Wall clock time and date at job start Sun Mar 29 2020 21:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46652 * 2 1 4 4 H 1.08999 * 109.46858 * 57.12994 * 3 2 1 5 5 C 1.50700 * 109.47059 * 177.12673 * 3 2 1 6 6 H 1.08001 * 120.00077 * 119.99616 * 5 3 2 7 7 C 1.37874 * 120.00196 * 299.72661 * 5 3 2 8 8 N 1.31517 * 120.00421 * 180.27343 * 7 5 3 9 9 Si 1.86802 * 120.00002 * 0.27337 * 7 5 3 10 10 H 1.48503 * 109.46981 * 90.00008 * 9 7 5 11 11 H 1.48498 * 109.47588 * 210.00148 * 9 7 5 12 12 H 1.48507 * 109.47088 * 330.00186 * 9 7 5 13 13 N 1.46896 * 109.47282 * 297.12762 * 3 2 1 14 14 C 1.47636 * 110.99994 * 296.70742 * 13 3 2 15 15 C 1.50818 * 108.05297 * 150.34982 * 14 13 3 16 16 C 1.53813 * 111.62495 * 95.05925 * 15 14 13 17 17 C 1.54174 * 111.96860 * 319.03973 * 16 15 14 18 18 H 1.08996 * 108.85303 * 79.29727 * 17 16 15 19 19 F 1.39904 * 108.85647 * 197.68891 * 17 16 15 20 20 C 1.50757 * 112.61051 * 318.49207 * 17 16 15 21 21 C 1.39777 * 111.00117 * 167.81926 * 13 3 2 22 22 H 1.09005 * 109.46871 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47520 * 299.99878 * 1 2 3 24 24 H 1.08997 * 109.47330 * 60.00266 * 1 2 3 25 25 H 1.09001 * 109.47520 * 240.00122 * 2 1 3 26 26 H 1.08997 * 109.47330 * 119.99734 * 2 1 3 27 27 H 0.96996 * 120.00109 * 180.02562 * 8 7 5 28 28 H 1.09003 * 109.74233 * 269.98779 * 14 13 3 29 29 H 1.08998 * 109.74798 * 30.70786 * 14 13 3 30 30 H 1.08996 * 109.04827 * 334.49903 * 15 14 13 31 31 H 1.09004 * 108.98768 * 215.57235 * 15 14 13 32 32 H 1.09004 * 108.98019 * 198.40012 * 16 15 14 33 33 H 1.08996 * 108.98881 * 79.67986 * 16 15 14 34 34 H 1.09007 * 109.54481 * 333.15346 * 20 17 16 35 35 H 1.08999 * 109.54779 * 212.88594 * 20 17 16 36 36 H 1.09000 * 109.01792 * 309.71414 * 21 13 3 37 37 H 1.08996 * 109.02411 * 68.53146 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 1 1.6350 1.9710 0.8631 5 6 3.5452 1.4433 0.0712 6 1 4.1230 1.8975 -0.7201 7 6 4.1846 0.8690 1.1493 8 7 5.4982 0.8743 1.2141 9 14 3.1852 0.0831 2.5179 10 1 2.9588 -1.3507 2.2049 11 1 3.9250 0.1990 3.8003 12 1 1.8773 0.7765 2.6366 13 7 1.6076 2.1147 -1.2326 14 6 2.2017 1.4724 -2.4217 15 6 1.2471 1.6513 -3.5756 16 6 1.6095 2.8809 -4.4256 17 6 2.0309 4.0808 -3.5540 18 1 3.0636 3.9392 -3.2355 19 9 1.9533 5.2473 -4.3225 20 6 1.1622 4.2434 -2.3327 21 6 1.8128 3.4948 -1.1489 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 5.9480 0.4699 1.9723 28 1 3.1560 1.9438 -2.6568 29 1 2.3525 0.4101 -2.2298 30 1 0.2367 1.7735 -3.1856 31 1 1.2803 0.7616 -4.2045 32 1 0.7447 3.1647 -5.0253 33 1 2.4316 2.6212 -5.0925 34 1 0.1746 3.8262 -2.5295 35 1 1.0704 5.3017 -2.0888 36 1 1.3828 3.8620 -0.2171 37 1 2.8841 3.6953 -1.1474 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166446.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:39 Heat of formation + Delta-G solvation = -52.716306 kcal Electronic energy + Delta-G solvation = -17385.193756 eV Core-core repulsion = 14690.566815 eV Total energy + Delta-G solvation = -2694.626941 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.38317 -38.91832 -35.03573 -32.37599 -32.00048 -30.88227 -27.48793 -25.38591 -24.33697 -22.65696 -20.91527 -19.78113 -19.07200 -16.74661 -16.27580 -15.81847 -15.15178 -14.84136 -14.59797 -14.03243 -13.32558 -13.13989 -12.87792 -12.78905 -12.60913 -12.03301 -11.95117 -11.56285 -11.44803 -11.22735 -10.97306 -10.88152 -10.43474 -10.21090 -10.13843 -10.00985 -9.92060 -9.61231 -9.52706 -9.21926 -8.60169 -7.15222 -6.15183 -4.16147 3.23047 3.34400 3.36040 4.34173 4.63221 4.81376 4.98343 5.05384 5.16166 5.29793 5.45281 5.55917 5.76428 5.88425 5.96794 6.01583 6.08229 6.11253 6.17511 6.23588 6.29328 6.40222 6.51964 6.53961 6.65864 6.70764 6.79281 6.83596 6.93309 7.08025 7.25763 7.54272 8.08633 8.33763 8.46028 8.86855 9.48333 10.97697 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.033392 B = 0.008793 C = 0.007923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.321290 B = 3183.627624 C = 3533.262309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.122 4.122 3 C 0.186 3.814 4 H 0.037 0.963 5 C -0.544 4.544 6 H 0.074 0.926 7 C 0.074 3.926 8 N -0.897 5.897 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.298 1.298 12 H -0.264 1.264 13 N -0.544 5.544 14 C 0.068 3.932 15 C -0.114 4.114 16 C -0.138 4.138 17 C 0.089 3.911 18 H 0.078 0.922 19 F -0.227 7.227 20 C -0.145 4.145 21 C 0.085 3.915 22 H 0.032 0.968 23 H 0.040 0.960 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.046 0.954 27 H 0.264 0.736 28 H 0.037 0.963 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.112 1.961 -6.878 11.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.160 4.160 3 C 0.079 3.921 4 H 0.055 0.945 5 C -0.583 4.583 6 H 0.092 0.908 7 C -0.129 4.129 8 N -0.535 5.535 9 Si 0.718 3.282 10 H -0.205 1.205 11 H -0.226 1.226 12 H -0.189 1.189 13 N -0.267 5.267 14 C -0.059 4.059 15 C -0.152 4.152 16 C -0.176 4.176 17 C 0.053 3.947 18 H 0.096 0.904 19 F -0.208 7.208 20 C -0.183 4.183 21 C -0.046 4.046 22 H 0.051 0.949 23 H 0.060 0.940 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -9.420 1.907 -6.839 11.796 hybrid contribution 0.609 -0.318 0.845 1.090 sum -8.811 1.589 -5.994 10.774 Atomic orbital electron populations 1.21722 0.97348 0.99291 1.01642 1.21962 0.94088 0.99341 1.00567 1.19711 0.94210 0.90423 0.87728 0.94506 1.21618 0.90327 1.38555 1.07791 0.90782 1.24987 0.94692 0.95398 0.97831 1.69913 1.07762 1.44826 1.30993 0.86853 0.80344 0.79906 0.81131 1.20530 1.22616 1.18901 1.59223 1.60841 1.02754 1.03880 1.21663 0.94671 1.00453 0.89103 1.21445 1.01466 0.95718 0.96619 1.22451 1.01733 0.95163 0.98259 1.21648 1.01784 0.80940 0.90305 0.90355 1.92775 1.97929 1.51770 1.78294 1.22167 1.00331 1.01154 0.94647 1.20665 0.98424 0.89033 0.96440 0.94879 0.94045 0.91883 0.92116 0.93628 0.92643 0.94443 0.90126 0.90706 0.92145 0.91574 0.91724 0.90215 0.90829 0.91502 0.95146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.78 37.15 0.36 -2.11 16 2 C -0.12 -2.52 4.79 -26.73 -0.13 -2.65 16 3 C 0.19 4.14 1.27 -68.86 -0.09 4.05 16 4 H 0.04 0.87 6.84 -51.93 -0.36 0.51 16 5 C -0.54 -14.40 7.89 -34.44 -0.27 -14.67 16 6 H 0.07 2.15 6.77 -52.49 -0.36 1.79 16 7 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 8 N -0.90 -26.77 13.96 55.43 0.77 -26.00 16 9 Si 0.89 21.45 24.40 -169.99 -4.15 17.30 16 10 H -0.28 -6.59 6.85 56.52 0.39 -6.20 16 11 H -0.30 -7.31 7.11 56.52 0.40 -6.90 16 12 H -0.26 -6.12 6.52 56.52 0.37 -5.75 16 13 N -0.54 -10.27 3.24 -233.38 -0.76 -11.03 16 14 C 0.07 1.22 4.13 -4.51 -0.02 1.20 16 15 C -0.11 -1.62 5.41 -27.40 -0.15 -1.77 16 16 C -0.14 -1.87 5.63 -25.69 -0.14 -2.01 16 17 C 0.09 1.35 3.33 -27.24 -0.09 1.26 16 18 H 0.08 1.28 6.58 -51.93 -0.34 0.94 16 19 F -0.23 -3.63 16.96 2.25 0.04 -3.59 16 20 C -0.14 -2.17 5.40 -27.11 -0.15 -2.32 16 21 C 0.08 1.53 4.70 -6.75 -0.03 1.50 16 22 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 1.04 7.69 -51.93 -0.40 0.64 16 25 H 0.06 1.23 6.03 -51.93 -0.31 0.92 16 26 H 0.05 1.02 3.25 -51.93 -0.17 0.85 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.04 0.72 6.11 -51.93 -0.32 0.40 16 29 H 0.08 1.53 5.63 -51.93 -0.29 1.23 16 30 H 0.07 1.07 7.26 -51.93 -0.38 0.69 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.15 7.11 -51.93 -0.37 0.78 16 35 H 0.07 1.03 8.05 -51.93 -0.42 0.62 16 36 H 0.07 1.20 7.77 -51.93 -0.40 0.80 16 37 H 0.03 0.62 6.71 -51.93 -0.35 0.28 16 LS Contribution 271.63 15.07 4.09 4.09 Total: -1.00 -28.01 271.63 -6.55 -34.57 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -5.75 Total: 0.23 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -0.80 Total: -15.58 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.02 Total: -37.03 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.04 Total: -3.59 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.15 Total: 17.30 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.01 -6.55 -34.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166446.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.150 kcal (2) G-P(sol) polarization free energy of solvation -28.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds