Wall clock time and date at job start Sun Mar 29 2020 21:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47436 * 2 1 4 4 H 1.08997 * 109.46858 * 178.31116 * 3 2 1 5 5 C 1.50703 * 109.46774 * 298.31261 * 3 2 1 6 6 H 1.07996 * 119.99882 * 120.00024 * 5 3 2 7 7 C 1.37885 * 119.99705 * 299.99852 * 5 3 2 8 8 N 1.31515 * 119.99633 * 180.02562 * 7 5 3 9 9 Si 1.86793 * 120.00216 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.47165 * 90.00071 * 9 7 5 11 11 H 1.48507 * 109.47157 * 330.00366 * 9 7 5 12 12 H 1.48498 * 109.47379 * 210.00060 * 9 7 5 13 13 N 1.46901 * 109.46882 * 58.30823 * 3 2 1 14 14 C 1.46851 * 110.99661 * 178.05248 * 13 3 2 15 15 C 1.53028 * 109.52371 * 174.16201 * 14 13 3 16 16 C 1.53117 * 109.27824 * 59.18037 * 15 14 13 17 17 H 1.08999 * 109.52491 * 62.31283 * 16 15 14 18 18 C 1.53010 * 109.52396 * 182.44218 * 16 15 14 19 19 C 1.53124 * 109.16276 * 302.34367 * 16 15 14 20 20 H 1.09000 * 109.50273 * 297.72021 * 19 16 15 21 21 F 1.39894 * 109.50658 * 177.59702 * 19 16 15 22 22 C 1.46842 * 111.00047 * 53.84417 * 13 3 2 23 23 H 1.08996 * 109.46995 * 185.12602 * 1 2 3 24 24 H 1.09007 * 109.46786 * 305.11901 * 1 2 3 25 25 H 1.08997 * 109.47268 * 65.11777 * 1 2 3 26 26 H 1.08999 * 109.47126 * 239.99778 * 2 1 3 27 27 H 1.09000 * 109.47259 * 119.99948 * 2 1 3 28 28 H 0.96994 * 119.99918 * 179.97438 * 8 7 5 29 29 H 1.09003 * 109.46237 * 294.18028 * 14 13 3 30 30 H 1.09003 * 109.45926 * 54.14636 * 14 13 3 31 31 H 1.09003 * 109.50877 * 179.12081 * 15 14 13 32 32 H 1.09001 * 109.50450 * 299.24130 * 15 14 13 33 33 H 1.08995 * 109.46831 * 59.99726 * 18 16 15 34 34 H 1.08994 * 109.46866 * 180.02562 * 18 16 15 35 35 H 1.09001 * 109.46575 * 300.00013 * 18 16 15 36 36 H 1.08997 * 109.46438 * 305.85430 * 22 13 3 37 37 H 1.09009 * 109.46311 * 65.82032 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1297 1.4425 0.0303 5 6 1.5722 2.1407 -1.2509 6 1 0.9490 3.0196 -1.1777 7 6 1.9399 1.6573 -2.4888 8 7 1.5320 2.2669 -3.5804 9 14 3.0173 0.1366 -2.6153 10 1 2.1597 -1.0743 -2.6729 11 1 3.9049 0.0585 -1.4272 12 1 3.8440 0.2167 -3.8463 13 7 1.5173 2.1467 1.1785 14 6 2.0243 3.5236 1.2365 15 6 1.3487 4.2693 2.3894 16 6 1.6433 3.5413 3.7039 17 1 2.7171 3.5473 3.8909 18 6 0.9202 4.2474 4.8527 19 6 1.1488 2.0958 3.5997 20 1 0.0689 2.0904 3.4520 21 9 1.4635 1.4085 4.7768 22 6 1.8303 1.4132 2.4115 23 1 -0.3633 -1.0235 0.0918 24 1 -0.3633 0.5912 0.8407 25 1 -0.3633 0.4324 -0.9322 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.7909 1.9271 -4.4512 29 1 3.1024 3.5073 1.3968 30 1 1.8046 4.0314 0.2973 31 1 1.7366 5.2866 2.4420 32 1 0.2718 4.2980 2.2228 33 1 -0.1536 4.2389 4.6659 34 1 1.1308 3.7288 5.7879 35 1 1.2687 5.2778 4.9225 36 1 1.4697 0.3882 2.3258 37 1 2.9093 1.4067 2.5664 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165826.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:46 Heat of formation + Delta-G solvation = -73.205626 kcal Electronic energy + Delta-G solvation = -17300.824671 eV Core-core repulsion = 14605.309247 eV Total energy + Delta-G solvation = -2695.515424 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.62132 -40.13930 -36.95157 -34.35681 -33.11998 -31.33016 -29.50206 -27.64783 -25.14713 -23.89744 -23.12777 -21.42753 -20.75061 -18.51261 -17.65014 -17.01772 -16.40928 -16.05095 -15.94765 -15.90883 -14.92534 -14.79613 -14.61839 -14.20682 -14.10850 -13.57584 -13.36164 -12.95981 -12.92618 -12.72046 -12.63267 -12.46416 -12.13463 -12.03552 -11.84893 -11.54820 -11.38331 -11.30791 -11.01048 -10.80649 -10.65218 -9.05589 -8.26458 -6.26728 1.28364 1.33023 1.41384 2.31221 2.97578 3.09299 3.55016 3.70054 3.76750 3.91604 4.16697 4.27497 4.36014 4.43260 4.45867 4.54824 4.65015 4.74088 4.77224 4.83966 4.87092 4.97286 5.05209 5.11247 5.18460 5.21495 5.29480 5.34083 5.35347 5.46092 5.63801 5.73735 6.02072 6.35472 6.65199 6.78436 7.36498 8.89666 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.038007 B = 0.008410 C = 0.007581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.529958 B = 3328.451629 C = 3692.358979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.127 4.127 3 C 0.190 3.810 4 H -0.016 1.016 5 C -0.487 4.487 6 H 0.047 0.953 7 C 0.018 3.982 8 N -0.945 5.945 9 Si 0.936 3.064 10 H -0.266 1.266 11 H -0.257 1.257 12 H -0.300 1.300 13 N -0.520 5.520 14 C 0.057 3.943 15 C -0.098 4.098 16 C -0.113 4.113 17 H 0.073 0.927 18 C -0.140 4.140 19 C 0.103 3.897 20 H 0.096 0.904 21 F -0.220 7.220 22 C 0.024 3.976 23 H 0.051 0.949 24 H 0.065 0.935 25 H 0.033 0.967 26 H 0.035 0.965 27 H 0.064 0.936 28 H 0.264 0.736 29 H 0.019 0.981 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.012 -0.033 15.015 15.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.165 4.165 3 C 0.082 3.918 4 H 0.001 0.999 5 C -0.525 4.525 6 H 0.065 0.935 7 C -0.179 4.179 8 N -0.586 5.586 9 Si 0.764 3.236 10 H -0.192 1.192 11 H -0.182 1.182 12 H -0.228 1.228 13 N -0.244 5.244 14 C -0.071 4.071 15 C -0.136 4.136 16 C -0.132 4.132 17 H 0.091 0.909 18 C -0.197 4.197 19 C 0.066 3.934 20 H 0.114 0.886 21 F -0.201 7.201 22 C -0.105 4.105 23 H 0.070 0.930 24 H 0.084 0.916 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.037 0.963 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -0.485 -0.026 14.822 14.830 hybrid contribution 1.497 -0.718 -0.784 1.837 sum 1.012 -0.744 14.038 14.094 Atomic orbital electron populations 1.21393 0.94304 0.99935 1.01921 1.21934 0.98510 0.96771 0.99251 1.19537 0.91630 0.91715 0.88882 0.99903 1.21007 1.30238 1.11996 0.89304 0.93512 1.25596 0.97163 0.99642 0.95487 1.70006 1.47768 1.42531 0.98285 0.86051 0.79541 0.80983 0.77032 1.19193 1.18169 1.22783 1.61718 1.59740 1.02102 1.00885 1.22057 0.95866 0.89573 0.99580 1.21559 1.01614 0.98756 0.91622 1.21736 1.01081 0.93412 0.96945 0.90894 1.21760 1.00549 1.00770 0.96658 1.21586 1.01192 0.91041 0.79546 0.88561 1.92754 1.95008 1.81897 1.50420 1.22707 0.98068 0.99360 0.90361 0.92953 0.91614 0.94738 0.94652 0.91797 0.92682 0.96304 0.91826 0.89342 0.90945 0.91892 0.92290 0.90914 0.89365 0.95335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.60 9.34 71.98 0.67 -3.93 16 2 C -0.13 -5.24 4.64 30.60 0.14 -5.10 16 3 C 0.19 8.67 1.35 44.17 0.06 8.73 16 4 H -0.02 -0.79 7.20 -2.39 -0.02 -0.81 16 5 C -0.49 -26.66 7.35 25.60 0.19 -26.47 16 6 H 0.05 2.85 7.09 -2.91 -0.02 2.83 16 7 C 0.02 1.05 5.45 84.66 0.46 1.51 16 8 N -0.94 -57.96 13.96 21.45 0.30 -57.66 16 9 Si 0.94 44.72 24.39 68.60 1.67 46.39 16 10 H -0.27 -12.14 6.85 99.48 0.68 -11.46 16 11 H -0.26 -11.65 6.53 99.48 0.65 -11.00 16 12 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 13 N -0.52 -20.05 3.63 -875.51 -3.18 -23.23 16 14 C 0.06 2.07 5.27 86.32 0.45 2.52 16 15 C -0.10 -2.63 5.38 30.64 0.16 -2.46 16 16 C -0.11 -2.74 2.57 -10.71 -0.03 -2.77 16 17 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 18 C -0.14 -2.68 9.10 71.99 0.65 -2.03 16 19 C 0.10 2.81 3.42 30.65 0.10 2.91 16 20 H 0.10 2.53 8.14 -2.39 -0.02 2.52 16 21 F -0.22 -6.20 16.68 44.97 0.75 -5.45 16 22 C 0.02 0.77 4.59 86.33 0.40 1.17 16 23 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.06 2.42 7.11 -2.38 -0.02 2.41 16 25 H 0.03 1.54 7.45 -2.39 -0.02 1.52 16 26 H 0.04 1.55 3.24 -2.39 -0.01 1.54 16 27 H 0.06 2.28 6.30 -2.39 -0.02 2.26 16 28 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 29 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 2.70 6.43 -2.39 -0.02 2.68 16 31 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.06 1.12 7.88 -2.39 -0.02 1.10 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.09 2.80 5.70 -2.39 -0.01 2.79 16 37 H 0.03 0.94 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -61.05 277.61 3.77 -57.28 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: 0.95 Total: 8.57 kcal Atomic # 6 Polarization: -29.18 SS G_CDS: 3.27 Total: -25.91 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -2.88 Total: -80.89 kcal Atomic # 9 Polarization: -6.20 SS G_CDS: 0.75 Total: -5.45 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.67 Total: 46.39 kcal Total: -61.05 3.77 -57.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165826.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.924 kcal (2) G-P(sol) polarization free energy of solvation -61.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds