Wall clock time and date at job start Sun Mar 29 2020 21:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47145 * 2 1 4 4 H 1.09007 * 109.46969 * 54.99715 * 3 2 1 5 5 C 1.50699 * 109.47346 * 174.99928 * 3 2 1 6 6 H 1.07999 * 119.99964 * 119.99709 * 5 3 2 7 7 C 1.37875 * 119.99773 * 299.99506 * 5 3 2 8 8 N 1.31518 * 119.99859 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 120.00118 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.47242 * 89.99865 * 9 7 5 11 11 H 1.48503 * 109.47161 * 209.99449 * 9 7 5 12 12 H 1.48494 * 109.47223 * 329.99359 * 9 7 5 13 13 N 1.46901 * 109.46994 * 295.00089 * 3 2 1 14 14 C 1.46847 * 111.00144 * 175.00056 * 13 3 2 15 15 C 1.53044 * 109.51335 * 185.83239 * 14 13 3 16 16 C 1.53117 * 109.27792 * 300.82256 * 15 14 13 17 17 C 1.53000 * 109.52114 * 177.56078 * 16 15 14 18 18 F 1.39903 * 109.52493 * 297.75199 * 16 15 14 19 19 C 1.53127 * 109.15989 * 57.65607 * 16 15 14 20 20 C 1.46830 * 110.98168 * 299.21474 * 13 3 2 21 21 H 1.09003 * 109.47311 * 299.99759 * 1 2 3 22 22 H 1.08999 * 109.47411 * 60.00273 * 1 2 3 23 23 H 1.09002 * 109.47231 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47492 * 239.99677 * 2 1 3 25 25 H 1.09004 * 109.47300 * 119.99249 * 2 1 3 26 26 H 0.96999 * 119.99853 * 180.02562 * 8 7 5 27 27 H 1.09002 * 109.46448 * 65.81961 * 14 13 3 28 28 H 1.08994 * 109.45958 * 305.84326 * 14 13 3 29 29 H 1.09001 * 109.49858 * 60.76701 * 15 14 13 30 30 H 1.09002 * 109.49779 * 180.84687 * 15 14 13 31 31 H 1.09001 * 109.46791 * 60.00306 * 17 16 15 32 32 H 1.08996 * 109.46798 * 179.97438 * 17 16 15 33 33 H 1.08997 * 109.47078 * 299.99772 * 17 16 15 34 34 H 1.08997 * 109.50037 * 62.28538 * 19 16 15 35 35 H 1.09000 * 109.49970 * 182.40199 * 19 16 15 36 36 H 1.08995 * 109.46742 * 54.13906 * 20 13 3 37 37 H 1.09004 * 109.45381 * 294.16241 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8889 -0.6523 7 6 4.1432 0.8786 1.2280 8 7 5.4539 0.8797 1.3359 9 14 3.0962 0.1091 2.5702 10 1 2.8755 -1.3270 2.2636 11 1 3.7935 0.2350 3.8752 12 1 1.7876 0.8075 2.6388 13 7 1.6513 2.0993 -1.2552 14 6 2.0206 3.5205 -1.2419 15 6 1.4734 4.2026 -2.4979 16 6 2.0525 3.5171 -3.7385 17 6 1.4622 4.1551 -4.9976 18 9 3.4438 3.6634 -3.7470 19 6 1.6948 2.0286 -3.7032 20 6 2.2355 1.4094 -2.4123 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8901 26 1 5.8770 0.4813 2.1126 27 1 3.1064 3.6135 -1.2219 28 1 1.5989 3.9969 -0.3569 29 1 0.3865 4.1221 -2.5114 30 1 1.7605 5.2542 -2.4951 31 1 1.7126 5.2157 -5.0190 32 1 1.8753 3.6668 -5.8802 33 1 0.3786 4.0376 -4.9906 34 1 0.6114 1.9139 -3.7358 35 1 2.1405 1.5268 -4.5621 36 1 1.9701 0.3529 -2.3774 37 1 3.3203 1.5125 -2.3867 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165170.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:11 Heat of formation + Delta-G solvation = -55.741083 kcal Electronic energy + Delta-G solvation = -17455.171720 eV Core-core repulsion = 14760.413615 eV Total energy + Delta-G solvation = -2694.758105 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -47.24840 -38.29867 -34.97330 -32.18977 -31.65067 -30.38034 -28.21624 -26.19556 -23.00162 -22.70026 -21.67603 -19.76404 -18.94002 -16.70629 -15.95456 -15.06260 -14.91194 -14.76664 -14.24484 -14.19384 -13.55008 -12.86298 -12.59507 -12.58768 -12.30924 -12.02455 -12.00337 -11.62974 -11.55603 -11.42072 -11.23260 -10.89638 -10.67105 -10.60340 -10.16820 -9.91234 -9.75274 -9.54192 -9.41844 -9.18682 -8.54679 -7.14520 -6.09080 -4.09760 3.26298 3.37332 3.39492 4.38762 4.77153 4.78302 4.84482 5.00949 5.14152 5.21455 5.59774 5.69510 5.74944 5.84968 5.93263 5.95951 6.02174 6.05091 6.15999 6.20200 6.22388 6.40101 6.40893 6.60332 6.68204 6.74964 6.82270 6.89731 6.94725 7.10548 7.25447 7.58501 8.10777 8.16093 8.47896 8.94859 9.53977 11.03797 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.034558 B = 0.009199 C = 0.008108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.045912 B = 3042.959928 C = 3452.399508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.123 4.123 3 C 0.181 3.819 4 H 0.039 0.961 5 C -0.544 4.544 6 H 0.077 0.923 7 C 0.073 3.927 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.279 1.279 11 H -0.299 1.299 12 H -0.264 1.264 13 N -0.526 5.526 14 C 0.060 3.940 15 C -0.132 4.132 16 C 0.115 3.885 17 C -0.169 4.169 18 F -0.209 7.209 19 C -0.133 4.133 20 C 0.055 3.945 21 H 0.041 0.959 22 H 0.061 0.939 23 H 0.033 0.967 24 H 0.060 0.940 25 H 0.047 0.953 26 H 0.263 0.737 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.043 3.414 -8.525 13.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.161 4.161 3 C 0.074 3.926 4 H 0.056 0.944 5 C -0.583 4.583 6 H 0.095 0.905 7 C -0.130 4.130 8 N -0.535 5.535 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.226 1.226 12 H -0.189 1.189 13 N -0.250 5.250 14 C -0.069 4.069 15 C -0.170 4.170 16 C 0.096 3.904 17 C -0.226 4.226 18 F -0.190 7.190 19 C -0.171 4.171 20 C -0.073 4.073 21 H 0.061 0.939 22 H 0.080 0.920 23 H 0.052 0.948 24 H 0.078 0.922 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.367 3.343 -8.452 13.787 hybrid contribution 0.662 -0.466 0.895 1.207 sum -9.705 2.878 -7.557 12.632 Atomic orbital electron populations 1.21735 0.97373 0.99323 1.01634 1.21967 0.94039 0.99399 1.00700 1.19701 0.94590 0.90443 0.87888 0.94363 1.21651 0.90645 1.38857 1.07110 0.90471 1.24998 0.94720 0.95395 0.97853 1.69927 1.08837 1.45083 1.29686 0.86855 0.80703 0.79790 0.80885 1.20595 1.22634 1.18885 1.62358 1.57886 1.01349 1.03365 1.21842 0.99649 0.89646 0.95764 1.22186 1.01451 0.99029 0.94383 1.20967 0.76065 0.97140 0.96203 1.22346 1.01779 1.01334 0.97190 1.92844 1.31586 1.96936 1.97630 1.22204 1.02236 0.93514 0.99190 1.21938 0.98504 0.98079 0.88802 0.93944 0.91980 0.94824 0.92178 0.93506 0.92710 0.93265 0.91407 0.90213 0.91420 0.91882 0.91869 0.90952 0.90269 0.91470 0.90792 0.93190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.80 37.15 0.36 -2.21 16 2 C -0.12 -2.65 4.72 -26.73 -0.13 -2.78 16 3 C 0.18 4.21 1.34 -68.86 -0.09 4.12 16 4 H 0.04 0.94 7.14 -51.93 -0.37 0.56 16 5 C -0.54 -15.01 7.77 -34.44 -0.27 -15.28 16 6 H 0.08 2.36 6.08 -52.49 -0.32 2.04 16 7 C 0.07 2.09 5.45 -17.82 -0.10 2.00 16 8 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 9 Si 0.89 21.98 24.41 -169.99 -4.15 17.83 16 10 H -0.28 -6.76 6.83 56.52 0.39 -6.37 16 11 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 12 H -0.26 -6.25 6.53 56.52 0.37 -5.89 16 13 N -0.53 -10.57 4.10 -228.09 -0.93 -11.51 16 14 C 0.06 1.15 5.01 -3.83 -0.02 1.13 16 15 C -0.13 -2.01 5.16 -26.65 -0.14 -2.14 16 16 C 0.11 1.74 1.25 -90.49 -0.11 1.62 16 17 C -0.17 -1.94 8.94 37.16 0.33 -1.61 16 18 F -0.21 -3.91 15.97 2.25 0.04 -3.87 16 19 C -0.13 -2.03 5.16 -26.65 -0.14 -2.17 16 20 C 0.06 1.06 4.69 -3.84 -0.02 1.04 16 21 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.06 1.06 7.75 -51.93 -0.40 0.65 16 23 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 1.27 6.05 -51.93 -0.31 0.96 16 25 H 0.05 1.08 3.21 -51.93 -0.17 0.91 16 26 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 27 H 0.05 1.11 6.70 -51.93 -0.35 0.76 16 28 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 1.40 5.93 -51.93 -0.31 1.10 16 37 H 0.05 1.14 6.36 -51.93 -0.33 0.81 16 LS Contribution 277.07 15.07 4.18 4.18 Total: -1.00 -29.83 277.07 -6.38 -36.21 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -5.97 Total: 0.21 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: -0.31 Total: -16.28 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: -0.16 Total: -38.27 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.04 Total: -3.87 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.15 Total: 17.83 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.83 -6.38 -36.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165170.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.530 kcal (2) G-P(sol) polarization free energy of solvation -29.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds