Wall clock time and date at job start Sun Mar 29 2020 21:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47170 * 2 1 4 4 H 1.08997 * 109.47494 * 56.99328 * 3 2 1 5 5 C 1.50699 * 109.46923 * 296.99236 * 3 2 1 6 6 H 1.08002 * 120.00124 * 275.09489 * 5 3 2 7 7 C 1.37874 * 119.99901 * 95.08958 * 5 3 2 8 8 N 1.31521 * 120.00269 * 7.23183 * 7 5 3 9 9 Si 1.86805 * 120.00219 * 187.23176 * 7 5 3 10 10 H 1.48489 * 109.47395 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.46672 * 300.00332 * 9 7 5 12 12 H 1.48504 * 109.46869 * 59.99813 * 9 7 5 13 13 N 1.46904 * 109.46952 * 176.99436 * 3 2 1 14 14 C 1.46842 * 110.99915 * 57.79882 * 13 3 2 15 15 C 1.53033 * 109.52325 * 174.15924 * 14 13 3 16 16 C 1.53119 * 109.28075 * 59.17994 * 15 14 13 17 17 C 1.53121 * 109.15812 * 302.34647 * 16 15 14 18 18 C 1.52998 * 109.50522 * 177.59304 * 17 16 15 19 19 F 1.39904 * 109.50267 * 297.67356 * 17 16 15 20 20 C 1.46847 * 111.00130 * 293.58913 * 13 3 2 21 21 H 1.08999 * 109.47221 * 66.23611 * 1 2 3 22 22 H 1.08998 * 109.47479 * 186.23771 * 1 2 3 23 23 H 1.09006 * 109.46994 * 306.24128 * 1 2 3 24 24 H 1.08993 * 109.47379 * 239.99483 * 2 1 3 25 25 H 1.09005 * 109.47075 * 119.99760 * 2 1 3 26 26 H 0.96998 * 119.99004 * 2.57471 * 8 7 5 27 27 H 1.09000 * 109.46438 * 294.17620 * 14 13 3 28 28 H 1.09006 * 109.46708 * 54.13920 * 14 13 3 29 29 H 1.09003 * 109.50554 * 179.11843 * 15 14 13 30 30 H 1.09001 * 109.50468 * 299.19652 * 15 14 13 31 31 H 1.08999 * 109.52444 * 62.24690 * 16 15 14 32 32 H 1.08995 * 109.52420 * 182.44425 * 16 15 14 33 33 H 1.09003 * 109.46769 * 59.99903 * 18 17 16 34 34 H 1.09000 * 109.47226 * 180.02562 * 18 17 16 35 35 H 1.09000 * 109.47115 * 300.00408 * 18 17 16 36 36 H 1.09006 * 109.46047 * 305.85458 * 20 13 3 37 37 H 1.08994 * 109.46174 * 65.82058 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6334 1.9717 0.8618 5 6 1.5994 2.1311 -1.2660 6 1 2.1863 2.0314 -2.1672 7 6 0.4472 2.8881 -1.2739 8 7 -0.1903 3.1272 -0.1487 9 14 -0.2088 3.5742 -2.8829 10 1 -1.4501 4.3462 -2.6223 11 1 0.8104 4.4655 -3.4928 12 1 -0.5080 2.4555 -3.8125 13 7 3.5072 1.4431 0.0726 14 6 4.0898 0.6926 -1.0470 15 6 5.6132 0.8362 -1.0213 16 6 6.1490 0.3014 0.3096 17 6 5.4903 1.0670 1.4605 18 6 5.9750 0.4986 2.7957 19 9 5.8329 2.4209 1.3773 20 6 3.9705 0.9168 1.3629 21 1 -0.3633 0.4141 -0.9405 22 1 -0.3634 -1.0215 0.1117 23 1 -0.3633 0.6076 0.8289 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 0.1703 2.8027 0.6913 27 1 3.8227 -0.3603 -0.9566 28 1 3.7038 1.0855 -1.9877 29 1 6.0464 0.2662 -1.8433 30 1 5.8815 1.8874 -1.1263 31 1 5.9147 -0.7595 0.3968 32 1 7.2292 0.4414 0.3501 33 1 7.0580 0.6027 2.8632 34 1 5.5055 1.0437 3.6146 35 1 5.7067 -0.5558 2.8606 36 1 3.4978 1.4726 2.1727 37 1 3.7039 -0.1371 1.4420 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166284.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:15 Heat of formation + Delta-G solvation = -80.882087 kcal Electronic energy + Delta-G solvation = -17417.685427 eV Core-core repulsion = 14721.837126 eV Total energy + Delta-G solvation = -2695.848301 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.49799 -40.03515 -36.70879 -33.99957 -32.99797 -32.26224 -28.44936 -27.39879 -25.60692 -24.21910 -23.16294 -21.84053 -20.34089 -18.39426 -17.22699 -16.75027 -16.41954 -15.88498 -15.70049 -15.48321 -15.24638 -14.99939 -14.30983 -14.08601 -13.66145 -13.52628 -13.35947 -13.00568 -12.99241 -12.67180 -12.49410 -12.39767 -12.21924 -12.03091 -11.95717 -11.68603 -11.67939 -11.22078 -11.00577 -10.62147 -10.26367 -8.82966 -8.49894 -6.17554 1.54488 1.61210 1.79793 2.59524 3.07494 3.39925 3.51628 3.68453 3.75251 3.92347 4.15409 4.25731 4.33511 4.36824 4.51461 4.58288 4.61788 4.64705 4.71696 4.76980 4.83896 4.95374 4.97866 5.04248 5.12447 5.15713 5.24391 5.26597 5.42660 5.50113 5.54810 5.94807 6.22471 6.56096 6.59394 6.82008 7.57508 8.87195 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.033405 B = 0.008411 C = 0.007949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.986316 B = 3328.052255 C = 3521.553857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.132 4.132 3 C 0.198 3.802 4 H 0.013 0.987 5 C -0.581 4.581 6 H 0.045 0.955 7 C -0.019 4.019 8 N -0.933 5.933 9 Si 1.104 2.896 10 H -0.287 1.287 11 H -0.279 1.279 12 H -0.270 1.270 13 N -0.544 5.544 14 C 0.062 3.938 15 C -0.115 4.115 16 C -0.130 4.130 17 C 0.113 3.887 18 C -0.163 4.163 19 F -0.224 7.224 20 C 0.033 3.967 21 H 0.039 0.961 22 H 0.054 0.946 23 H 0.028 0.972 24 H 0.050 0.950 25 H 0.042 0.958 26 H 0.257 0.743 27 H 0.031 0.969 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.050 0.950 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.055 0.945 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.029 -8.987 1.955 14.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.172 4.172 3 C 0.091 3.909 4 H 0.031 0.969 5 C -0.620 4.620 6 H 0.063 0.937 7 C -0.219 4.219 8 N -0.571 5.571 9 Si 0.928 3.072 10 H -0.213 1.213 11 H -0.205 1.205 12 H -0.196 1.196 13 N -0.268 5.268 14 C -0.066 4.066 15 C -0.153 4.153 16 C -0.168 4.168 17 C 0.095 3.905 18 C -0.221 4.221 19 F -0.205 7.205 20 C -0.096 4.096 21 H 0.059 0.941 22 H 0.073 0.927 23 H 0.047 0.953 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.049 0.951 28 H 0.076 0.924 29 H 0.109 0.891 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.073 0.927 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.970 -7.584 1.264 12.590 hybrid contribution 0.597 -1.163 0.894 1.584 sum 10.567 -8.747 2.158 13.886 Atomic orbital electron populations 1.21398 0.96028 0.99273 1.00865 1.22105 0.96589 0.99579 0.98912 1.19445 0.83134 0.91873 0.96483 0.96942 1.22029 1.10539 1.33227 0.96169 0.93694 1.26892 0.94942 0.94614 1.05412 1.70938 1.41525 1.45998 0.98681 0.83091 0.75803 0.76480 0.71853 1.21251 1.20524 1.19581 1.62222 1.09535 1.53727 1.01278 1.21994 0.94821 0.94995 0.94789 1.21592 0.94133 1.01406 0.98176 1.22146 1.01125 1.00477 0.93024 1.21243 0.93924 0.76832 0.98536 1.22305 1.02991 1.02772 0.94044 1.92795 1.93422 1.36673 1.97620 1.22661 0.94888 0.98800 0.93223 0.94146 0.92656 0.95271 0.93153 0.93944 0.93181 0.95124 0.92381 0.89098 0.93095 0.88715 0.89074 0.89812 0.91882 0.88897 0.92674 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.19 8.89 71.98 0.64 -4.55 16 2 C -0.13 -5.72 4.69 30.60 0.14 -5.58 16 3 C 0.20 9.87 1.95 44.17 0.09 9.95 16 4 H 0.01 0.72 5.94 -2.39 -0.01 0.70 16 5 C -0.58 -32.06 7.48 25.60 0.19 -31.86 16 6 H 0.04 2.50 6.09 -2.91 -0.02 2.48 16 7 C -0.02 -1.09 4.34 84.65 0.37 -0.72 16 8 N -0.93 -56.01 13.09 21.45 0.28 -55.73 16 9 Si 1.10 50.71 29.91 68.60 2.05 52.76 16 10 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 13 N -0.54 -23.94 4.56 -875.51 -3.99 -27.94 16 14 C 0.06 2.35 4.65 86.33 0.40 2.75 16 15 C -0.12 -3.49 5.96 30.65 0.18 -3.31 16 16 C -0.13 -3.25 5.07 30.67 0.16 -3.10 16 17 C 0.11 3.39 1.27 -10.74 -0.01 3.37 16 18 C -0.16 -3.50 8.94 71.98 0.64 -2.86 16 19 F -0.22 -8.44 16.35 44.97 0.74 -7.71 16 20 C 0.03 1.20 4.10 86.33 0.35 1.55 16 21 H 0.04 1.96 6.89 -2.39 -0.02 1.94 16 22 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 23 H 0.03 1.35 7.55 -2.38 -0.02 1.34 16 24 H 0.05 2.13 6.67 -2.39 -0.02 2.11 16 25 H 0.04 1.65 6.56 -2.38 -0.02 1.63 16 26 H 0.26 15.69 5.89 -92.71 -0.55 15.14 16 27 H 0.03 1.09 6.67 -2.39 -0.02 1.08 16 28 H 0.06 2.50 6.07 -2.38 -0.01 2.48 16 29 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.05 1.76 7.91 -2.39 -0.02 1.75 16 31 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.05 2.16 8.06 -2.38 -0.02 2.14 16 37 H 0.05 1.75 6.70 -2.39 -0.02 1.74 16 Total: -1.00 -64.42 280.55 3.48 -60.93 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 1.26 Total: 12.01 kcal Atomic # 6 Polarization: -37.49 SS G_CDS: 3.15 Total: -34.34 kcal Atomic # 7 Polarization: -79.95 SS G_CDS: -3.71 Total: -83.67 kcal Atomic # 9 Polarization: -8.44 SS G_CDS: 0.74 Total: -7.71 kcal Atomic # 14 Polarization: 50.71 SS G_CDS: 2.05 Total: 52.76 kcal Total: -64.42 3.48 -60.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166284.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.948 kcal (2) G-P(sol) polarization free energy of solvation -64.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds