Wall clock time and date at job start Sun Mar 29 2020 21:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47113 * 2 1 4 4 H 1.08998 * 109.46994 * 303.73205 * 3 2 1 5 5 C 1.50699 * 109.46776 * 183.73674 * 3 2 1 6 6 H 1.08006 * 119.99862 * 275.33131 * 5 3 2 7 7 C 1.37872 * 120.00314 * 95.33643 * 5 3 2 8 8 N 1.31512 * 120.00059 * 187.55694 * 7 5 3 9 9 Si 1.86805 * 119.99969 * 7.54741 * 7 5 3 10 10 H 1.48502 * 109.46852 * 86.86271 * 9 7 5 11 11 H 1.48497 * 109.47115 * 206.86175 * 9 7 5 12 12 H 1.48501 * 109.47243 * 326.86559 * 9 7 5 13 13 N 1.46895 * 109.47233 * 63.73295 * 3 2 1 14 14 C 1.47796 * 110.99995 * 190.85455 * 13 3 2 15 15 C 1.45864 * 112.92415 * 153.85910 * 14 13 3 16 16 C 1.54509 * 111.58754 * 61.32478 * 15 14 13 17 17 C 1.50462 * 108.96262 * 282.76317 * 16 15 14 18 18 H 1.09000 * 108.76895 * 331.29332 * 17 16 15 19 19 F 1.39902 * 108.76935 * 213.13078 * 17 16 15 20 20 C 1.54432 * 112.96135 * 92.01046 * 17 16 15 21 21 C 1.44273 * 110.99831 * 68.88523 * 13 3 2 22 22 H 1.08997 * 109.47622 * 300.00811 * 1 2 3 23 23 H 1.09005 * 109.47268 * 60.00160 * 1 2 3 24 24 H 1.09001 * 109.47680 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47043 * 239.99677 * 2 1 3 26 26 H 1.09000 * 109.46878 * 119.99550 * 2 1 3 27 27 H 0.97003 * 120.00129 * 179.97438 * 8 7 5 28 28 H 1.09008 * 108.79186 * 32.96906 * 14 13 3 29 29 H 1.09001 * 108.70729 * 274.68466 * 14 13 3 30 30 H 1.09001 * 109.05783 * 300.77902 * 15 14 13 31 31 H 1.09003 * 109.05472 * 181.86617 * 15 14 13 32 32 H 1.09004 * 109.57124 * 42.63500 * 16 15 14 33 33 H 1.08994 * 109.57517 * 162.88400 * 16 15 14 34 34 H 1.08993 * 108.92599 * 197.69798 * 20 17 16 35 35 H 1.09001 * 108.74100 * 79.14627 * 20 17 16 36 36 H 1.09002 * 108.98014 * 339.95086 * 21 13 3 37 37 H 1.08999 * 108.98498 * 98.75303 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6231 1.9753 -0.8546 5 6 3.5441 1.4434 -0.0926 6 1 4.1403 1.3367 0.8017 7 6 4.1593 1.5807 -1.3188 8 7 5.4621 1.4333 -1.4211 9 14 3.1421 1.9759 -2.8350 10 1 2.9823 3.4474 -2.9541 11 1 3.8303 1.4533 -4.0427 12 1 1.8052 1.3410 -2.7135 13 7 1.6254 2.1085 1.2419 14 6 1.8705 3.5642 1.1696 15 6 0.9813 4.3336 2.0327 16 6 1.1658 3.9566 3.5197 17 6 0.4719 2.6475 3.7819 18 1 -0.3641 2.5489 3.0895 19 9 -0.0283 2.6569 5.0884 20 6 1.4025 1.4272 3.6094 21 6 2.3218 1.5599 2.3801 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 5.8949 1.5295 -2.2839 28 1 1.7314 3.8930 0.1397 29 1 2.9016 3.7601 1.4639 30 1 -0.0514 4.1409 1.7421 31 1 1.1932 5.3953 1.9059 32 1 2.2283 3.8576 3.7422 33 1 0.7316 4.7327 4.1498 34 1 0.7929 0.5304 3.4997 35 1 2.0191 1.3280 4.5027 36 1 2.7080 0.5748 2.1183 37 1 3.1575 2.2124 2.6327 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166448.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:42 Heat of formation + Delta-G solvation = -77.826310 kcal Electronic energy + Delta-G solvation = -17408.013074 eV Core-core repulsion = 14712.297282 eV Total energy + Delta-G solvation = -2695.715792 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.52248 -40.23710 -36.47511 -34.19865 -33.12352 -32.75278 -29.18217 -26.80170 -25.66130 -24.45287 -21.98431 -21.42833 -20.36645 -18.81894 -17.56323 -16.93295 -16.57772 -16.37173 -15.91141 -15.47885 -14.73263 -14.66034 -14.63687 -14.08633 -13.89547 -13.72576 -13.58983 -12.91047 -12.89075 -12.67853 -12.52339 -12.15257 -11.86546 -11.71032 -11.64122 -11.45495 -11.36684 -11.32009 -11.19330 -11.08109 -10.64625 -8.94605 -8.30727 -6.33999 1.31819 1.35030 1.44480 2.32555 3.02545 3.28325 3.59455 3.85796 3.92973 4.06338 4.26777 4.34516 4.40395 4.47910 4.58849 4.66922 4.73502 4.74248 4.91730 4.95470 5.05109 5.11159 5.17592 5.25666 5.27009 5.31524 5.37347 5.41678 5.49684 5.51477 5.61400 5.70932 6.17521 6.44423 6.57600 6.76163 7.34948 8.85755 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.032652 B = 0.008925 C = 0.008380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.333648 B = 3136.639890 C = 3340.410318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.107 4.107 3 C 0.179 3.821 4 H 0.040 0.960 5 C -0.536 4.536 6 H 0.037 0.963 7 C 0.018 3.982 8 N -0.947 5.947 9 Si 0.930 3.070 10 H -0.268 1.268 11 H -0.291 1.291 12 H -0.241 1.241 13 N -0.511 5.511 14 C 0.059 3.941 15 C -0.101 4.101 16 C -0.138 4.138 17 C 0.103 3.897 18 H 0.090 0.910 19 F -0.234 7.234 20 C -0.126 4.126 21 C 0.074 3.926 22 H 0.066 0.934 23 H 0.042 0.958 24 H 0.053 0.947 25 H 0.037 0.963 26 H 0.049 0.951 27 H 0.263 0.737 28 H 0.051 0.949 29 H 0.015 0.985 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.839 3.240 6.281 13.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.146 4.146 3 C 0.071 3.929 4 H 0.058 0.942 5 C -0.575 4.575 6 H 0.056 0.944 7 C -0.180 4.180 8 N -0.587 5.587 9 Si 0.755 3.245 10 H -0.194 1.194 11 H -0.218 1.218 12 H -0.164 1.164 13 N -0.234 5.234 14 C -0.069 4.069 15 C -0.139 4.139 16 C -0.176 4.176 17 C 0.067 3.933 18 H 0.108 0.892 19 F -0.215 7.215 20 C -0.164 4.164 21 C -0.055 4.055 22 H 0.085 0.915 23 H 0.061 0.939 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -12.235 3.155 6.253 14.098 hybrid contribution 1.526 0.114 -0.973 1.813 sum -10.709 3.269 5.280 12.379 Atomic orbital electron populations 1.21644 0.94782 1.00817 1.01800 1.21625 0.96020 0.97032 0.99900 1.19817 0.91320 0.92521 0.89194 0.94198 1.21910 0.92625 1.49351 0.93618 0.94438 1.25858 0.95568 0.94502 1.02069 1.70082 1.11222 1.51446 1.25917 0.85979 0.80338 0.79350 0.78841 1.19373 1.21783 1.16424 1.62088 1.55526 1.02741 1.03039 1.20877 0.97453 0.88975 0.99608 1.20493 1.00807 0.99642 0.92971 1.21926 1.01308 0.96472 0.97917 1.21423 0.97559 0.96066 0.78256 0.89190 1.92765 1.89389 1.97790 1.41567 1.22501 0.98278 0.98012 0.97628 1.21565 0.93812 0.99475 0.90683 0.91539 0.93914 0.92778 0.94447 0.93276 0.92774 0.93033 0.96650 0.90324 0.89797 0.92107 0.89334 0.90682 0.91188 0.92674 0.96320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.19 9.79 71.98 0.70 -3.49 16 2 C -0.11 -4.23 5.32 30.59 0.16 -4.07 16 3 C 0.18 7.78 1.36 44.17 0.06 7.84 16 4 H 0.04 1.77 4.73 -2.39 -0.01 1.76 16 5 C -0.54 -28.69 7.76 25.60 0.20 -28.49 16 6 H 0.04 2.25 6.71 -2.91 -0.02 2.23 16 7 C 0.02 1.02 5.47 84.65 0.46 1.48 16 8 N -0.95 -57.83 13.96 21.45 0.30 -57.53 16 9 Si 0.93 42.69 27.14 68.60 1.86 44.55 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 11 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 12 H -0.24 -10.18 6.62 99.48 0.66 -9.52 16 13 N -0.51 -18.94 3.58 -890.89 -3.19 -22.13 16 14 C 0.06 2.06 4.47 83.94 0.38 2.44 16 15 C -0.10 -2.65 5.53 28.92 0.16 -2.49 16 16 C -0.14 -3.53 5.34 30.29 0.16 -3.36 16 17 C 0.10 2.77 3.46 30.26 0.10 2.87 16 18 H 0.09 2.35 7.39 -2.39 -0.02 2.33 16 19 F -0.23 -6.67 16.96 44.97 0.76 -5.91 16 20 C -0.13 -3.67 5.87 31.44 0.18 -3.48 16 21 C 0.07 2.71 3.53 87.15 0.31 3.02 16 22 H 0.07 2.00 7.71 -2.39 -0.02 1.98 16 23 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 24 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.05 1.94 6.46 -2.39 -0.02 1.93 16 27 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 28 H 0.05 1.89 7.56 -2.38 -0.02 1.87 16 29 H 0.02 0.61 7.23 -2.39 -0.02 0.59 16 30 H 0.08 1.90 7.59 -2.39 -0.02 1.88 16 31 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.06 1.69 7.15 -2.38 -0.02 1.67 16 33 H 0.09 1.94 8.05 -2.39 -0.02 1.93 16 34 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.05 2.26 5.32 -2.39 -0.01 2.24 16 37 H 0.02 0.74 6.40 -2.39 -0.02 0.73 16 Total: -1.00 -60.08 279.83 3.60 -56.48 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 0.99 Total: 12.26 kcal Atomic # 6 Polarization: -30.61 SS G_CDS: 2.88 Total: -27.73 kcal Atomic # 7 Polarization: -76.77 SS G_CDS: -2.89 Total: -79.66 kcal Atomic # 9 Polarization: -6.67 SS G_CDS: 0.76 Total: -5.91 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 1.86 Total: 44.55 kcal Total: -60.08 3.60 -56.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166448.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.345 kcal (2) G-P(sol) polarization free energy of solvation -60.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds