Wall clock time and date at job start Sun Mar 29 2020 21:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47211 * 2 1 4 4 H 1.09005 * 109.47325 * 182.75576 * 3 2 1 5 5 C 1.50707 * 109.46852 * 62.76236 * 3 2 1 6 6 H 1.07995 * 119.99657 * 242.67891 * 5 3 2 7 7 C 1.37877 * 119.99668 * 62.67866 * 5 3 2 8 8 N 1.31517 * 119.99508 * 195.11365 * 7 5 3 9 9 Si 1.86800 * 120.00318 * 15.12162 * 7 5 3 10 10 H 1.48508 * 109.47104 * 95.05625 * 9 7 5 11 11 H 1.48496 * 109.46859 * 215.05111 * 9 7 5 12 12 H 1.48497 * 109.47052 * 335.05786 * 9 7 5 13 13 N 1.46895 * 109.47600 * 302.76341 * 3 2 1 14 14 C 1.46852 * 110.99553 * 305.22309 * 13 3 2 15 15 C 1.53039 * 109.51942 * 174.15645 * 14 13 3 16 16 C 1.53121 * 109.27685 * 59.18310 * 15 14 13 17 17 C 1.52998 * 109.52293 * 182.43730 * 16 15 14 18 18 F 1.39907 * 109.52395 * 62.24918 * 16 15 14 19 19 C 1.53118 * 109.16279 * 302.34461 * 16 15 14 20 20 C 1.46847 * 111.00356 * 181.01860 * 13 3 2 21 21 H 1.08998 * 109.46989 * 63.90275 * 1 2 3 22 22 H 1.08995 * 109.47010 * 183.89961 * 1 2 3 23 23 H 1.09000 * 109.46665 * 303.90073 * 1 2 3 24 24 H 1.09010 * 109.47216 * 240.00493 * 2 1 3 25 25 H 1.08997 * 109.47364 * 120.00885 * 2 1 3 26 26 H 0.97000 * 119.99509 * 180.02562 * 8 7 5 27 27 H 1.08995 * 109.46618 * 294.17484 * 14 13 3 28 28 H 1.09001 * 109.45977 * 54.14948 * 14 13 3 29 29 H 1.08994 * 109.50796 * 299.23912 * 15 14 13 30 30 H 1.09006 * 109.53308 * 179.13830 * 15 14 13 31 31 H 1.09003 * 109.47392 * 179.68620 * 17 16 15 32 32 H 1.09006 * 109.47233 * 299.67961 * 17 16 15 33 33 H 1.08996 * 109.47299 * 59.67907 * 17 16 15 34 34 H 1.09004 * 109.50022 * 297.71239 * 19 16 15 35 35 H 1.08996 * 109.53797 * 177.61856 * 19 16 15 36 36 H 1.08999 * 109.45984 * 305.85368 * 20 13 3 37 37 H 1.09002 * 109.46250 * 65.81769 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1289 1.4429 -0.0494 5 6 1.5943 2.1328 1.2633 6 1 0.9347 2.9862 1.2084 7 6 2.0287 1.6748 2.4891 8 7 1.4252 2.0682 3.5895 9 14 3.4744 0.4959 2.5870 10 1 4.7228 1.2627 2.8297 11 1 3.2574 -0.4619 3.7009 12 1 3.5922 -0.2500 1.3084 13 7 1.4967 2.1541 -1.1646 14 6 1.8070 1.4397 -2.4095 15 6 1.1049 2.1277 -3.5825 16 6 1.5795 3.5806 -3.6739 17 6 0.8361 4.2910 -4.8068 18 9 2.9553 3.6080 -3.9265 19 6 1.2886 4.2888 -2.3479 20 6 1.9852 3.5381 -1.2107 21 1 -0.3633 0.4521 -0.9229 22 1 -0.3633 -1.0252 0.0699 23 1 -0.3633 0.5732 0.8530 24 1 1.8934 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 1.7310 1.7463 4.4519 27 1 2.8842 1.4492 -2.5749 28 1 1.4604 0.4091 -2.3329 29 1 0.0267 2.1063 -3.4245 30 1 1.3474 1.6067 -4.5088 31 1 1.1705 5.3267 -4.8676 32 1 1.0439 3.7863 -5.7504 33 1 -0.2356 4.2662 -4.6099 34 1 0.2131 4.3015 -2.1704 35 1 1.6622 5.3118 -2.3913 36 1 1.7683 4.0316 -0.2634 37 1 3.0618 3.5377 -1.3817 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165171.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:13 Heat of formation + Delta-G solvation = -72.640282 kcal Electronic energy + Delta-G solvation = -17387.435379 eV Core-core repulsion = 14691.944470 eV Total energy + Delta-G solvation = -2695.490909 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.61579 -39.88746 -36.54208 -34.22083 -33.02223 -31.84198 -29.55050 -27.81688 -25.16775 -23.93571 -23.21366 -21.27302 -20.37913 -18.51045 -17.52478 -16.65051 -16.38408 -16.17865 -15.73939 -15.62578 -15.09948 -14.96254 -14.57466 -14.01924 -13.70915 -13.36926 -13.13673 -13.01454 -12.86761 -12.81679 -12.74173 -12.37514 -12.34066 -12.13947 -11.99888 -11.75210 -11.29459 -11.17330 -11.01392 -10.75158 -10.54073 -8.96641 -8.27129 -6.22282 1.29345 1.35312 1.43003 2.34742 3.04499 3.20381 3.57635 3.68673 3.80352 3.87189 4.23153 4.34886 4.44486 4.47917 4.53321 4.62714 4.69336 4.72582 4.75045 4.86168 4.96011 5.05007 5.06019 5.15205 5.18633 5.22304 5.26272 5.36777 5.40680 5.47209 5.73196 5.83603 6.08039 6.40484 6.73532 6.81094 7.39560 8.89208 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.037795 B = 0.008316 C = 0.007995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.666922 B = 3366.127316 C = 3501.197220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.118 4.118 3 C 0.192 3.808 4 H -0.025 1.025 5 C -0.493 4.493 6 H 0.042 0.958 7 C 0.023 3.977 8 N -0.939 5.939 9 Si 0.914 3.086 10 H -0.285 1.285 11 H -0.284 1.284 12 H -0.233 1.233 13 N -0.522 5.522 14 C 0.043 3.957 15 C -0.125 4.125 16 C 0.107 3.893 17 C -0.161 4.161 18 F -0.230 7.230 19 C -0.127 4.127 20 C 0.062 3.938 21 H 0.062 0.938 22 H 0.048 0.952 23 H 0.033 0.967 24 H 0.057 0.943 25 H 0.041 0.959 26 H 0.263 0.737 27 H 0.012 0.988 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.111 -0.221 -16.280 16.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.156 4.156 3 C 0.084 3.916 4 H -0.007 1.007 5 C -0.531 4.531 6 H 0.060 0.940 7 C -0.175 4.175 8 N -0.579 5.579 9 Si 0.739 3.261 10 H -0.212 1.212 11 H -0.209 1.209 12 H -0.156 1.156 13 N -0.246 5.246 14 C -0.085 4.085 15 C -0.163 4.163 16 C 0.089 3.911 17 C -0.219 4.219 18 F -0.211 7.211 19 C -0.165 4.165 20 C -0.066 4.066 21 H 0.081 0.919 22 H 0.067 0.933 23 H 0.052 0.948 24 H 0.076 0.924 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.030 0.970 28 H 0.106 0.894 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -1.592 -0.227 -16.056 16.137 hybrid contribution 1.875 -0.272 0.944 2.117 sum 0.283 -0.500 -15.112 15.123 Atomic orbital electron populations 1.21367 0.94621 0.99476 1.01781 1.21919 0.98007 0.96266 0.99445 1.19486 0.90962 0.92120 0.89054 1.00730 1.20967 1.28217 1.14307 0.89638 0.93995 1.25559 0.98626 0.97929 0.95375 1.70090 1.41187 1.47953 0.98670 0.86391 0.80473 0.79940 0.79251 1.21217 1.20950 1.15585 1.61875 1.59310 1.01598 1.01849 1.22229 0.97056 0.99234 0.89978 1.22157 1.02486 0.93510 0.98144 1.21241 0.75593 0.97726 0.96549 1.22288 1.01705 1.00947 0.96911 1.92784 1.35014 1.97767 1.95512 1.22159 1.02893 0.98899 0.92511 1.21880 0.95385 0.90316 0.99039 0.91906 0.93342 0.94815 0.92405 0.94055 0.92762 0.96963 0.89403 0.88303 0.88945 0.91225 0.90565 0.89023 0.88771 0.90067 0.91972 0.97377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.53 9.42 71.98 0.68 -3.85 16 2 C -0.12 -4.96 4.40 30.59 0.13 -4.82 16 3 C 0.19 8.98 1.31 44.17 0.06 9.03 16 4 H -0.02 -1.23 6.90 -2.38 -0.02 -1.24 16 5 C -0.49 -27.53 7.06 25.60 0.18 -27.35 16 6 H 0.04 2.61 7.13 -2.91 -0.02 2.59 16 7 C 0.02 1.32 5.34 84.65 0.45 1.78 16 8 N -0.94 -58.03 13.96 21.45 0.30 -57.73 16 9 Si 0.91 44.09 25.74 68.60 1.77 45.85 16 10 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 11 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 12 H -0.23 -10.32 5.36 99.48 0.53 -9.79 16 13 N -0.52 -20.92 3.75 -875.50 -3.28 -24.20 16 14 C 0.04 1.41 4.73 86.33 0.41 1.82 16 15 C -0.13 -3.13 5.16 30.65 0.16 -2.97 16 16 C 0.11 2.75 1.25 -10.71 -0.01 2.74 16 17 C -0.16 -2.89 8.94 71.98 0.64 -2.24 16 18 F -0.23 -7.20 15.97 44.97 0.72 -6.48 16 19 C -0.13 -3.71 5.16 30.64 0.16 -3.55 16 20 C 0.06 2.44 5.15 86.32 0.44 2.89 16 21 H 0.06 2.27 7.18 -2.39 -0.02 2.25 16 22 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.03 1.56 7.18 -2.39 -0.02 1.55 16 24 H 0.06 2.09 6.37 -2.38 -0.02 2.08 16 25 H 0.04 1.83 4.65 -2.39 -0.01 1.81 16 26 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 27 H 0.01 0.43 7.87 -2.39 -0.02 0.41 16 28 H 0.09 2.71 5.62 -2.39 -0.01 2.69 16 29 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 31 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.09 2.60 8.14 -2.38 -0.02 2.58 16 35 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.06 2.80 6.42 -2.39 -0.02 2.79 16 37 H 0.01 0.33 7.88 -2.39 -0.02 0.32 16 Total: -1.00 -64.43 277.56 3.66 -60.77 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 0.86 Total: 8.33 kcal Atomic # 6 Polarization: -29.84 SS G_CDS: 3.30 Total: -26.54 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -2.99 Total: -81.93 kcal Atomic # 9 Polarization: -7.20 SS G_CDS: 0.72 Total: -6.48 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.77 Total: 45.85 kcal Total: -64.43 3.66 -60.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165171.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.872 kcal (2) G-P(sol) polarization free energy of solvation -64.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds