Wall clock time and date at job start Sun Mar 29 2020 21:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46720 * 2 1 4 4 H 1.09005 * 109.47543 * 303.99506 * 3 2 1 5 5 C 1.50703 * 109.47183 * 183.99755 * 3 2 1 6 6 H 1.07995 * 119.99967 * 240.00438 * 5 3 2 7 7 C 1.37880 * 119.99965 * 59.99744 * 5 3 2 8 8 N 1.31510 * 119.99674 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00060 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47095 * 59.99715 * 9 7 5 11 11 H 1.48502 * 109.47141 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47114 * 300.00154 * 9 7 5 13 13 N 1.46901 * 109.47494 * 63.99659 * 3 2 1 14 14 C 1.44277 * 110.99761 * 68.59662 * 13 3 2 15 15 C 1.54065 * 111.97634 * 219.31522 * 14 13 3 16 16 C 1.54430 * 112.37294 * 318.84805 * 15 14 13 17 17 C 1.50465 * 112.95775 * 318.48809 * 16 15 14 18 18 C 1.54508 * 108.96520 * 92.01408 * 17 16 15 19 19 H 1.09001 * 109.05822 * 43.23198 * 18 17 16 20 20 F 1.39902 * 109.05855 * 162.21889 * 18 17 16 21 21 C 1.45859 * 111.58494 * 282.75941 * 18 17 16 22 22 H 1.09003 * 109.47186 * 60.00186 * 1 2 3 23 23 H 1.09003 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47336 * 300.00043 * 1 2 3 25 25 H 1.08993 * 109.47336 * 239.99957 * 2 1 3 26 26 H 1.08996 * 109.46793 * 119.99697 * 2 1 3 27 27 H 0.97007 * 119.99568 * 180.02562 * 8 7 5 28 28 H 1.08998 * 108.98253 * 339.96048 * 14 13 3 29 29 H 1.08998 * 108.97741 * 98.75596 * 14 13 3 30 30 H 1.09003 * 108.91991 * 79.63981 * 15 14 13 31 31 H 1.09003 * 108.91553 * 198.29042 * 15 14 13 32 32 H 1.08999 * 108.96456 * 197.48073 * 16 15 14 33 33 H 1.08998 * 108.64906 * 79.26668 * 16 15 14 34 34 H 1.09002 * 109.57282 * 332.13456 * 17 16 15 35 35 H 1.09004 * 109.56939 * 211.89007 * 17 16 15 36 36 H 1.08999 * 108.79657 * 182.21381 * 21 18 17 37 37 H 1.09004 * 108.79048 * 300.43659 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6193 1.9767 -0.8520 5 6 3.5437 1.4438 -0.0991 6 1 4.1361 1.8929 0.6844 7 6 4.1632 0.8715 -1.1898 8 7 3.4418 0.3249 -2.1439 9 14 6.0272 0.8724 -1.3123 10 1 6.5999 0.1445 -0.1515 11 1 6.4409 0.2017 -2.5710 12 1 6.5226 2.2723 -1.3119 13 7 1.6307 2.1066 1.2448 14 6 2.3271 1.5517 2.3799 15 6 1.4099 1.4193 3.6107 16 6 0.4847 2.6429 3.7887 17 6 1.1835 3.9498 3.5288 18 6 0.9975 4.3321 2.0434 19 1 -0.0363 4.1432 1.7541 20 9 1.2746 5.6941 1.8840 21 6 1.8816 3.5615 1.1762 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.8777 -0.0780 -2.9111 28 1 2.7088 0.5659 2.1145 29 1 3.1661 2.2001 2.6326 30 1 0.7963 0.5252 3.4996 31 1 2.0280 1.3149 4.5024 32 1 0.0972 2.6487 4.8075 33 1 -0.3531 2.5498 3.0977 34 1 2.2460 3.8458 3.7489 35 1 0.7538 4.7259 4.1622 36 1 1.7418 3.8939 0.1476 37 1 2.9142 3.7538 1.4676 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166672.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:23 Heat of formation + Delta-G solvation = -75.103772 kcal Electronic energy + Delta-G solvation = -17418.073123 eV Core-core repulsion = 14722.475389 eV Total energy + Delta-G solvation = -2695.597734 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.66301 -40.12586 -36.54772 -34.11973 -33.11552 -32.28747 -28.88482 -26.71965 -25.77468 -24.57591 -22.00153 -21.46254 -20.26416 -18.18149 -17.62670 -17.22902 -16.57670 -16.30895 -16.06547 -15.12812 -14.99115 -14.70833 -14.38030 -13.93221 -13.70862 -13.36040 -13.26663 -13.10114 -12.91662 -12.76496 -12.52317 -12.14139 -12.09384 -11.64886 -11.57414 -11.48069 -11.37664 -11.16142 -11.01703 -10.95899 -10.44212 -9.04425 -8.06469 -6.27999 1.36097 1.37403 1.44160 2.37993 3.09611 3.15971 3.57178 3.86990 4.12585 4.16387 4.25927 4.40936 4.45312 4.56020 4.60290 4.73607 4.78572 4.92231 4.94745 5.04280 5.08748 5.18440 5.22796 5.33177 5.35290 5.44307 5.47616 5.51860 5.56780 5.64921 5.79850 6.08363 6.16597 6.35255 6.63370 6.92733 7.42992 8.89335 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.025665 B = 0.009462 C = 0.008359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.717103 B = 2958.492576 C = 3348.743644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.102 4.102 3 C 0.221 3.779 4 H 0.003 0.997 5 C -0.555 4.555 6 H 0.047 0.953 7 C 0.024 3.976 8 N -0.908 5.908 9 Si 0.943 3.057 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.278 1.278 13 N -0.506 5.506 14 C 0.062 3.938 15 C -0.105 4.105 16 C -0.101 4.101 17 C -0.129 4.129 18 C 0.101 3.899 19 H 0.093 0.907 20 F -0.230 7.230 21 C 0.037 3.963 22 H 0.031 0.969 23 H 0.045 0.955 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.034 0.966 27 H 0.262 0.738 28 H 0.053 0.947 29 H 0.017 0.983 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.049 0.951 37 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.458 2.979 10.496 12.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.141 4.141 3 C 0.114 3.886 4 H 0.021 0.979 5 C -0.594 4.594 6 H 0.065 0.935 7 C -0.177 4.177 8 N -0.547 5.547 9 Si 0.770 3.230 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.204 1.204 13 N -0.229 5.229 14 C -0.067 4.067 15 C -0.143 4.143 16 C -0.139 4.139 17 C -0.167 4.167 18 C 0.065 3.935 19 H 0.111 0.889 20 F -0.211 7.211 21 C -0.092 4.092 22 H 0.050 0.950 23 H 0.064 0.936 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.036 0.964 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.068 0.932 37 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -5.956 2.827 10.367 12.286 hybrid contribution 2.287 0.162 -0.918 2.470 sum -3.669 2.990 9.449 10.568 Atomic orbital electron populations 1.21577 0.96121 0.99858 1.00808 1.21415 0.94625 0.97658 1.00375 1.19204 0.91643 0.91737 0.86046 0.97889 1.21982 0.93974 1.37691 1.05764 0.93479 1.25580 1.01704 0.94908 0.95477 1.69984 1.36352 1.38462 1.09907 0.85844 0.81654 0.78052 0.77483 1.19749 1.20794 1.20409 1.61841 1.56309 1.00525 1.04202 1.21811 0.94450 0.99114 0.91307 1.22002 0.97896 0.98579 0.95858 1.21056 0.98397 0.92212 1.02192 1.21862 1.02135 0.99374 0.93298 1.20612 1.00744 0.74611 0.97549 0.88897 1.92763 1.95824 1.35447 1.97071 1.21264 0.97512 0.91112 0.99286 0.95028 0.93591 0.91984 0.92009 0.94773 0.92862 0.92884 0.96441 0.91865 0.91297 0.89967 0.91789 0.92010 0.89243 0.93231 0.95709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.84 9.79 71.98 0.70 -4.14 16 2 C -0.10 -4.72 5.16 30.59 0.16 -4.56 16 3 C 0.22 10.75 1.64 44.17 0.07 10.82 16 4 H 0.00 0.18 7.77 -2.38 -0.02 0.16 16 5 C -0.55 -29.65 7.13 25.60 0.18 -29.46 16 6 H 0.05 2.53 6.68 -2.91 -0.02 2.51 16 7 C 0.02 1.29 5.29 84.66 0.45 1.74 16 8 N -0.91 -51.31 11.30 21.45 0.24 -51.07 16 9 Si 0.94 43.42 29.54 68.60 2.03 45.45 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 13 N -0.51 -20.24 3.59 -890.88 -3.20 -23.44 16 14 C 0.06 2.30 3.68 87.15 0.32 2.62 16 15 C -0.11 -2.88 6.14 31.44 0.19 -2.69 16 16 C -0.10 -2.39 5.44 30.26 0.16 -2.22 16 17 C -0.13 -3.29 5.32 30.29 0.16 -3.13 16 18 C 0.10 3.17 3.58 28.92 0.10 3.27 16 19 H 0.09 2.72 7.59 -2.39 -0.02 2.70 16 20 F -0.23 -7.72 17.01 44.97 0.76 -6.95 16 21 C 0.04 1.45 4.11 83.94 0.34 1.80 16 22 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.06 2.20 7.72 -2.39 -0.02 2.18 16 25 H 0.06 3.26 5.97 -2.39 -0.01 3.25 16 26 H 0.03 1.54 6.43 -2.39 -0.02 1.52 16 27 H 0.26 14.20 8.31 -92.70 -0.77 13.43 16 28 H 0.05 2.21 5.51 -2.39 -0.01 2.19 16 29 H 0.02 0.67 6.18 -2.39 -0.01 0.66 16 30 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.06 1.60 7.39 -2.39 -0.02 1.58 16 34 H 0.06 1.69 7.15 -2.39 -0.02 1.67 16 35 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 36 H 0.05 2.12 7.57 -2.39 -0.02 2.10 16 37 H 0.02 1.03 7.09 -2.39 -0.02 1.02 16 Total: -1.00 -56.91 280.27 3.72 -53.19 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 1.03 Total: 8.78 kcal Atomic # 6 Polarization: -28.81 SS G_CDS: 2.85 Total: -25.96 kcal Atomic # 7 Polarization: -71.55 SS G_CDS: -2.96 Total: -74.51 kcal Atomic # 9 Polarization: -7.72 SS G_CDS: 0.76 Total: -6.95 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -56.91 3.72 -53.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166672.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.913 kcal (2) G-P(sol) polarization free energy of solvation -56.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds