Wall clock time and date at job start Sun Mar 29 2020 21:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46720 * 2 1 4 4 H 1.09005 * 109.47543 * 303.99506 * 3 2 1 5 5 C 1.50703 * 109.47183 * 183.99755 * 3 2 1 6 6 H 1.07995 * 119.99967 * 240.00438 * 5 3 2 7 7 C 1.37880 * 119.99965 * 59.99744 * 5 3 2 8 8 N 1.31510 * 119.99674 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00060 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47095 * 59.99715 * 9 7 5 11 11 H 1.48502 * 109.47141 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47114 * 300.00154 * 9 7 5 13 13 N 1.46901 * 109.47494 * 63.99659 * 3 2 1 14 14 C 1.44277 * 110.99761 * 68.59662 * 13 3 2 15 15 C 1.54065 * 111.97634 * 219.31522 * 14 13 3 16 16 C 1.54430 * 112.37294 * 318.84805 * 15 14 13 17 17 C 1.50465 * 112.95775 * 318.48809 * 16 15 14 18 18 C 1.54508 * 108.96520 * 92.01408 * 17 16 15 19 19 H 1.09001 * 109.05822 * 43.23198 * 18 17 16 20 20 F 1.39902 * 109.05855 * 162.21889 * 18 17 16 21 21 C 1.45859 * 111.58494 * 282.75941 * 18 17 16 22 22 H 1.09003 * 109.47186 * 60.00186 * 1 2 3 23 23 H 1.09003 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47336 * 300.00043 * 1 2 3 25 25 H 1.08993 * 109.47336 * 239.99957 * 2 1 3 26 26 H 1.08996 * 109.46793 * 119.99697 * 2 1 3 27 27 H 0.97007 * 119.99568 * 180.02562 * 8 7 5 28 28 H 1.08998 * 108.98253 * 339.96048 * 14 13 3 29 29 H 1.08998 * 108.97741 * 98.75596 * 14 13 3 30 30 H 1.09003 * 108.91991 * 79.63981 * 15 14 13 31 31 H 1.09003 * 108.91553 * 198.29042 * 15 14 13 32 32 H 1.08999 * 108.96456 * 197.48073 * 16 15 14 33 33 H 1.08998 * 108.64906 * 79.26668 * 16 15 14 34 34 H 1.09002 * 109.57282 * 332.13456 * 17 16 15 35 35 H 1.09004 * 109.56939 * 211.89007 * 17 16 15 36 36 H 1.08999 * 108.79657 * 182.21381 * 21 18 17 37 37 H 1.09004 * 108.79048 * 300.43659 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6193 1.9767 -0.8520 5 6 3.5437 1.4438 -0.0991 6 1 4.1361 1.8929 0.6844 7 6 4.1632 0.8715 -1.1898 8 7 3.4418 0.3249 -2.1439 9 14 6.0272 0.8724 -1.3123 10 1 6.5999 0.1445 -0.1515 11 1 6.4409 0.2017 -2.5710 12 1 6.5226 2.2723 -1.3119 13 7 1.6307 2.1066 1.2448 14 6 2.3271 1.5517 2.3799 15 6 1.4099 1.4193 3.6107 16 6 0.4847 2.6429 3.7887 17 6 1.1835 3.9498 3.5288 18 6 0.9975 4.3321 2.0434 19 1 -0.0363 4.1432 1.7541 20 9 1.2746 5.6941 1.8840 21 6 1.8816 3.5615 1.1762 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.8777 -0.0780 -2.9111 28 1 2.7088 0.5659 2.1145 29 1 3.1661 2.2001 2.6326 30 1 0.7963 0.5252 3.4996 31 1 2.0280 1.3149 4.5024 32 1 0.0972 2.6487 4.8075 33 1 -0.3531 2.5498 3.0977 34 1 2.2460 3.8458 3.7489 35 1 0.7538 4.7259 4.1622 36 1 1.7418 3.8939 0.1476 37 1 2.9142 3.7538 1.4676 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166672.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:23 Heat of formation + Delta-G solvation = -61.184597 kcal Electronic energy + Delta-G solvation = -17417.469543 eV Core-core repulsion = 14722.475389 eV Total energy + Delta-G solvation = -2694.994153 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.29276 -38.55102 -34.97025 -32.30912 -31.52475 -30.76119 -27.10882 -25.05112 -24.39913 -22.81628 -20.46730 -19.99572 -18.64182 -16.25498 -16.13322 -15.72064 -14.97312 -14.77330 -14.51548 -13.61353 -13.34933 -13.18208 -12.82788 -12.35789 -12.16781 -12.08698 -11.55979 -11.44743 -11.20294 -10.97896 -10.74137 -10.64656 -10.37456 -10.25746 -10.07827 -9.91655 -9.75657 -9.60760 -9.44899 -9.13231 -8.39731 -7.28962 -6.03292 -4.16342 3.25965 3.31369 3.34042 4.36528 4.65078 4.87354 5.08929 5.21756 5.39698 5.50181 5.62328 5.66167 5.80117 6.00283 6.05029 6.22933 6.32562 6.35957 6.41538 6.44221 6.51020 6.60351 6.64072 6.68237 6.77928 6.83722 7.10384 7.14683 7.32912 7.55640 7.73024 7.95984 8.09665 8.23698 8.44045 8.92930 9.51648 10.96626 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.025665 B = 0.009462 C = 0.008359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.717103 B = 2958.492576 C = 3348.743644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.109 4.109 3 C 0.216 3.784 4 H 0.039 0.961 5 C -0.546 4.546 6 H 0.055 0.945 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.518 5.518 14 C 0.061 3.939 15 C -0.112 4.112 16 C -0.105 4.105 17 C -0.136 4.136 18 C 0.100 3.900 19 H 0.081 0.919 20 F -0.224 7.224 21 C 0.031 3.969 22 H 0.038 0.962 23 H 0.025 0.975 24 H 0.048 0.952 25 H 0.093 0.907 26 H 0.033 0.967 27 H 0.262 0.738 28 H 0.077 0.923 29 H 0.028 0.972 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.783 2.862 8.541 10.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.147 4.147 3 C 0.110 3.890 4 H 0.056 0.944 5 C -0.585 4.585 6 H 0.073 0.927 7 C -0.133 4.133 8 N -0.522 5.522 9 Si 0.715 3.285 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.241 5.241 14 C -0.068 4.068 15 C -0.150 4.150 16 C -0.142 4.142 17 C -0.173 4.173 18 C 0.063 3.937 19 H 0.099 0.901 20 F -0.205 7.205 21 C -0.097 4.097 22 H 0.057 0.943 23 H 0.044 0.956 24 H 0.067 0.933 25 H 0.111 0.889 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.046 0.954 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.278 2.705 8.396 10.279 hybrid contribution 2.051 0.175 -0.296 2.080 sum -3.226 2.879 8.100 9.182 Atomic orbital electron populations 1.21712 0.98828 0.98448 1.00583 1.21598 0.92276 0.98908 1.01961 1.19420 0.93004 0.91170 0.85437 0.94359 1.21738 0.92579 1.38172 1.06057 0.92697 1.24908 0.97922 0.94945 0.95572 1.69860 1.35018 1.37812 1.09552 0.86732 0.86125 0.78243 0.77365 1.20315 1.21215 1.20360 1.61803 1.56739 1.00334 1.05241 1.21774 0.93648 1.00996 0.90404 1.22065 0.98012 0.97435 0.97494 1.21061 0.99197 0.93619 1.00350 1.21883 1.02205 0.98180 0.95073 1.20602 1.01179 0.75517 0.96391 0.90124 1.92772 1.95772 1.35065 1.96936 1.21266 0.97558 0.91188 0.99736 0.94290 0.95604 0.93282 0.88909 0.94817 0.92775 0.90484 0.95403 0.92323 0.93272 0.93133 0.91424 0.91272 0.91684 0.90877 0.93942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.79 37.16 0.36 -2.35 16 2 C -0.11 -2.49 5.16 -26.73 -0.14 -2.63 16 3 C 0.22 5.11 1.64 -68.86 -0.11 5.00 16 4 H 0.04 1.02 7.77 -51.93 -0.40 0.61 16 5 C -0.55 -14.22 7.13 -34.44 -0.25 -14.46 16 6 H 0.05 1.44 6.68 -52.49 -0.35 1.09 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 8 N -0.88 -24.38 11.30 55.43 0.63 -23.75 16 9 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.52 -10.35 3.59 -232.94 -0.84 -11.19 16 14 C 0.06 1.15 3.68 -4.67 -0.02 1.13 16 15 C -0.11 -1.69 6.14 -25.43 -0.16 -1.84 16 16 C -0.10 -1.43 5.44 -27.25 -0.15 -1.58 16 17 C -0.14 -1.94 5.32 -27.21 -0.14 -2.08 16 18 C 0.10 1.63 3.58 -29.32 -0.10 1.53 16 19 H 0.08 1.26 7.59 -51.93 -0.39 0.87 16 20 F -0.22 -3.90 17.01 2.25 0.04 -3.87 16 21 C 0.03 0.61 4.11 -6.71 -0.03 0.58 16 22 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.92 7.72 -51.93 -0.40 0.52 16 25 H 0.09 2.39 5.97 -51.93 -0.31 2.08 16 26 H 0.03 0.76 6.43 -51.93 -0.33 0.42 16 27 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.08 1.60 5.51 -51.93 -0.29 1.32 16 29 H 0.03 0.54 6.18 -51.93 -0.32 0.22 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.97 7.39 -51.93 -0.38 0.59 16 34 H 0.07 1.03 7.15 -51.93 -0.37 0.66 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 1.51 7.57 -51.93 -0.39 1.11 16 37 H 0.04 0.87 7.09 -51.93 -0.37 0.50 16 LS Contribution 280.27 15.07 4.22 4.22 Total: -1.00 -26.19 280.27 -7.78 -33.98 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -5.99 Total: -0.31 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -0.83 Total: -14.96 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: -0.21 Total: -34.94 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.04 Total: -3.87 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -26.19 -7.78 -33.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166672.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.209 kcal (2) G-P(sol) polarization free energy of solvation -26.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds