 22 22 F 1.39897 * 110.11147 * 238.46059 * 20 15 14 23 23 H 1.09006 * 109.46979 * 174.92965 * 1 2 3 24 24 H 1.08993 * 109.47299 * 294.93481 * 1 2 3 25 25 H 1.09002 * 109.46886 * 54.93719 * 1 2 3 26 26 H 1.08997 * 109.47474 * 240.00096 * 2 1 3 27 27 H 1.08998 * 109.47321 * 119.99902 * 2 1 3 28 28 H 0.96997 * 120.00320 * 180.02562 * 8 7 5 29 29 H 1.00901 * 111.00226 * 81.93633 * 13 3 2 30 30 H 1.08995 * 109.46946 * 54.69295 * 14 13 3 31 31 H 1.09000 * 109.46573 * 294.69362 * 14 13 3 32 32 H 1.09000 * 110.49336 * 98.42500 * 17 15 14 33 33 H 1.09006 * 110.48599 * 335.91601 * 17 15 14 34 34 H 1.08997 * 110.76061 * 156.19372 * 18 17 15 35 35 H 1.09008 * 110.75118 * 279.55625 * 18 17 15 36 36 H 1.09004 * 110.48170 * 80.73833 * 19 18 17 37 37 H 1.08994 * 110.48940 * 203.25454 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6159 1.9778 -0.8495 5 6 3.5433 1.4439 -0.1051 6 1 4.1389 1.8918 0.6765 7 6 4.1584 0.8731 -1.1992 8 7 3.4332 0.3279 -2.1512 9 14 6.0219 0.8741 -1.3291 10 1 6.5992 0.1445 -0.1717 11 1 6.4304 0.2053 -2.5903 12 1 6.5173 2.2741 -1.3288 13 7 1.6358 2.1048 1.2474 14 6 1.5384 3.5590 1.0637 15 6 0.9897 4.1988 2.3406 16 1 0.0536 3.7192 2.6265 17 6 0.7640 5.7088 2.1203 18 6 1.1616 6.3564 3.4700 19 6 2.3810 5.5087 3.9099 20 6 2.0171 4.0718 3.4819 21 1 2.9064 3.5516 3.1262 22 9 1.4557 3.3786 4.5596 23 1 -0.3633 -1.0237 -0.0908 24 1 -0.3633 0.4332 0.9318 25 1 -0.3633 0.5904 -0.8412 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8659 -0.0740 -2.9207 29 1 2.2687 1.8769 1.9994 30 1 0.8685 3.7761 0.2317 31 1 2.5270 3.9651 0.8497 32 1 -0.2834 5.9092 1.8948 33 1 1.4032 6.0769 1.3177 34 1 1.4464 7.3990 3.3293 35 1 0.3505 6.2707 4.1932 36 1 3.2828 5.8427 3.3967 37 1 2.5149 5.5647 4.9901 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152530.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:57 Heat of formation + Delta-G solvation = -96.893542 kcal Electronic energy + Delta-G solvation = -16675.995040 eV Core-core repulsion = 13979.452430 eV Total energy + Delta-G solvation = -2696.542610 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.53148 -39.16626 -37.45799 -34.42176 -33.06285 -30.38283 -29.08348 -27.90083 -25.10280 -23.87796 -21.85570 -21.23777 -20.74187 -18.82472 -17.63388 -16.92237 -16.70396 -16.01028 -15.80341 -15.42418 -14.94915 -14.59160 -14.45065 -13.96285 -13.77581 -13.54625 -13.16396 -13.10753 -12.86795 -12.55304 -12.29501 -12.23090 -12.01141 -11.92891 -11.56124 -11.54409 -11.46934 -11.37056 -11.17306 -10.99283 -10.47616 -9.06747 -8.06701 -6.29469 1.38103 1.39165 1.46564 2.38864 3.12686 3.42860 3.49169 3.51191 3.89772 4.03091 4.34610 4.40037 4.50299 4.55032 4.59414 4.66273 4.74784 4.77746 4.89667 4.91547 4.94135 5.05892 5.16981 5.17632 5.24015 5.39760 5.40883 5.47898 5.51551 5.62943 5.75859 6.08386 6.17639 6.37140 6.79010 6.98182 7.42068 8.89876 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.025513 B = 0.007472 C = 0.006530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.199349 B = 3746.479873 C = 4286.981529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.103 4.103 3 C 0.222 3.778 4 H 0.001 0.999 5 C -0.562 4.562 6 H 0.049 0.951 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.950 3.050 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.273 1.273 13 N -0.685 5.685 14 C 0.078 3.922 15 C -0.106 4.106 16 H 0.080 0.920 17 C -0.116 4.116 18 C -0.116 4.116 19 C -0.146 4.146 20 C 0.082 3.918 21 H 0.070 0.930 22 F -0.225 7.225 23 H 0.044 0.956 24 H 0.055 0.945 25 H 0.032 0.968 26 H 0.062 0.938 27 H 0.025 0.975 28 H 0.263 0.737 29 H 0.326 0.674 30 H 0.059 0.941 31 H 0.018 0.982 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.363 10.246 8.974 14.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.142 4.142 3 C 0.113 3.887 4 H 0.019 0.981 5 C -0.601 4.601 6 H 0.068 0.932 7 C -0.180 4.180 8 N -0.549 5.549 9 Si 0.776 3.224 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.198 1.198 13 N -0.314 5.314 14 C -0.052 4.052 15 C -0.125 4.125 16 H 0.099 0.901 17 C -0.154 4.154 18 C -0.153 4.153 19 C -0.184 4.184 20 C 0.045 3.955 21 H 0.088 0.912 22 F -0.206 7.206 23 H 0.063 0.937 24 H 0.074 0.926 25 H 0.051 0.949 26 H 0.080 0.920 27 H 0.044 0.956 28 H 0.072 0.928 29 H 0.142 0.858 30 H 0.077 0.923 31 H 0.036 0.964 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.048 10.021 8.705 13.877 hybrid contribution 2.005 -0.274 -0.477 2.079 sum -2.043 9.747 8.228 12.918 Atomic orbital electron populations 1.21542 0.96402 0.99564 1.00571 1.21373 0.94422 0.98494 0.99933 1.18935 0.91598 0.91483 0.86704 0.98088 1.22131 0.93966 1.38149 1.05886 0.93232 1.25671 1.02232 0.94679 0.95387 1.69995 1.36602 1.38425 1.09915 0.85739 0.80917 0.78319 0.77427 1.19839 1.20824 1.19804 1.60847 1.54744 1.07679 1.08086 1.21826 0.98178 0.88596 0.96617 1.22404 0.98628 0.97741 0.93736 0.90142 1.22395 1.02548 0.91949 0.98470 1.22486 0.97005 0.99640 0.96199 1.22982 1.00222 0.92516 1.02682 1.22455 0.95832 0.93362 0.83804 0.91213 1.92767 1.87477 1.81847 1.58543 0.93707 0.92627 0.94926 0.91997 0.95588 0.92809 0.85798 0.92284 0.96373 0.90112 0.90971 0.89063 0.90921 0.89234 0.89720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.12 9.73 71.98 0.70 -4.42 16 2 C -0.10 -5.09 5.45 30.59 0.17 -4.92 16 3 C 0.22 11.18 1.98 44.17 0.09 11.27 16 4 H 0.00 0.07 7.70 -2.39 -0.02 0.05 16 5 C -0.56 -30.55 8.47 25.60 0.22 -30.34 16 6 H 0.05 2.65 7.73 -2.91 -0.02 2.62 16 7 C 0.02 1.13 5.29 84.66 0.45 1.57 16 8 N -0.91 -52.16 11.30 21.45 0.24 -51.92 16 9 Si 0.95 43.20 29.54 68.60 2.03 45.23 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 13 N -0.68 -29.04 5.73 -495.45 -2.84 -31.87 16 14 C 0.08 2.84 4.62 86.30 0.40 3.24 16 15 C -0.11 -3.07 3.01 -10.00 -0.03 -3.10 16 16 H 0.08 2.50 8.02 -2.39 -0.02 2.48 16 17 C -0.12 -2.56 6.35 31.67 0.20 -2.35 16 18 C -0.12 -2.14 6.91 31.89 0.22 -1.92 16 19 C -0.15 -3.11 6.62 31.67 0.21 -2.90 16 20 C 0.08 2.32 3.93 31.39 0.12 2.45 16 21 H 0.07 2.17 6.96 -2.39 -0.02 2.15 16 22 F -0.23 -7.25 17.06 44.97 0.77 -6.49 16 23 H 0.04 1.65 8.14 -2.38 -0.02 1.64 16 24 H 0.05 2.20 7.87 -2.39 -0.02 2.18 16 25 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.06 3.40 5.97 -2.39 -0.01 3.39 16 27 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 29 H 0.33 13.88 7.29 -89.69 -0.65 13.23 16 30 H 0.06 2.22 7.92 -2.39 -0.02 2.20 16 31 H 0.02 0.70 8.11 -2.39 -0.02 0.68 16 32 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.07 1.59 7.85 -2.38 -0.02 1.57 16 34 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.08 1.66 8.11 -2.39 -0.02 1.64 16 Total: -1.00 -58.69 296.16 3.32 -55.37 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 0.37 Total: 21.10 kcal Atomic # 6 Polarization: -34.17 SS G_CDS: 2.74 Total: -31.43 kcal Atomic # 7 Polarization: -81.19 SS G_CDS: -2.60 Total: -83.79 kcal Atomic # 9 Polarization: -7.25 SS G_CDS: 0.77 Total: -6.49 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -58.69 3.32 -55.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152530.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.519 kcal (2) G-P(sol) polarization free energy of solvation -58.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds