Wall clock time and date at job start Sun Mar 29 2020 21:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47145 * 2 1 4 4 H 1.09007 * 109.46969 * 54.99715 * 3 2 1 5 5 C 1.50699 * 109.47346 * 174.99928 * 3 2 1 6 6 H 1.07999 * 119.99964 * 119.99709 * 5 3 2 7 7 C 1.37875 * 119.99773 * 299.99506 * 5 3 2 8 8 N 1.31518 * 119.99859 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 120.00118 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.47242 * 89.99865 * 9 7 5 11 11 H 1.48503 * 109.47161 * 209.99449 * 9 7 5 12 12 H 1.48494 * 109.47223 * 329.99359 * 9 7 5 13 13 N 1.46901 * 109.46994 * 295.00089 * 3 2 1 14 14 C 1.46847 * 111.00144 * 175.00056 * 13 3 2 15 15 C 1.53044 * 109.51335 * 185.83239 * 14 13 3 16 16 C 1.53117 * 109.27792 * 300.82256 * 15 14 13 17 17 C 1.53000 * 109.52114 * 177.56078 * 16 15 14 18 18 F 1.39903 * 109.52493 * 297.75199 * 16 15 14 19 19 C 1.53127 * 109.15989 * 57.65607 * 16 15 14 20 20 C 1.46830 * 110.98168 * 299.21474 * 13 3 2 21 21 H 1.09003 * 109.47311 * 299.99759 * 1 2 3 22 22 H 1.08999 * 109.47411 * 60.00273 * 1 2 3 23 23 H 1.09002 * 109.47231 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47492 * 239.99677 * 2 1 3 25 25 H 1.09004 * 109.47300 * 119.99249 * 2 1 3 26 26 H 0.96999 * 119.99853 * 180.02562 * 8 7 5 27 27 H 1.09002 * 109.46448 * 65.81961 * 14 13 3 28 28 H 1.08994 * 109.45958 * 305.84326 * 14 13 3 29 29 H 1.09001 * 109.49858 * 60.76701 * 15 14 13 30 30 H 1.09002 * 109.49779 * 180.84687 * 15 14 13 31 31 H 1.09001 * 109.46791 * 60.00306 * 17 16 15 32 32 H 1.08996 * 109.46798 * 179.97438 * 17 16 15 33 33 H 1.08997 * 109.47078 * 299.99772 * 17 16 15 34 34 H 1.08997 * 109.50037 * 62.28538 * 19 16 15 35 35 H 1.09000 * 109.49970 * 182.40199 * 19 16 15 36 36 H 1.08995 * 109.46742 * 54.13906 * 20 13 3 37 37 H 1.09004 * 109.45381 * 294.16241 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8889 -0.6523 7 6 4.1432 0.8786 1.2280 8 7 5.4539 0.8797 1.3359 9 14 3.0962 0.1091 2.5702 10 1 2.8755 -1.3270 2.2636 11 1 3.7935 0.2350 3.8752 12 1 1.7876 0.8075 2.6388 13 7 1.6513 2.0993 -1.2552 14 6 2.0206 3.5205 -1.2419 15 6 1.4734 4.2026 -2.4979 16 6 2.0525 3.5171 -3.7385 17 6 1.4622 4.1551 -4.9976 18 9 3.4438 3.6634 -3.7470 19 6 1.6948 2.0286 -3.7032 20 6 2.2355 1.4094 -2.4123 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8901 26 1 5.8770 0.4813 2.1126 27 1 3.1064 3.6135 -1.2219 28 1 1.5989 3.9969 -0.3569 29 1 0.3865 4.1221 -2.5114 30 1 1.7605 5.2542 -2.4951 31 1 1.7126 5.2157 -5.0190 32 1 1.8753 3.6668 -5.8802 33 1 0.3786 4.0376 -4.9906 34 1 0.6114 1.9139 -3.7358 35 1 2.1405 1.5268 -4.5621 36 1 1.9701 0.3529 -2.3774 37 1 3.3203 1.5125 -2.3867 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165170.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:11 Heat of formation + Delta-G solvation = -75.814131 kcal Electronic energy + Delta-G solvation = -17456.042153 eV Core-core repulsion = 14760.413615 eV Total energy + Delta-G solvation = -2695.628538 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.59667 -39.91233 -36.50742 -34.23039 -33.15391 -31.79725 -29.72210 -27.85243 -24.63490 -24.26888 -23.12799 -21.35734 -20.55610 -18.69971 -17.59124 -16.52330 -16.36051 -16.18083 -15.93598 -15.78125 -15.19386 -14.64842 -14.21045 -13.93381 -13.78099 -13.56000 -13.20558 -13.08290 -12.98895 -12.80910 -12.74089 -12.47735 -12.26445 -12.07465 -11.98266 -11.62012 -11.41721 -11.24259 -11.01037 -10.90092 -10.68035 -8.95462 -8.33221 -6.38058 1.27923 1.33294 1.44448 2.28763 3.01714 3.22552 3.59255 3.71290 3.82362 3.92459 4.25831 4.34786 4.43151 4.54582 4.56999 4.66764 4.69244 4.72471 4.77149 4.90549 4.96030 5.00163 5.08532 5.16488 5.20984 5.23803 5.25167 5.31582 5.43852 5.48121 5.54519 5.63532 6.13772 6.37092 6.46992 6.71222 7.29904 8.83889 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.034558 B = 0.009199 C = 0.008108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.045912 B = 3042.959928 C = 3452.399508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.124 4.124 3 C 0.183 3.817 4 H 0.033 0.967 5 C -0.539 4.539 6 H 0.027 0.973 7 C 0.010 3.990 8 N -0.951 5.951 9 Si 0.953 3.047 10 H -0.266 1.266 11 H -0.301 1.301 12 H -0.242 1.242 13 N -0.508 5.508 14 C 0.057 3.943 15 C -0.123 4.123 16 C 0.099 3.901 17 C -0.159 4.159 18 F -0.238 7.238 19 C -0.125 4.125 20 C 0.057 3.943 21 H 0.045 0.955 22 H 0.073 0.927 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.033 0.967 26 H 0.264 0.736 27 H -0.001 1.001 28 H 0.070 0.930 29 H 0.110 0.890 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.079 0.921 36 H 0.077 0.923 37 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.790 3.264 -9.337 16.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.161 4.161 3 C 0.074 3.926 4 H 0.051 0.949 5 C -0.578 4.578 6 H 0.045 0.955 7 C -0.187 4.187 8 N -0.592 5.592 9 Si 0.780 3.220 10 H -0.192 1.192 11 H -0.230 1.230 12 H -0.165 1.165 13 N -0.231 5.231 14 C -0.072 4.072 15 C -0.161 4.161 16 C 0.081 3.919 17 C -0.216 4.216 18 F -0.219 7.219 19 C -0.163 4.163 20 C -0.072 4.072 21 H 0.064 0.936 22 H 0.092 0.908 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.052 0.948 26 H 0.073 0.927 27 H 0.018 0.982 28 H 0.088 0.912 29 H 0.129 0.871 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.129 0.871 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges -14.139 3.204 -9.290 17.219 hybrid contribution 1.921 -0.364 1.083 2.235 sum -12.218 2.840 -8.208 14.990 Atomic orbital electron populations 1.21648 0.93799 1.01254 1.02385 1.21885 0.97137 0.97167 0.99942 1.19621 0.91190 0.92341 0.89407 0.94929 1.21908 0.93131 1.37265 1.05455 0.95512 1.25925 0.95853 0.96249 1.00667 1.70096 1.11085 1.47130 1.30847 0.85778 0.79571 0.79542 0.77096 1.19193 1.22950 1.16545 1.62437 1.56710 1.01593 1.02363 1.21902 0.96879 0.89750 0.98660 1.22165 1.02927 0.99138 0.91860 1.21390 0.74695 0.97479 0.98308 1.22281 1.03169 1.01328 0.94832 1.92800 1.34212 1.97048 1.97830 1.22192 1.03905 0.93452 0.96762 1.21945 0.95597 0.98833 0.90810 0.93581 0.90838 0.92341 0.92477 0.94846 0.92701 0.98240 0.91157 0.87146 0.90088 0.91204 0.91234 0.88162 0.87143 0.90217 0.90509 0.98363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 9.80 71.98 0.71 -3.56 16 2 C -0.12 -5.11 4.72 30.59 0.14 -4.96 16 3 C 0.18 8.50 1.34 44.17 0.06 8.56 16 4 H 0.03 1.57 7.14 -2.38 -0.02 1.55 16 5 C -0.54 -31.24 7.77 25.60 0.20 -31.04 16 6 H 0.03 1.78 6.08 -2.91 -0.02 1.77 16 7 C 0.01 0.62 5.45 84.65 0.46 1.08 16 8 N -0.95 -61.32 13.96 21.45 0.30 -61.02 16 9 Si 0.95 45.75 24.41 68.60 1.67 47.42 16 10 H -0.27 -12.13 6.83 99.48 0.68 -11.45 16 11 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 12 H -0.24 -10.64 6.53 99.48 0.65 -9.99 16 13 N -0.51 -20.21 4.10 -875.53 -3.59 -23.79 16 14 C 0.06 2.21 5.01 86.33 0.43 2.64 16 15 C -0.12 -3.47 5.16 30.65 0.16 -3.31 16 16 C 0.10 2.82 1.25 -10.71 -0.01 2.81 16 17 C -0.16 -3.03 8.94 71.98 0.64 -2.39 16 18 F -0.24 -9.09 15.97 44.97 0.72 -8.37 16 19 C -0.13 -3.54 5.16 30.65 0.16 -3.38 16 20 C 0.06 2.19 4.69 86.33 0.41 2.60 16 21 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.07 2.18 7.75 -2.39 -0.02 2.16 16 23 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 24 H 0.06 2.36 6.05 -2.39 -0.01 2.35 16 25 H 0.03 1.47 3.21 -2.38 -0.01 1.46 16 26 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 27 H 0.00 -0.04 6.70 -2.39 -0.02 -0.06 16 28 H 0.07 2.64 8.08 -2.39 -0.02 2.62 16 29 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.08 2.88 5.93 -2.39 -0.01 2.87 16 37 H 0.00 -0.10 6.36 -2.38 -0.02 -0.12 16 Total: -1.00 -69.69 277.07 3.41 -66.28 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 0.95 Total: 10.45 kcal Atomic # 6 Polarization: -34.32 SS G_CDS: 3.35 Total: -30.96 kcal Atomic # 7 Polarization: -81.53 SS G_CDS: -3.29 Total: -84.81 kcal Atomic # 9 Polarization: -9.09 SS G_CDS: 0.72 Total: -8.37 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.67 Total: 47.42 kcal Total: -69.69 3.41 -66.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165170.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.532 kcal (2) G-P(sol) polarization free energy of solvation -69.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds