Wall clock time and date at job start Sun Mar 29 2020 21:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46652 * 2 1 4 4 H 1.08999 * 109.46858 * 57.12994 * 3 2 1 5 5 C 1.50700 * 109.47059 * 177.12673 * 3 2 1 6 6 H 1.08001 * 120.00077 * 119.99616 * 5 3 2 7 7 C 1.37874 * 120.00196 * 299.72661 * 5 3 2 8 8 N 1.31517 * 120.00421 * 180.27343 * 7 5 3 9 9 Si 1.86802 * 120.00002 * 0.27337 * 7 5 3 10 10 H 1.48503 * 109.46981 * 90.00008 * 9 7 5 11 11 H 1.48498 * 109.47588 * 210.00148 * 9 7 5 12 12 H 1.48507 * 109.47088 * 330.00186 * 9 7 5 13 13 N 1.46896 * 109.47282 * 297.12762 * 3 2 1 14 14 C 1.47636 * 110.99994 * 296.70742 * 13 3 2 15 15 C 1.50818 * 108.05297 * 150.34982 * 14 13 3 16 16 C 1.53813 * 111.62495 * 95.05925 * 15 14 13 17 17 C 1.54174 * 111.96860 * 319.03973 * 16 15 14 18 18 H 1.08996 * 108.85303 * 79.29727 * 17 16 15 19 19 F 1.39904 * 108.85647 * 197.68891 * 17 16 15 20 20 C 1.50757 * 112.61051 * 318.49207 * 17 16 15 21 21 C 1.39777 * 111.00117 * 167.81926 * 13 3 2 22 22 H 1.09005 * 109.46871 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47520 * 299.99878 * 1 2 3 24 24 H 1.08997 * 109.47330 * 60.00266 * 1 2 3 25 25 H 1.09001 * 109.47520 * 240.00122 * 2 1 3 26 26 H 1.08997 * 109.47330 * 119.99734 * 2 1 3 27 27 H 0.96996 * 120.00109 * 180.02562 * 8 7 5 28 28 H 1.09003 * 109.74233 * 269.98779 * 14 13 3 29 29 H 1.08998 * 109.74798 * 30.70786 * 14 13 3 30 30 H 1.08996 * 109.04827 * 334.49903 * 15 14 13 31 31 H 1.09004 * 108.98768 * 215.57235 * 15 14 13 32 32 H 1.09004 * 108.98019 * 198.40012 * 16 15 14 33 33 H 1.08996 * 108.98881 * 79.67986 * 16 15 14 34 34 H 1.09007 * 109.54481 * 333.15346 * 20 17 16 35 35 H 1.08999 * 109.54779 * 212.88594 * 20 17 16 36 36 H 1.09000 * 109.01792 * 309.71414 * 21 13 3 37 37 H 1.08996 * 109.02411 * 68.53146 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 1 1.6350 1.9710 0.8631 5 6 3.5452 1.4433 0.0712 6 1 4.1230 1.8975 -0.7201 7 6 4.1846 0.8690 1.1493 8 7 5.4982 0.8743 1.2141 9 14 3.1852 0.0831 2.5179 10 1 2.9588 -1.3507 2.2049 11 1 3.9250 0.1990 3.8003 12 1 1.8773 0.7765 2.6366 13 7 1.6076 2.1147 -1.2326 14 6 2.2017 1.4724 -2.4217 15 6 1.2471 1.6513 -3.5756 16 6 1.6095 2.8809 -4.4256 17 6 2.0309 4.0808 -3.5540 18 1 3.0636 3.9392 -3.2355 19 9 1.9533 5.2473 -4.3225 20 6 1.1622 4.2434 -2.3327 21 6 1.8128 3.4948 -1.1489 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 5.9480 0.4699 1.9723 28 1 3.1560 1.9438 -2.6568 29 1 2.3525 0.4101 -2.2298 30 1 0.2367 1.7735 -3.1856 31 1 1.2803 0.7616 -4.2045 32 1 0.7447 3.1647 -5.0253 33 1 2.4316 2.6212 -5.0925 34 1 0.1746 3.8262 -2.5295 35 1 1.0704 5.3017 -2.0888 36 1 1.3828 3.8620 -0.2171 37 1 2.8841 3.6953 -1.1474 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166446.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:39 Heat of formation + Delta-G solvation = -69.842338 kcal Electronic energy + Delta-G solvation = -17385.936397 eV Core-core repulsion = 14690.566815 eV Total energy + Delta-G solvation = -2695.369581 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.64579 -40.43768 -36.56851 -34.21594 -33.58010 -32.27449 -29.23646 -26.84181 -25.74879 -24.34775 -22.39711 -21.29167 -20.54151 -18.68657 -17.75568 -17.20444 -16.63805 -16.31276 -16.11858 -15.62156 -15.06232 -14.50361 -14.38615 -14.20398 -14.04472 -13.66506 -13.63054 -13.01614 -12.83621 -12.61318 -12.58790 -12.44912 -12.02136 -11.76654 -11.61854 -11.46813 -11.27043 -11.25293 -11.14444 -11.02043 -10.67454 -8.83371 -8.31872 -6.35938 1.30178 1.35667 1.45749 2.30436 3.04206 3.22540 3.55885 3.71200 3.79533 4.00211 4.17647 4.31427 4.39401 4.46236 4.50292 4.66809 4.71938 4.77364 4.82413 4.87206 4.99858 5.06650 5.11199 5.15195 5.24399 5.28611 5.35169 5.39075 5.49644 5.53316 5.56569 5.71317 6.18021 6.42294 6.72365 6.81240 7.32912 8.84736 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.033392 B = 0.008793 C = 0.007923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.321290 B = 3183.627624 C = 3533.262309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.122 4.122 3 C 0.188 3.812 4 H 0.030 0.970 5 C -0.536 4.536 6 H 0.032 0.968 7 C 0.014 3.986 8 N -0.949 5.949 9 Si 0.948 3.052 10 H -0.267 1.267 11 H -0.304 1.304 12 H -0.244 1.244 13 N -0.529 5.529 14 C 0.069 3.931 15 C -0.104 4.104 16 C -0.133 4.133 17 C 0.088 3.912 18 H 0.055 0.945 19 F -0.229 7.229 20 C -0.131 4.131 21 C 0.084 3.916 22 H 0.055 0.945 23 H 0.042 0.958 24 H 0.073 0.927 25 H 0.060 0.940 26 H 0.032 0.968 27 H 0.264 0.736 28 H 0.011 0.989 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.067 0.933 37 H -0.006 1.006 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.200 1.444 -7.538 14.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.160 4.160 3 C 0.080 3.920 4 H 0.048 0.952 5 C -0.575 4.575 6 H 0.050 0.950 7 C -0.183 4.183 8 N -0.589 5.589 9 Si 0.776 3.224 10 H -0.193 1.193 11 H -0.232 1.232 12 H -0.168 1.168 13 N -0.251 5.251 14 C -0.058 4.058 15 C -0.141 4.141 16 C -0.171 4.171 17 C 0.052 3.948 18 H 0.073 0.927 19 F -0.210 7.210 20 C -0.169 4.169 21 C -0.046 4.046 22 H 0.074 0.926 23 H 0.062 0.938 24 H 0.092 0.908 25 H 0.078 0.922 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.029 0.971 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.116 0.884 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.012 0.988 Dipole moment (debyes) X Y Z Total from point charges -12.536 1.398 -7.525 14.688 hybrid contribution 1.663 -0.079 0.977 1.931 sum -10.873 1.319 -6.548 12.760 Atomic orbital electron populations 1.21636 0.94101 1.01051 1.02283 1.21878 0.96916 0.97275 0.99893 1.19614 0.91016 0.92209 0.89156 0.95246 1.21900 0.92797 1.36695 1.06101 0.95008 1.25838 0.95538 0.96368 1.00599 1.70071 1.09790 1.46943 1.32139 0.85854 0.79413 0.79645 0.77509 1.19268 1.23230 1.16813 1.59361 1.59876 1.02901 1.02992 1.21702 0.94772 0.99176 0.90118 1.21338 1.00433 0.97085 0.95283 1.22421 1.02882 0.93832 0.97935 1.21647 1.00701 0.81652 0.90832 0.92698 1.92770 1.97876 1.52073 1.78305 1.22037 1.00525 1.01412 0.92878 1.20701 0.96597 0.89042 0.98289 0.92594 0.93846 0.90795 0.92165 0.95029 0.92745 0.97101 0.91361 0.89711 0.89904 0.89304 0.91221 0.88370 0.89652 0.91434 0.98829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.13 9.78 71.98 0.70 -3.42 16 2 C -0.12 -4.81 4.79 30.59 0.15 -4.66 16 3 C 0.19 8.27 1.27 44.17 0.06 8.32 16 4 H 0.03 1.36 6.84 -2.39 -0.02 1.34 16 5 C -0.54 -29.34 7.89 25.60 0.20 -29.14 16 6 H 0.03 1.96 6.77 -2.91 -0.02 1.95 16 7 C 0.01 0.81 5.45 84.65 0.46 1.28 16 8 N -0.95 -58.94 13.96 21.45 0.30 -58.64 16 9 Si 0.95 44.38 24.40 68.60 1.67 46.05 16 10 H -0.27 -11.89 6.85 99.48 0.68 -11.21 16 11 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 12 H -0.24 -10.54 6.52 99.48 0.65 -9.90 16 13 N -0.53 -19.56 3.24 -892.29 -2.89 -22.45 16 14 C 0.07 2.44 4.13 85.45 0.35 2.79 16 15 C -0.10 -2.64 5.41 30.16 0.16 -2.47 16 16 C -0.13 -3.23 5.63 31.27 0.18 -3.06 16 17 C 0.09 2.55 3.33 30.26 0.10 2.65 16 18 H 0.05 1.85 6.58 -2.39 -0.02 1.83 16 19 F -0.23 -6.95 16.96 44.97 0.76 -6.18 16 20 C -0.13 -3.67 5.40 30.35 0.16 -3.51 16 21 C 0.08 3.03 4.70 88.07 0.41 3.44 16 22 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 23 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.07 2.12 7.69 -2.39 -0.02 2.10 16 25 H 0.06 2.36 6.03 -2.39 -0.01 2.35 16 26 H 0.03 1.34 3.25 -2.39 -0.01 1.33 16 27 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 28 H 0.01 0.43 6.11 -2.39 -0.01 0.42 16 29 H 0.07 2.56 5.63 -2.39 -0.01 2.55 16 30 H 0.08 2.05 7.26 -2.39 -0.02 2.03 16 31 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.10 2.46 7.11 -2.38 -0.02 2.45 16 35 H 0.08 2.22 8.05 -2.39 -0.02 2.20 16 36 H 0.07 2.40 7.77 -2.39 -0.02 2.38 16 37 H -0.01 -0.28 6.71 -2.39 -0.02 -0.29 16 Total: -1.00 -62.25 271.63 3.75 -58.51 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 0.96 Total: 10.49 kcal Atomic # 6 Polarization: -30.72 SS G_CDS: 2.94 Total: -27.78 kcal Atomic # 7 Polarization: -78.50 SS G_CDS: -2.59 Total: -81.09 kcal Atomic # 9 Polarization: -6.95 SS G_CDS: 0.76 Total: -6.18 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.67 Total: 46.05 kcal Total: -62.25 3.75 -58.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166446.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.335 kcal (2) G-P(sol) polarization free energy of solvation -62.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds