Wall clock time and date at job start Sun Mar 29 2020 21:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47113 * 2 1 4 4 H 1.08998 * 109.46994 * 303.73205 * 3 2 1 5 5 C 1.50699 * 109.46776 * 183.73674 * 3 2 1 6 6 H 1.08006 * 119.99862 * 275.33131 * 5 3 2 7 7 C 1.37872 * 120.00314 * 95.33643 * 5 3 2 8 8 N 1.31512 * 120.00059 * 187.55694 * 7 5 3 9 9 Si 1.86805 * 119.99969 * 7.54741 * 7 5 3 10 10 H 1.48502 * 109.46852 * 86.86271 * 9 7 5 11 11 H 1.48497 * 109.47115 * 206.86175 * 9 7 5 12 12 H 1.48501 * 109.47243 * 326.86559 * 9 7 5 13 13 N 1.46895 * 109.47233 * 63.73295 * 3 2 1 14 14 C 1.47796 * 110.99995 * 190.85455 * 13 3 2 15 15 C 1.45864 * 112.92415 * 153.85910 * 14 13 3 16 16 C 1.54509 * 111.58754 * 61.32478 * 15 14 13 17 17 C 1.50462 * 108.96262 * 282.76317 * 16 15 14 18 18 H 1.09000 * 108.76895 * 331.29332 * 17 16 15 19 19 F 1.39902 * 108.76935 * 213.13078 * 17 16 15 20 20 C 1.54432 * 112.96135 * 92.01046 * 17 16 15 21 21 C 1.44273 * 110.99831 * 68.88523 * 13 3 2 22 22 H 1.08997 * 109.47622 * 300.00811 * 1 2 3 23 23 H 1.09005 * 109.47268 * 60.00160 * 1 2 3 24 24 H 1.09001 * 109.47680 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47043 * 239.99677 * 2 1 3 26 26 H 1.09000 * 109.46878 * 119.99550 * 2 1 3 27 27 H 0.97003 * 120.00129 * 179.97438 * 8 7 5 28 28 H 1.09008 * 108.79186 * 32.96906 * 14 13 3 29 29 H 1.09001 * 108.70729 * 274.68466 * 14 13 3 30 30 H 1.09001 * 109.05783 * 300.77902 * 15 14 13 31 31 H 1.09003 * 109.05472 * 181.86617 * 15 14 13 32 32 H 1.09004 * 109.57124 * 42.63500 * 16 15 14 33 33 H 1.08994 * 109.57517 * 162.88400 * 16 15 14 34 34 H 1.08993 * 108.92599 * 197.69798 * 20 17 16 35 35 H 1.09001 * 108.74100 * 79.14627 * 20 17 16 36 36 H 1.09002 * 108.98014 * 339.95086 * 21 13 3 37 37 H 1.08999 * 108.98498 * 98.75303 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6231 1.9753 -0.8546 5 6 3.5441 1.4434 -0.0926 6 1 4.1403 1.3367 0.8017 7 6 4.1593 1.5807 -1.3188 8 7 5.4621 1.4333 -1.4211 9 14 3.1421 1.9759 -2.8350 10 1 2.9823 3.4474 -2.9541 11 1 3.8303 1.4533 -4.0427 12 1 1.8052 1.3410 -2.7135 13 7 1.6254 2.1085 1.2419 14 6 1.8705 3.5642 1.1696 15 6 0.9813 4.3336 2.0327 16 6 1.1658 3.9566 3.5197 17 6 0.4719 2.6475 3.7819 18 1 -0.3641 2.5489 3.0895 19 9 -0.0283 2.6569 5.0884 20 6 1.4025 1.4272 3.6094 21 6 2.3218 1.5599 2.3801 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 5.8949 1.5295 -2.2839 28 1 1.7314 3.8930 0.1397 29 1 2.9016 3.7601 1.4639 30 1 -0.0514 4.1409 1.7421 31 1 1.1932 5.3953 1.9059 32 1 2.2283 3.8576 3.7422 33 1 0.7316 4.7327 4.1498 34 1 0.7929 0.5304 3.4997 35 1 2.0191 1.3280 4.5027 36 1 2.7080 0.5748 2.1183 37 1 3.1575 2.2124 2.6327 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166448.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:43 Heat of formation + Delta-G solvation = -61.903309 kcal Electronic energy + Delta-G solvation = -17407.322601 eV Core-core repulsion = 14712.297282 eV Total energy + Delta-G solvation = -2695.025319 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -47.31080 -38.71673 -34.95740 -32.20405 -31.74782 -31.30594 -27.45017 -25.28140 -24.27266 -22.75813 -20.50440 -20.13823 -18.68233 -16.90919 -16.10871 -15.60467 -15.25949 -14.77744 -14.26036 -13.97785 -13.32119 -13.22589 -12.82397 -12.73260 -12.48639 -12.16273 -11.93332 -11.53149 -11.27650 -11.05316 -10.93232 -10.84747 -10.27645 -10.23751 -10.12700 -9.91894 -9.87880 -9.75969 -9.69681 -9.28672 -8.59658 -7.27302 -6.17793 -4.18430 3.20987 3.30992 3.32663 4.33164 4.66172 4.87765 5.04380 5.13654 5.20235 5.32805 5.59022 5.64531 5.75642 5.94341 5.96502 6.09196 6.12554 6.15788 6.25333 6.32504 6.37150 6.49425 6.58559 6.64414 6.66555 6.70343 6.78215 6.81746 7.00425 7.17276 7.25059 7.54577 8.01504 8.22157 8.41733 8.86799 9.46990 10.95108 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.032652 B = 0.008925 C = 0.008380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.333648 B = 3136.639890 C = 3340.410318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 C 0.178 3.822 4 H 0.042 0.958 5 C -0.545 4.545 6 H 0.076 0.924 7 C 0.077 3.923 8 N -0.895 5.895 9 Si 0.870 3.130 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.261 1.261 13 N -0.524 5.524 14 C 0.057 3.943 15 C -0.108 4.108 16 C -0.141 4.141 17 C 0.100 3.900 18 H 0.083 0.917 19 F -0.232 7.232 20 C -0.133 4.133 21 C 0.067 3.933 22 H 0.058 0.942 23 H 0.039 0.961 24 H 0.032 0.968 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.264 0.736 28 H 0.060 0.940 29 H 0.041 0.959 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.052 2.657 6.062 11.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.146 4.146 3 C 0.071 3.929 4 H 0.060 0.940 5 C -0.584 4.584 6 H 0.094 0.906 7 C -0.126 4.126 8 N -0.532 5.532 9 Si 0.698 3.302 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.186 1.186 13 N -0.247 5.247 14 C -0.071 4.071 15 C -0.146 4.146 16 C -0.179 4.179 17 C 0.064 3.936 18 H 0.101 0.899 19 F -0.213 7.213 20 C -0.172 4.172 21 C -0.063 4.063 22 H 0.077 0.923 23 H 0.058 0.942 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -9.421 2.569 6.010 11.466 hybrid contribution 0.578 0.315 -1.004 1.201 sum -8.843 2.885 5.006 10.563 Atomic orbital electron populations 1.21755 0.97842 0.99179 1.01326 1.21717 0.93373 0.98800 1.00717 1.19874 0.94304 0.90952 0.87788 0.93971 1.21651 0.90366 1.51187 0.95196 0.90573 1.25038 0.94666 0.94215 0.98696 1.69932 1.09181 1.48921 1.25174 0.86954 0.81170 0.79153 0.82970 1.20219 1.21484 1.18556 1.61978 1.56411 1.02177 1.04164 1.20780 0.97791 0.89348 0.99143 1.20564 1.01184 0.99184 0.93626 1.21951 1.01878 0.96194 0.97903 1.21434 0.97604 0.96281 0.78300 0.89922 1.92764 1.89406 1.97802 1.41319 1.22619 0.98447 0.96948 0.99195 1.21658 0.93532 1.01317 0.89761 0.92278 0.94200 0.94931 0.92940 0.92948 0.92640 0.92146 0.94077 0.91698 0.91900 0.91018 0.91362 0.91583 0.91938 0.90441 0.94417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.79 37.16 0.36 -2.12 16 2 C -0.11 -2.18 5.32 -26.73 -0.14 -2.33 16 3 C 0.18 3.90 1.36 -68.87 -0.09 3.81 16 4 H 0.04 0.97 4.73 -51.93 -0.25 0.73 16 5 C -0.55 -14.19 7.76 -34.44 -0.27 -14.46 16 6 H 0.08 2.17 6.71 -52.48 -0.35 1.82 16 7 C 0.08 2.11 5.47 -17.82 -0.10 2.02 16 8 N -0.89 -26.37 13.96 55.43 0.77 -25.60 16 9 Si 0.87 20.69 27.14 -169.99 -4.61 16.08 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.26 -5.95 6.62 56.52 0.37 -5.58 16 13 N -0.52 -9.95 3.58 -232.94 -0.83 -10.78 16 14 C 0.06 1.03 4.47 -6.71 -0.03 1.00 16 15 C -0.11 -1.55 5.53 -29.32 -0.16 -1.71 16 16 C -0.14 -1.98 5.34 -27.21 -0.15 -2.13 16 17 C 0.10 1.48 3.46 -27.25 -0.09 1.39 16 18 H 0.08 1.23 7.39 -51.93 -0.38 0.85 16 19 F -0.23 -3.66 16.96 2.25 0.04 -3.62 16 20 C -0.13 -2.06 5.87 -25.42 -0.15 -2.21 16 21 C 0.07 1.22 3.53 -4.67 -0.02 1.20 16 22 H 0.06 0.99 7.71 -51.93 -0.40 0.59 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.05 1.05 6.46 -51.93 -0.34 0.71 16 27 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.06 1.14 7.56 -51.92 -0.39 0.75 16 29 H 0.04 0.81 7.23 -51.93 -0.38 0.43 16 30 H 0.06 0.91 7.59 -51.93 -0.39 0.51 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.05 7.15 -51.93 -0.37 0.68 16 33 H 0.07 0.87 8.05 -51.93 -0.42 0.45 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.08 1.55 5.32 -51.93 -0.28 1.27 16 37 H 0.04 0.73 6.40 -51.93 -0.33 0.39 16 LS Contribution 279.83 15.07 4.22 4.22 Total: -1.00 -27.51 279.83 -7.23 -34.74 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -5.98 Total: 0.50 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -0.83 Total: -15.54 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: -0.06 Total: -36.38 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.04 Total: -3.62 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.61 Total: 16.08 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.51 -7.23 -34.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166448.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.163 kcal (2) G-P(sol) polarization free energy of solvation -27.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds