Wall clock time and date at job start Sun Mar 29 2020 21:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46870 * 2 1 4 4 H 1.08993 * 109.47298 * 56.92541 * 3 2 1 5 5 C 1.50699 * 109.46658 * 176.92690 * 3 2 1 6 6 H 1.07995 * 120.00397 * 95.23037 * 5 3 2 7 7 C 1.37887 * 119.99649 * 275.22184 * 5 3 2 8 8 N 1.31515 * 120.00144 * 355.20974 * 7 5 3 9 9 Si 1.86802 * 119.99586 * 175.20408 * 7 5 3 10 10 H 1.48495 * 109.47101 * 60.00571 * 9 7 5 11 11 H 1.48507 * 109.47327 * 300.00074 * 9 7 5 12 12 H 1.48507 * 109.46755 * 180.02562 * 9 7 5 13 13 N 1.46891 * 109.46986 * 296.92304 * 3 2 1 14 14 C 1.46848 * 111.00460 * 299.21137 * 13 3 2 15 15 C 1.53038 * 109.52710 * 174.16209 * 14 13 3 16 16 C 1.53124 * 109.27597 * 59.17937 * 15 14 13 17 17 C 1.53114 * 109.16078 * 302.34491 * 16 15 14 18 18 C 1.53004 * 109.50438 * 177.59825 * 17 16 15 19 19 F 1.39905 * 109.53758 * 297.69679 * 17 16 15 20 20 C 1.46853 * 110.99859 * 175.00376 * 13 3 2 21 21 H 1.09000 * 109.47023 * 60.00331 * 1 2 3 22 22 H 1.09007 * 109.46934 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47496 * 300.00285 * 1 2 3 24 24 H 1.08998 * 109.47078 * 240.00048 * 2 1 3 25 25 H 1.09000 * 109.47023 * 119.99669 * 2 1 3 26 26 H 0.96998 * 119.99611 * 5.21566 * 8 7 5 27 27 H 1.09003 * 109.46393 * 294.17899 * 14 13 3 28 28 H 1.08997 * 109.46093 * 54.14109 * 14 13 3 29 29 H 1.08993 * 109.50536 * 299.23992 * 15 14 13 30 30 H 1.08997 * 109.50137 * 179.11653 * 15 14 13 31 31 H 1.09003 * 109.51801 * 182.43931 * 16 15 14 32 32 H 1.08997 * 109.52119 * 62.25149 * 16 15 14 33 33 H 1.09000 * 109.46871 * 300.19527 * 18 17 16 34 34 H 1.08998 * 109.47271 * 60.19351 * 18 17 16 35 35 H 1.08997 * 109.47054 * 180.19864 * 18 17 16 36 36 H 1.09001 * 109.45791 * 305.85332 * 20 13 3 37 37 H 1.08994 * 109.46175 * 65.82486 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6323 1.9720 0.8611 5 6 3.5450 1.4432 0.0762 6 1 4.1315 1.5120 -0.8281 7 6 4.1733 1.3561 1.3005 8 7 3.4623 1.3674 2.4068 9 14 6.0345 1.2217 1.3876 10 1 6.6472 2.4169 0.7542 11 1 6.4767 -0.0006 0.6695 12 1 6.4590 1.1415 2.8084 13 7 1.6119 2.1132 -1.2348 14 6 2.1589 1.4368 -2.4179 15 6 1.5777 2.0706 -3.6839 16 6 1.9345 3.5594 -3.7134 17 6 1.3951 4.2306 -2.4473 18 6 1.7989 5.7064 -2.4399 19 9 0.0001 4.1280 -2.4214 20 6 1.9817 3.5343 -1.2172 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.4935 1.3607 2.3607 27 1 3.2441 1.5395 -2.4257 28 1 1.8947 0.3799 -2.3866 29 1 0.4938 1.9561 -3.6835 30 1 1.9960 1.5787 -4.5620 31 1 1.4858 4.0240 -4.5915 32 1 3.0177 3.6736 -3.7531 33 1 2.8858 5.7858 -2.4615 34 1 1.3810 6.2019 -3.3163 35 1 1.4178 6.1828 -1.5368 36 1 1.5885 4.0006 -0.3139 37 1 3.0676 3.6271 -1.2306 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166287.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:21 Heat of formation + Delta-G solvation = -85.397318 kcal Electronic energy + Delta-G solvation = -17502.107169 eV Core-core repulsion = 14806.063073 eV Total energy + Delta-G solvation = -2696.044096 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.47869 -39.93953 -36.57796 -34.09098 -32.84110 -32.53363 -28.23483 -27.57057 -25.65980 -24.11862 -23.25658 -21.20239 -20.64800 -18.68623 -17.24181 -16.67116 -16.35321 -15.86371 -15.81714 -15.70506 -15.13666 -14.61385 -14.35855 -13.87904 -13.64986 -13.53164 -13.32929 -13.05500 -12.97833 -12.74745 -12.60769 -12.45623 -12.25128 -12.02132 -11.81103 -11.72639 -11.58559 -11.08405 -11.00914 -10.86257 -10.49331 -8.91123 -8.51076 -6.33429 1.49291 1.55817 1.74675 2.54288 3.12317 3.24934 3.56155 3.70776 3.77352 3.96256 4.20967 4.27952 4.40234 4.49041 4.53082 4.61778 4.67124 4.76679 4.80958 4.84567 4.88198 4.97342 5.03000 5.10685 5.15227 5.17422 5.26673 5.34222 5.42321 5.47761 5.57393 5.93542 6.07519 6.48950 6.56050 6.60262 7.49043 8.77218 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.025156 B = 0.009978 C = 0.008598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.792846 B = 2805.597833 C = 3255.805998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.101 4.101 3 C 0.198 3.802 4 H 0.004 0.996 5 C -0.621 4.621 6 H 0.048 0.952 7 C -0.024 4.024 8 N -0.936 5.936 9 Si 1.106 2.894 10 H -0.273 1.273 11 H -0.273 1.273 12 H -0.287 1.287 13 N -0.527 5.527 14 C 0.056 3.944 15 C -0.112 4.112 16 C -0.132 4.132 17 C 0.118 3.882 18 C -0.165 4.165 19 F -0.219 7.219 20 C 0.052 3.948 21 H 0.059 0.941 22 H 0.055 0.945 23 H 0.032 0.968 24 H 0.052 0.948 25 H 0.026 0.974 26 H 0.258 0.742 27 H 0.021 0.979 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.046 0.954 37 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.059 4.140 -12.186 13.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.139 4.139 3 C 0.091 3.909 4 H 0.022 0.978 5 C -0.661 4.661 6 H 0.067 0.933 7 C -0.223 4.223 8 N -0.573 5.573 9 Si 0.929 3.071 10 H -0.199 1.199 11 H -0.198 1.198 12 H -0.213 1.213 13 N -0.250 5.250 14 C -0.072 4.072 15 C -0.149 4.149 16 C -0.170 4.170 17 C 0.100 3.900 18 C -0.223 4.223 19 F -0.199 7.199 20 C -0.077 4.077 21 H 0.078 0.922 22 H 0.074 0.926 23 H 0.052 0.948 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.068 0.932 27 H 0.039 0.961 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.352 4.046 -11.160 11.948 hybrid contribution -0.519 -0.045 -0.267 0.586 sum -1.872 4.001 -11.427 12.251 Atomic orbital electron populations 1.21606 0.95504 1.00502 1.01121 1.21536 0.95358 0.97758 0.99259 1.19276 0.92637 0.91224 0.87785 0.97792 1.22725 0.93597 1.54746 0.94984 0.93346 1.27025 1.10347 0.92807 0.92121 1.70909 1.07889 1.48459 1.30044 0.83072 0.70403 0.77659 0.76010 1.19856 1.19804 1.21315 1.62309 1.58371 1.01234 1.03086 1.22049 0.96433 0.98368 0.90324 1.21582 1.01335 0.95177 0.96845 1.22136 1.02204 0.96144 0.96471 1.21148 0.75342 0.97241 0.96296 1.22302 1.03525 0.92638 1.03831 1.92783 1.31996 1.97485 1.97672 1.22330 0.98314 0.90270 0.96784 0.92176 0.92558 0.94838 0.92907 0.95533 0.93168 0.96068 0.91580 0.91841 0.89202 0.88759 0.89854 0.89803 0.89402 0.92010 0.93572 0.94226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.08 9.78 71.98 0.70 -4.38 16 2 C -0.10 -4.61 5.17 30.60 0.16 -4.46 16 3 C 0.20 9.91 1.49 44.17 0.07 9.98 16 4 H 0.00 0.24 6.61 -2.39 -0.02 0.22 16 5 C -0.62 -33.50 6.91 25.60 0.18 -33.32 16 6 H 0.05 2.60 6.07 -2.91 -0.02 2.58 16 7 C -0.02 -1.32 5.46 84.66 0.46 -0.86 16 8 N -0.94 -56.58 13.63 21.45 0.29 -56.29 16 9 Si 1.11 49.63 29.91 68.60 2.05 51.68 16 10 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 12 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 13 N -0.53 -22.57 3.95 -875.52 -3.46 -26.03 16 14 C 0.06 2.11 4.81 86.33 0.42 2.53 16 15 C -0.11 -3.23 5.97 30.65 0.18 -3.05 16 16 C -0.13 -3.48 5.07 30.67 0.16 -3.32 16 17 C 0.12 3.72 1.27 -10.74 -0.01 3.71 16 18 C -0.17 -4.06 8.94 71.98 0.64 -3.41 16 19 F -0.22 -7.83 16.35 44.97 0.74 -7.09 16 20 C 0.05 2.11 4.16 86.33 0.36 2.47 16 21 H 0.06 2.31 7.69 -2.39 -0.02 2.29 16 22 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 23 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.05 2.31 6.14 -2.39 -0.01 2.30 16 25 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.26 15.89 6.66 -92.71 -0.62 15.27 16 27 H 0.02 0.86 6.36 -2.39 -0.02 0.85 16 28 H 0.07 2.51 5.97 -2.39 -0.01 2.49 16 29 H 0.06 1.93 7.91 -2.39 -0.02 1.91 16 30 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.05 2.04 8.08 -2.39 -0.02 2.02 16 37 H 0.04 1.70 7.44 -2.39 -0.02 1.68 16 Total: -1.00 -62.49 286.39 4.11 -58.38 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 1.18 Total: 13.45 kcal Atomic # 6 Polarization: -37.42 SS G_CDS: 3.31 Total: -34.11 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: -3.17 Total: -82.32 kcal Atomic # 9 Polarization: -7.83 SS G_CDS: 0.74 Total: -7.09 kcal Atomic # 14 Polarization: 49.63 SS G_CDS: 2.05 Total: 51.68 kcal Total: -62.49 4.11 -58.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166287.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.016 kcal (2) G-P(sol) polarization free energy of solvation -62.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds