Wall clock time and date at job start Sun Mar 29 2020 21:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46870 * 2 1 4 4 H 1.08993 * 109.47298 * 56.92541 * 3 2 1 5 5 C 1.50699 * 109.46658 * 176.92690 * 3 2 1 6 6 H 1.07995 * 120.00397 * 95.23037 * 5 3 2 7 7 C 1.37887 * 119.99649 * 275.22184 * 5 3 2 8 8 N 1.31515 * 120.00144 * 355.20974 * 7 5 3 9 9 Si 1.86802 * 119.99586 * 175.20408 * 7 5 3 10 10 H 1.48495 * 109.47101 * 60.00571 * 9 7 5 11 11 H 1.48507 * 109.47327 * 300.00074 * 9 7 5 12 12 H 1.48507 * 109.46755 * 180.02562 * 9 7 5 13 13 N 1.46891 * 109.46986 * 296.92304 * 3 2 1 14 14 C 1.46848 * 111.00460 * 299.21137 * 13 3 2 15 15 C 1.53038 * 109.52710 * 174.16209 * 14 13 3 16 16 C 1.53124 * 109.27597 * 59.17937 * 15 14 13 17 17 C 1.53114 * 109.16078 * 302.34491 * 16 15 14 18 18 C 1.53004 * 109.50438 * 177.59825 * 17 16 15 19 19 F 1.39905 * 109.53758 * 297.69679 * 17 16 15 20 20 C 1.46853 * 110.99859 * 175.00376 * 13 3 2 21 21 H 1.09000 * 109.47023 * 60.00331 * 1 2 3 22 22 H 1.09007 * 109.46934 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47496 * 300.00285 * 1 2 3 24 24 H 1.08998 * 109.47078 * 240.00048 * 2 1 3 25 25 H 1.09000 * 109.47023 * 119.99669 * 2 1 3 26 26 H 0.96998 * 119.99611 * 5.21566 * 8 7 5 27 27 H 1.09003 * 109.46393 * 294.17899 * 14 13 3 28 28 H 1.08997 * 109.46093 * 54.14109 * 14 13 3 29 29 H 1.08993 * 109.50536 * 299.23992 * 15 14 13 30 30 H 1.08997 * 109.50137 * 179.11653 * 15 14 13 31 31 H 1.09003 * 109.51801 * 182.43931 * 16 15 14 32 32 H 1.08997 * 109.52119 * 62.25149 * 16 15 14 33 33 H 1.09000 * 109.46871 * 300.19527 * 18 17 16 34 34 H 1.08998 * 109.47271 * 60.19351 * 18 17 16 35 35 H 1.08997 * 109.47054 * 180.19864 * 18 17 16 36 36 H 1.09001 * 109.45791 * 305.85332 * 20 13 3 37 37 H 1.08994 * 109.46175 * 65.82486 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6323 1.9720 0.8611 5 6 3.5450 1.4432 0.0762 6 1 4.1315 1.5120 -0.8281 7 6 4.1733 1.3561 1.3005 8 7 3.4623 1.3674 2.4068 9 14 6.0345 1.2217 1.3876 10 1 6.6472 2.4169 0.7542 11 1 6.4767 -0.0006 0.6695 12 1 6.4590 1.1415 2.8084 13 7 1.6119 2.1132 -1.2348 14 6 2.1589 1.4368 -2.4179 15 6 1.5777 2.0706 -3.6839 16 6 1.9345 3.5594 -3.7134 17 6 1.3951 4.2306 -2.4473 18 6 1.7989 5.7064 -2.4399 19 9 0.0001 4.1280 -2.4214 20 6 1.9817 3.5343 -1.2172 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.4935 1.3607 2.3607 27 1 3.2441 1.5395 -2.4257 28 1 1.8947 0.3799 -2.3866 29 1 0.4938 1.9561 -3.6835 30 1 1.9960 1.5787 -4.5620 31 1 1.4858 4.0240 -4.5915 32 1 3.0177 3.6736 -3.7531 33 1 2.8858 5.7858 -2.4615 34 1 1.3810 6.2019 -3.3163 35 1 1.4178 6.1828 -1.5368 36 1 1.5885 4.0006 -0.3139 37 1 3.0676 3.6271 -1.2306 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166287.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:21 Heat of formation + Delta-G solvation = -69.075436 kcal Electronic energy + Delta-G solvation = -17501.399399 eV Core-core repulsion = 14806.063073 eV Total energy + Delta-G solvation = -2695.336326 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -47.06655 -38.28934 -34.92341 -32.21375 -31.36029 -30.94774 -26.50842 -26.10091 -23.79062 -22.42956 -21.80549 -19.49877 -19.07877 -16.75446 -15.68934 -15.07403 -14.96319 -14.46839 -14.09480 -13.78315 -13.61164 -12.91412 -12.75270 -12.47026 -12.16492 -11.98081 -11.89130 -11.78295 -11.48834 -11.09464 -10.88966 -10.70103 -10.60599 -10.42570 -10.20442 -9.97284 -9.94024 -9.49478 -9.43708 -8.96276 -8.39870 -7.04834 -6.36924 -4.14166 3.37727 3.39647 3.58026 4.47510 4.73423 4.82845 4.96160 5.11631 5.26201 5.39444 5.47177 5.69265 5.76797 5.93397 5.96912 6.08383 6.13035 6.18922 6.20610 6.24560 6.38019 6.41262 6.47042 6.59861 6.66947 6.83644 6.88024 6.89254 7.12791 7.34271 7.36954 7.91119 8.11885 8.29349 8.50563 8.79554 9.60257 10.97151 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.025156 B = 0.009978 C = 0.008598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.792846 B = 2805.597833 C = 3255.805998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.107 4.107 3 C 0.196 3.804 4 H 0.042 0.958 5 C -0.624 4.624 6 H 0.051 0.949 7 C 0.027 3.973 8 N -0.907 5.907 9 Si 1.061 2.939 10 H -0.290 1.290 11 H -0.288 1.288 12 H -0.282 1.282 13 N -0.525 5.525 14 C 0.056 3.944 15 C -0.118 4.118 16 C -0.135 4.135 17 C 0.119 3.881 18 C -0.170 4.170 19 F -0.206 7.206 20 C 0.052 3.948 21 H 0.057 0.943 22 H 0.029 0.971 23 H 0.041 0.959 24 H 0.046 0.954 25 H 0.052 0.948 26 H 0.271 0.729 27 H 0.037 0.963 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.421 3.789 -9.775 10.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.146 4.146 3 C 0.089 3.911 4 H 0.060 0.940 5 C -0.663 4.663 6 H 0.069 0.931 7 C -0.179 4.179 8 N -0.543 5.543 9 Si 0.890 3.110 10 H -0.216 1.216 11 H -0.215 1.215 12 H -0.208 1.208 13 N -0.248 5.248 14 C -0.072 4.072 15 C -0.156 4.156 16 C -0.173 4.173 17 C 0.101 3.899 18 C -0.228 4.228 19 F -0.187 7.187 20 C -0.077 4.077 21 H 0.076 0.924 22 H 0.048 0.952 23 H 0.060 0.940 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.056 0.944 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.700 3.689 -8.717 9.617 hybrid contribution -0.367 0.063 -1.002 1.069 sum -2.067 3.752 -9.719 10.621 Atomic orbital electron populations 1.21743 0.97917 0.98865 1.01453 1.21689 0.93244 0.99308 1.00335 1.19446 0.93803 0.90386 0.87427 0.94045 1.22471 0.92307 1.56238 0.95310 0.93107 1.25709 1.06639 0.93302 0.92201 1.70793 1.08577 1.45808 1.29119 0.83652 0.74810 0.76471 0.76066 1.21628 1.21480 1.20765 1.62336 1.58365 1.00581 1.03541 1.21988 0.97312 0.98333 0.89604 1.21615 1.01780 0.94284 0.97937 1.22108 1.01443 0.97107 0.96632 1.21027 0.76232 0.95391 0.97297 1.22319 1.02645 0.95014 1.02809 1.92805 1.30929 1.97305 1.97680 1.22312 0.99160 0.90730 0.95486 0.92436 0.95213 0.94015 0.93584 0.92905 0.91704 0.94443 0.91132 0.91354 0.92196 0.91743 0.90826 0.90933 0.91944 0.91523 0.91137 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.78 37.16 0.36 -2.45 16 2 C -0.11 -2.42 5.17 -26.73 -0.14 -2.56 16 3 C 0.20 4.75 1.49 -68.87 -0.10 4.65 16 4 H 0.04 1.12 6.61 -51.93 -0.34 0.78 16 5 C -0.62 -16.51 6.91 -34.44 -0.24 -16.74 16 6 H 0.05 1.36 6.07 -52.49 -0.32 1.04 16 7 C 0.03 0.75 5.46 -17.82 -0.10 0.65 16 8 N -0.91 -26.53 13.63 55.43 0.76 -25.78 16 9 Si 1.06 24.59 29.91 -169.99 -5.08 19.50 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.52 -11.17 3.95 -228.08 -0.90 -12.07 16 14 C 0.06 1.08 4.81 -3.83 -0.02 1.06 16 15 C -0.12 -1.89 5.97 -26.65 -0.16 -2.04 16 16 C -0.13 -2.01 5.07 -26.61 -0.13 -2.15 16 17 C 0.12 1.98 1.27 -90.54 -0.11 1.87 16 18 C -0.17 -2.29 8.94 37.16 0.33 -1.96 16 19 F -0.21 -3.86 16.35 2.25 0.04 -3.83 16 20 C 0.05 1.05 4.16 -3.83 -0.02 1.03 16 21 H 0.06 1.13 7.69 -51.93 -0.40 0.73 16 22 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.05 1.01 6.14 -51.93 -0.32 0.69 16 25 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 26 H 0.27 7.94 6.66 -40.82 -0.27 7.67 16 27 H 0.04 0.78 6.36 -51.93 -0.33 0.45 16 28 H 0.07 1.38 5.97 -51.93 -0.31 1.07 16 29 H 0.07 1.14 7.91 -51.93 -0.41 0.73 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 1.49 8.08 -51.93 -0.42 1.07 16 37 H 0.05 1.17 7.44 -51.93 -0.39 0.78 16 LS Contribution 286.39 15.07 4.32 4.32 Total: -1.00 -28.41 286.39 -7.31 -35.72 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.11 Total: 0.77 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -0.32 Total: -18.63 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: -0.15 Total: -37.85 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.04 Total: -3.83 kcal Atomic # 14 Polarization: 24.59 SS G_CDS: -5.08 Total: 19.50 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.41 -7.31 -35.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166287.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.352 kcal (2) G-P(sol) polarization free energy of solvation -28.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds