Wall clock time and date at job start Sun Mar 29 2020 21:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47436 * 2 1 4 4 H 1.08997 * 109.46858 * 178.31116 * 3 2 1 5 5 C 1.50703 * 109.46774 * 298.31261 * 3 2 1 6 6 H 1.07996 * 119.99882 * 120.00024 * 5 3 2 7 7 C 1.37885 * 119.99705 * 299.99852 * 5 3 2 8 8 N 1.31515 * 119.99633 * 180.02562 * 7 5 3 9 9 Si 1.86793 * 120.00216 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.47165 * 90.00071 * 9 7 5 11 11 H 1.48507 * 109.47157 * 330.00366 * 9 7 5 12 12 H 1.48498 * 109.47379 * 210.00060 * 9 7 5 13 13 N 1.46901 * 109.46882 * 58.30823 * 3 2 1 14 14 C 1.46851 * 110.99661 * 178.05248 * 13 3 2 15 15 C 1.53028 * 109.52371 * 174.16201 * 14 13 3 16 16 C 1.53117 * 109.27824 * 59.18037 * 15 14 13 17 17 H 1.08999 * 109.52491 * 62.31283 * 16 15 14 18 18 C 1.53010 * 109.52396 * 182.44218 * 16 15 14 19 19 C 1.53124 * 109.16276 * 302.34367 * 16 15 14 20 20 H 1.09000 * 109.50273 * 297.72021 * 19 16 15 21 21 F 1.39894 * 109.50658 * 177.59702 * 19 16 15 22 22 C 1.46842 * 111.00047 * 53.84417 * 13 3 2 23 23 H 1.08996 * 109.46995 * 185.12602 * 1 2 3 24 24 H 1.09007 * 109.46786 * 305.11901 * 1 2 3 25 25 H 1.08997 * 109.47268 * 65.11777 * 1 2 3 26 26 H 1.08999 * 109.47126 * 239.99778 * 2 1 3 27 27 H 1.09000 * 109.47259 * 119.99948 * 2 1 3 28 28 H 0.96994 * 119.99918 * 179.97438 * 8 7 5 29 29 H 1.09003 * 109.46237 * 294.18028 * 14 13 3 30 30 H 1.09003 * 109.45926 * 54.14636 * 14 13 3 31 31 H 1.09003 * 109.50877 * 179.12081 * 15 14 13 32 32 H 1.09001 * 109.50450 * 299.24130 * 15 14 13 33 33 H 1.08995 * 109.46831 * 59.99726 * 18 16 15 34 34 H 1.08994 * 109.46866 * 180.02562 * 18 16 15 35 35 H 1.09001 * 109.46575 * 300.00013 * 18 16 15 36 36 H 1.08997 * 109.46438 * 305.85430 * 22 13 3 37 37 H 1.09009 * 109.46311 * 65.82032 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1297 1.4425 0.0303 5 6 1.5722 2.1407 -1.2509 6 1 0.9490 3.0196 -1.1777 7 6 1.9399 1.6573 -2.4888 8 7 1.5320 2.2669 -3.5804 9 14 3.0173 0.1366 -2.6153 10 1 2.1597 -1.0743 -2.6729 11 1 3.9049 0.0585 -1.4272 12 1 3.8440 0.2167 -3.8463 13 7 1.5173 2.1467 1.1785 14 6 2.0243 3.5236 1.2365 15 6 1.3487 4.2693 2.3894 16 6 1.6433 3.5413 3.7039 17 1 2.7171 3.5473 3.8909 18 6 0.9202 4.2474 4.8527 19 6 1.1488 2.0958 3.5997 20 1 0.0689 2.0904 3.4520 21 9 1.4635 1.4085 4.7768 22 6 1.8303 1.4132 2.4115 23 1 -0.3633 -1.0235 0.0918 24 1 -0.3633 0.5912 0.8407 25 1 -0.3633 0.4324 -0.9322 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.7909 1.9271 -4.4512 29 1 3.1024 3.5073 1.3968 30 1 1.8046 4.0314 0.2973 31 1 1.7366 5.2866 2.4420 32 1 0.2718 4.2980 2.2228 33 1 -0.1536 4.2389 4.6659 34 1 1.1308 3.7288 5.7879 35 1 1.2687 5.2778 4.9225 36 1 1.4697 0.3882 2.3258 37 1 2.9093 1.4067 2.5664 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165826.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:46 Heat of formation + Delta-G solvation = -56.113652 kcal Electronic energy + Delta-G solvation = -17300.083507 eV Core-core repulsion = 14605.309247 eV Total energy + Delta-G solvation = -2694.774261 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -47.40552 -38.65249 -35.46115 -32.50192 -31.47221 -29.92511 -28.00904 -26.04056 -23.45109 -22.49738 -21.73238 -19.97829 -19.21099 -16.50180 -16.08478 -15.67511 -15.17309 -14.49327 -14.44611 -14.29081 -13.33974 -13.20077 -13.07629 -12.76851 -12.54010 -12.40940 -11.99842 -11.64251 -11.52538 -11.18451 -10.87201 -10.78817 -10.61348 -10.50255 -10.18734 -10.07503 -10.04330 -9.69855 -9.35750 -8.97300 -8.56221 -7.43741 -6.09845 -4.07433 3.24405 3.34428 3.35925 4.37014 4.44371 4.72559 4.88417 4.96480 5.13193 5.23492 5.40849 5.56565 5.72751 5.80133 5.82911 5.88263 5.95569 6.07325 6.09252 6.12573 6.18458 6.26076 6.30518 6.42358 6.61390 6.63707 6.69589 6.89514 7.00381 7.08426 7.38728 7.57951 7.86033 8.00845 8.60741 8.96788 9.52392 11.02772 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.038007 B = 0.008410 C = 0.007581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.529958 B = 3328.451629 C = 3692.358979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.125 4.125 3 C 0.187 3.813 4 H -0.002 1.002 5 C -0.498 4.498 6 H 0.083 0.917 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.880 3.120 10 H -0.277 1.277 11 H -0.270 1.270 12 H -0.297 1.297 13 N -0.515 5.515 14 C 0.058 3.942 15 C -0.109 4.109 16 C -0.117 4.117 17 H 0.073 0.927 18 C -0.146 4.146 19 C 0.098 3.902 20 H 0.089 0.911 21 F -0.220 7.220 22 C 0.024 3.976 23 H 0.023 0.977 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.035 0.965 28 H 0.264 0.736 29 H 0.021 0.979 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.086 0.914 37 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.151 0.796 12.685 12.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.163 4.163 3 C 0.080 3.920 4 H 0.015 0.985 5 C -0.536 4.536 6 H 0.101 0.899 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.711 3.289 10 H -0.204 1.204 11 H -0.195 1.195 12 H -0.225 1.225 13 N -0.240 5.240 14 C -0.070 4.070 15 C -0.147 4.147 16 C -0.136 4.136 17 H 0.091 0.909 18 C -0.203 4.203 19 C 0.061 3.939 20 H 0.107 0.893 21 F -0.201 7.201 22 C -0.105 4.105 23 H 0.042 0.958 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.039 0.961 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -0.644 0.805 12.457 12.500 hybrid contribution 1.572 -1.050 -0.097 1.892 sum 0.927 -0.245 12.361 12.398 Atomic orbital electron populations 1.21487 0.95180 0.98268 1.03415 1.21954 0.97726 0.98092 0.98515 1.19721 0.92593 0.90600 0.89041 0.98451 1.20852 1.31937 1.13297 0.87514 0.89862 1.24875 0.95625 0.96703 0.95762 1.69868 1.45582 1.40478 0.97688 0.86964 0.80942 0.84068 0.76916 1.20406 1.19520 1.22460 1.61798 1.59803 1.01545 1.00805 1.22062 0.95542 0.90051 0.99296 1.21642 1.02079 0.98137 0.92805 1.21769 1.00760 0.94328 0.96739 0.90860 1.21802 1.00487 1.00168 0.97841 1.21634 1.01066 0.90544 0.80628 0.89287 1.92750 1.94967 1.81756 1.50584 1.22656 0.97860 0.99237 0.90752 0.95825 0.92353 0.91450 0.93439 0.94670 0.92621 0.96056 0.88576 0.91489 0.90889 0.92462 0.92580 0.92471 0.89619 0.95100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 9.34 37.16 0.35 -2.21 16 2 C -0.13 -2.70 4.64 -26.73 -0.12 -2.82 16 3 C 0.19 4.30 1.35 -68.86 -0.09 4.21 16 4 H 0.00 -0.05 7.20 -51.93 -0.37 -0.42 16 5 C -0.50 -13.26 7.35 -34.44 -0.25 -13.51 16 6 H 0.08 2.41 7.09 -52.49 -0.37 2.04 16 7 C 0.07 2.01 5.45 -17.82 -0.10 1.91 16 8 N -0.90 -26.64 13.96 55.43 0.77 -25.87 16 9 Si 0.88 21.63 24.39 -169.99 -4.15 17.48 16 10 H -0.28 -6.67 6.85 56.52 0.39 -6.28 16 11 H -0.27 -6.44 6.53 56.52 0.37 -6.07 16 12 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 13 N -0.51 -10.12 3.63 -228.08 -0.83 -10.95 16 14 C 0.06 1.06 5.27 -3.84 -0.02 1.04 16 15 C -0.11 -1.56 5.38 -26.66 -0.14 -1.70 16 16 C -0.12 -1.59 2.57 -90.49 -0.23 -1.82 16 17 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 18 C -0.15 -1.65 9.10 37.16 0.34 -1.31 16 19 C 0.10 1.47 3.42 -26.65 -0.09 1.38 16 20 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 21 F -0.22 -3.44 16.68 2.25 0.04 -3.40 16 22 C 0.02 0.42 4.59 -3.84 -0.02 0.40 16 23 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 1.13 7.11 -51.93 -0.37 0.76 16 25 H 0.07 1.53 7.45 -51.93 -0.39 1.14 16 26 H 0.05 1.09 3.24 -51.93 -0.17 0.92 16 27 H 0.03 0.68 6.30 -51.93 -0.33 0.35 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.10 1.96 6.43 -51.93 -0.33 1.62 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.63 7.88 -51.93 -0.41 0.22 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 1.49 5.70 -51.93 -0.30 1.19 16 37 H 0.03 0.54 8.14 -51.92 -0.42 0.12 16 LS Contribution 277.61 15.07 4.18 4.18 Total: -1.00 -28.02 277.61 -6.39 -34.41 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -6.02 Total: -1.43 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -0.39 Total: -14.44 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: -0.05 Total: -36.81 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.04 Total: -3.40 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.15 Total: 17.48 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.02 -6.39 -34.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165826.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.701 kcal (2) G-P(sol) polarization free energy of solvation -28.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds