Wall clock time and date at job start Sun Mar 29 2020 21:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47211 * 2 1 4 4 H 1.09005 * 109.47325 * 182.75576 * 3 2 1 5 5 C 1.50707 * 109.46852 * 62.76236 * 3 2 1 6 6 H 1.07995 * 119.99657 * 242.67891 * 5 3 2 7 7 C 1.37877 * 119.99668 * 62.67866 * 5 3 2 8 8 N 1.31517 * 119.99508 * 195.11365 * 7 5 3 9 9 Si 1.86800 * 120.00318 * 15.12162 * 7 5 3 10 10 H 1.48508 * 109.47104 * 95.05625 * 9 7 5 11 11 H 1.48496 * 109.46859 * 215.05111 * 9 7 5 12 12 H 1.48497 * 109.47052 * 335.05786 * 9 7 5 13 13 N 1.46895 * 109.47600 * 302.76341 * 3 2 1 14 14 C 1.46852 * 110.99553 * 305.22309 * 13 3 2 15 15 C 1.53039 * 109.51942 * 174.15645 * 14 13 3 16 16 C 1.53121 * 109.27685 * 59.18310 * 15 14 13 17 17 C 1.52998 * 109.52293 * 182.43730 * 16 15 14 18 18 F 1.39907 * 109.52395 * 62.24918 * 16 15 14 19 19 C 1.53118 * 109.16279 * 302.34461 * 16 15 14 20 20 C 1.46847 * 111.00356 * 181.01860 * 13 3 2 21 21 H 1.08998 * 109.46989 * 63.90275 * 1 2 3 22 22 H 1.08995 * 109.47010 * 183.89961 * 1 2 3 23 23 H 1.09000 * 109.46665 * 303.90073 * 1 2 3 24 24 H 1.09010 * 109.47216 * 240.00493 * 2 1 3 25 25 H 1.08997 * 109.47364 * 120.00885 * 2 1 3 26 26 H 0.97000 * 119.99509 * 180.02562 * 8 7 5 27 27 H 1.08995 * 109.46618 * 294.17484 * 14 13 3 28 28 H 1.09001 * 109.45977 * 54.14948 * 14 13 3 29 29 H 1.08994 * 109.50796 * 299.23912 * 15 14 13 30 30 H 1.09006 * 109.53308 * 179.13830 * 15 14 13 31 31 H 1.09003 * 109.47392 * 179.68620 * 17 16 15 32 32 H 1.09006 * 109.47233 * 299.67961 * 17 16 15 33 33 H 1.08996 * 109.47299 * 59.67907 * 17 16 15 34 34 H 1.09004 * 109.50022 * 297.71239 * 19 16 15 35 35 H 1.08996 * 109.53797 * 177.61856 * 19 16 15 36 36 H 1.08999 * 109.45984 * 305.85368 * 20 13 3 37 37 H 1.09002 * 109.46250 * 65.81769 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1289 1.4429 -0.0494 5 6 1.5943 2.1328 1.2633 6 1 0.9347 2.9862 1.2084 7 6 2.0287 1.6748 2.4891 8 7 1.4252 2.0682 3.5895 9 14 3.4744 0.4959 2.5870 10 1 4.7228 1.2627 2.8297 11 1 3.2574 -0.4619 3.7009 12 1 3.5922 -0.2500 1.3084 13 7 1.4967 2.1541 -1.1646 14 6 1.8070 1.4397 -2.4095 15 6 1.1049 2.1277 -3.5825 16 6 1.5795 3.5806 -3.6739 17 6 0.8361 4.2910 -4.8068 18 9 2.9553 3.6080 -3.9265 19 6 1.2886 4.2888 -2.3479 20 6 1.9852 3.5381 -1.2107 21 1 -0.3633 0.4521 -0.9229 22 1 -0.3633 -1.0252 0.0699 23 1 -0.3633 0.5732 0.8530 24 1 1.8934 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 1.7310 1.7463 4.4519 27 1 2.8842 1.4492 -2.5749 28 1 1.4604 0.4091 -2.3329 29 1 0.0267 2.1063 -3.4245 30 1 1.3474 1.6067 -4.5088 31 1 1.1705 5.3267 -4.8676 32 1 1.0439 3.7863 -5.7504 33 1 -0.2356 4.2662 -4.6099 34 1 0.2131 4.3015 -2.1704 35 1 1.6622 5.3118 -2.3913 36 1 1.7683 4.0316 -0.2634 37 1 3.0618 3.5377 -1.3817 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165171.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:13 Heat of formation + Delta-G solvation = -54.536255 kcal Electronic energy + Delta-G solvation = -17386.650329 eV Core-core repulsion = 14691.944470 eV Total energy + Delta-G solvation = -2694.705860 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.41009 -38.33733 -35.01105 -32.32865 -31.43896 -30.44858 -28.06996 -26.16948 -23.48939 -22.43555 -21.78831 -19.71030 -18.88301 -16.46667 -15.99603 -15.19647 -15.07185 -14.87245 -14.26404 -13.90769 -13.48339 -13.31863 -12.69983 -12.59075 -12.47138 -12.09871 -11.83795 -11.64890 -11.53976 -11.44558 -11.00294 -10.82432 -10.74514 -10.48604 -10.09133 -10.04072 -9.88068 -9.70170 -9.26241 -8.92900 -8.42524 -7.28431 -6.08323 -4.00750 3.27824 3.37655 3.40905 4.43066 4.66083 4.69916 4.76303 4.93277 5.02000 5.24596 5.50857 5.63023 5.65885 5.77392 5.83312 5.93849 6.05151 6.08873 6.12461 6.21454 6.27252 6.34712 6.41766 6.50634 6.65286 6.73870 6.80641 6.99336 7.10637 7.20087 7.51936 7.71910 7.98720 8.11407 8.67755 9.02250 9.58046 11.04359 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.037795 B = 0.008316 C = 0.007995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.666922 B = 3366.127316 C = 3501.197220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.118 4.118 3 C 0.190 3.810 4 H -0.009 1.009 5 C -0.502 4.502 6 H 0.081 0.919 7 C 0.076 3.924 8 N -0.892 5.892 9 Si 0.858 3.142 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.254 1.254 13 N -0.518 5.518 14 C 0.046 3.954 15 C -0.130 4.130 16 C 0.113 3.887 17 C -0.169 4.169 18 F -0.214 7.214 19 C -0.133 4.133 20 C 0.062 3.938 21 H 0.049 0.951 22 H 0.020 0.980 23 H 0.071 0.929 24 H 0.028 0.972 25 H 0.054 0.946 26 H 0.262 0.738 27 H 0.025 0.975 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.923 0.873 -13.586 13.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.156 4.156 3 C 0.083 3.917 4 H 0.009 0.991 5 C -0.540 4.540 6 H 0.099 0.901 7 C -0.126 4.126 8 N -0.530 5.530 9 Si 0.685 3.315 10 H -0.210 1.210 11 H -0.213 1.213 12 H -0.179 1.179 13 N -0.243 5.243 14 C -0.083 4.083 15 C -0.168 4.168 16 C 0.094 3.906 17 C -0.226 4.226 18 F -0.195 7.195 19 C -0.171 4.171 20 C -0.067 4.067 21 H 0.068 0.932 22 H 0.039 0.961 23 H 0.090 0.910 24 H 0.047 0.953 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.043 0.957 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.113 0.887 37 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -1.404 0.868 -13.329 13.431 hybrid contribution 1.852 -0.690 0.120 1.979 sum 0.448 0.178 -13.210 13.218 Atomic orbital electron populations 1.21493 0.95609 0.98311 1.02865 1.21960 0.97140 0.97756 0.98712 1.19619 0.91908 0.90886 0.89274 0.99136 1.20821 1.29814 1.15627 0.87767 0.90145 1.24838 0.96249 0.95813 0.95701 1.69965 1.39276 1.45682 0.98036 0.87309 0.84106 0.81742 0.78321 1.20961 1.21307 1.17881 1.61905 1.59652 1.01298 1.01431 1.22107 0.97247 0.98626 0.90317 1.22143 1.02186 0.93737 0.98780 1.21036 0.76069 0.97319 0.96130 1.22338 1.01287 1.00987 0.98014 1.92808 1.33535 1.97700 1.95460 1.22200 1.02934 0.98695 0.93275 1.21939 0.95772 0.90253 0.98698 0.93243 0.96065 0.90989 0.95321 0.92773 0.92765 0.95694 0.90269 0.89625 0.91474 0.91783 0.91936 0.90717 0.89639 0.91307 0.88697 0.95800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 9.42 37.16 0.35 -2.22 16 2 C -0.12 -2.57 4.40 -26.73 -0.12 -2.68 16 3 C 0.19 4.46 1.31 -68.86 -0.09 4.37 16 4 H -0.01 -0.22 6.90 -51.93 -0.36 -0.58 16 5 C -0.50 -13.56 7.06 -34.44 -0.24 -13.80 16 6 H 0.08 2.37 7.13 -52.49 -0.37 1.99 16 7 C 0.08 2.14 5.34 -17.82 -0.10 2.04 16 8 N -0.89 -26.60 13.96 55.43 0.77 -25.82 16 9 Si 0.86 21.15 25.74 -169.99 -4.38 16.77 16 10 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.25 -5.97 5.36 56.52 0.30 -5.66 16 13 N -0.52 -10.53 3.75 -228.08 -0.86 -11.38 16 14 C 0.05 0.80 4.73 -3.83 -0.02 0.78 16 15 C -0.13 -1.86 5.16 -26.65 -0.14 -2.00 16 16 C 0.11 1.61 1.25 -90.50 -0.11 1.50 16 17 C -0.17 -1.85 8.94 37.16 0.33 -1.52 16 18 F -0.21 -3.58 15.97 2.25 0.04 -3.54 16 19 C -0.13 -2.04 5.16 -26.65 -0.14 -2.18 16 20 C 0.06 1.19 5.15 -3.84 -0.02 1.17 16 21 H 0.05 0.95 7.18 -51.93 -0.37 0.58 16 22 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 23 H 0.07 1.68 7.18 -51.93 -0.37 1.31 16 24 H 0.03 0.56 6.37 -51.92 -0.33 0.23 16 25 H 0.05 1.25 4.65 -51.93 -0.24 1.01 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.02 0.46 7.87 -51.93 -0.41 0.06 16 28 H 0.08 1.36 5.62 -51.93 -0.29 1.06 16 29 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.09 2.02 6.42 -51.93 -0.33 1.69 16 37 H 0.02 0.48 7.88 -51.93 -0.41 0.08 16 LS Contribution 277.56 15.07 4.18 4.18 Total: -1.00 -28.93 277.56 -6.64 -35.57 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -6.11 Total: -1.23 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -0.29 Total: -14.55 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: -0.08 Total: -37.21 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.04 Total: -3.54 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.38 Total: 16.77 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.93 -6.64 -35.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165171.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.964 kcal (2) G-P(sol) polarization free energy of solvation -28.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds