Wall clock time and date at job start Sun Mar 29 2020 21:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47250 * 2 1 4 4 H 1.08991 * 109.47282 * 177.46814 * 3 2 1 5 5 C 1.50699 * 109.46834 * 297.47266 * 3 2 1 6 6 H 1.07996 * 120.00275 * 119.99715 * 5 3 2 7 7 C 1.37882 * 120.00012 * 299.99665 * 5 3 2 8 8 N 1.31509 * 119.99612 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99930 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47285 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46859 * 120.00022 * 9 7 5 12 12 H 1.48500 * 109.46883 * 239.99603 * 9 7 5 13 13 N 1.46899 * 109.46785 * 57.46752 * 3 2 1 14 14 C 1.44268 * 111.00296 * 59.88179 * 13 3 2 15 15 C 1.54064 * 111.98458 * 219.30777 * 14 13 3 16 16 C 1.54296 * 112.28858 * 318.90801 * 15 14 13 17 17 C 1.50461 * 113.03080 * 318.30558 * 16 15 14 18 18 C 1.54511 * 108.85445 * 92.15247 * 17 16 15 19 19 H 1.08996 * 109.05587 * 43.34860 * 18 17 16 20 20 F 1.39897 * 109.05687 * 162.25922 * 18 17 16 21 21 C 1.45861 * 111.59189 * 282.80667 * 18 17 16 22 22 H 1.08996 * 109.47221 * 55.24063 * 1 2 3 23 23 H 1.08999 * 109.47244 * 175.24734 * 1 2 3 24 24 H 1.09008 * 109.46816 * 295.24206 * 1 2 3 25 25 H 1.09001 * 109.47092 * 119.99385 * 2 1 3 26 26 H 1.08998 * 109.47263 * 239.99772 * 2 1 3 27 27 H 0.97008 * 120.00030 * 180.02562 * 8 7 5 28 28 H 1.09004 * 108.97407 * 339.94640 * 14 13 3 29 29 H 1.08994 * 108.98600 * 98.65558 * 14 13 3 30 30 H 1.09004 * 108.92338 * 198.18713 * 15 14 13 31 31 H 1.09000 * 108.85074 * 79.58354 * 15 14 13 32 32 H 1.08995 * 108.77548 * 197.38666 * 16 15 14 33 33 H 1.09001 * 108.76714 * 79.21761 * 16 15 14 34 34 H 1.08990 * 109.57806 * 332.33930 * 17 16 15 35 35 H 1.09002 * 109.67757 * 212.02155 * 17 16 15 36 36 H 1.09004 * 108.79277 * 300.44101 * 21 18 17 37 37 H 1.09000 * 108.79755 * 182.21585 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1290 1.4429 0.0454 5 6 1.5895 2.1346 -1.2606 6 1 0.9653 3.0138 -1.2004 7 6 1.9743 1.6452 -2.4909 8 7 2.7340 0.5743 -2.5642 9 14 1.4164 2.5035 -4.0534 10 1 0.5765 3.6763 -3.7012 11 1 2.6045 2.9582 -4.8196 12 1 0.6253 1.5583 -4.8818 13 7 1.5010 2.1524 1.1677 14 6 1.9107 1.5145 2.3951 15 6 0.7802 1.4978 3.4417 16 6 -0.0028 2.8269 3.4785 17 6 0.8861 4.0367 3.3782 18 6 1.0153 4.4395 1.8921 19 1 0.0339 4.3828 1.4214 20 9 1.4819 5.7561 1.8146 21 6 1.9376 3.5645 1.1771 22 1 -0.3633 0.5859 -0.8442 23 1 -0.3634 -1.0241 -0.0851 24 1 -0.3633 0.4383 0.9296 25 1 1.8933 -0.5137 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 3.0051 0.2302 -3.4297 28 1 2.2088 0.4885 2.1790 29 1 2.7658 2.0514 2.8055 30 1 1.2121 1.3148 4.4256 31 1 0.0909 0.6881 3.2026 32 1 -0.5618 2.8789 4.4127 33 1 -0.7092 2.8408 2.6485 34 1 1.8715 3.8002 3.7794 35 1 0.4498 4.8605 3.9431 36 1 2.9178 3.6258 1.6500 37 1 2.0247 3.9120 0.1476 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166673.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:25 Heat of formation + Delta-G solvation = -55.354877 kcal Electronic energy + Delta-G solvation = -17480.218047 eV Core-core repulsion = 14785.476689 eV Total energy + Delta-G solvation = -2694.741358 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -47.24369 -38.58375 -35.01162 -32.39527 -31.65993 -30.44666 -27.00627 -25.42209 -24.12098 -23.01489 -20.54890 -19.96639 -18.45873 -16.50398 -15.87484 -15.55240 -15.13919 -14.84983 -14.40431 -13.60097 -13.35478 -13.20486 -12.98350 -12.24060 -12.18239 -12.02893 -11.82747 -11.47512 -11.11407 -10.94026 -10.71283 -10.47664 -10.36363 -10.20253 -10.10341 -9.96853 -9.78063 -9.55615 -9.36717 -8.84047 -8.43137 -7.25938 -6.03908 -4.07647 3.28208 3.36809 3.41025 4.37935 4.64101 4.89407 5.09856 5.26950 5.37627 5.48103 5.58180 5.63590 5.72743 5.94842 5.99475 6.16626 6.27261 6.37181 6.41934 6.46390 6.51273 6.58676 6.60056 6.67420 6.78690 6.80229 7.13123 7.27739 7.38556 7.62735 7.74793 7.80894 8.09766 8.31244 8.57925 8.97444 9.56641 11.02341 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.026772 B = 0.010094 C = 0.008116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.617026 B = 2773.243759 C = 3449.233694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 C 0.217 3.783 4 H -0.002 1.002 5 C -0.499 4.499 6 H 0.063 0.937 7 C 0.061 3.939 8 N -0.891 5.891 9 Si 0.892 3.108 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.284 1.284 13 N -0.513 5.513 14 C 0.045 3.955 15 C -0.107 4.107 16 C -0.105 4.105 17 C -0.136 4.136 18 C 0.101 3.899 19 H 0.084 0.916 20 F -0.225 7.225 21 C 0.024 3.976 22 H 0.058 0.942 23 H 0.015 0.985 24 H 0.041 0.959 25 H 0.015 0.985 26 H 0.094 0.906 27 H 0.260 0.740 28 H 0.069 0.931 29 H 0.025 0.975 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.029 0.971 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.322 2.457 9.490 10.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.149 4.149 3 C 0.112 3.888 4 H 0.016 0.984 5 C -0.537 4.537 6 H 0.081 0.919 7 C -0.140 4.140 8 N -0.530 5.530 9 Si 0.720 3.280 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.210 1.210 13 N -0.237 5.237 14 C -0.084 4.084 15 C -0.145 4.145 16 C -0.143 4.143 17 C -0.174 4.174 18 C 0.064 3.936 19 H 0.102 0.898 20 F -0.206 7.206 21 C -0.105 4.105 22 H 0.077 0.923 23 H 0.034 0.966 24 H 0.060 0.940 25 H 0.034 0.966 26 H 0.112 0.888 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.043 0.957 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.047 0.953 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.740 2.343 9.300 10.294 hybrid contribution 0.710 0.436 -0.840 1.183 sum -3.030 2.780 8.460 9.407 Atomic orbital electron populations 1.21472 0.97233 0.97637 1.01499 1.21613 0.95241 0.97956 1.00138 1.19336 0.92449 0.90748 0.86284 0.98425 1.21088 1.31050 1.11927 0.89682 0.91894 1.24893 0.95123 0.95042 0.98982 1.69880 1.36077 1.22435 1.24602 0.86524 0.78432 0.79656 0.83351 1.19705 1.21182 1.21040 1.61489 1.59825 0.99952 1.02453 1.21993 0.95039 1.00008 0.91409 1.21951 0.98014 0.97128 0.97420 1.21030 0.98278 0.93653 1.01322 1.21895 1.01343 0.98562 0.95551 1.20584 0.99447 0.76889 0.96655 0.89813 1.92766 1.91155 1.39081 1.97588 1.21427 0.95135 0.91258 1.02662 0.92259 0.96597 0.93974 0.96625 0.88825 0.93018 0.91300 0.95693 0.93238 0.92068 0.93098 0.91108 0.91522 0.91655 0.95274 0.88375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.57 9.52 37.16 0.35 -2.21 16 2 C -0.11 -2.56 5.19 -26.73 -0.14 -2.70 16 3 C 0.22 5.20 1.66 -68.86 -0.11 5.09 16 4 H 0.00 -0.05 8.14 -51.93 -0.42 -0.47 16 5 C -0.50 -12.99 6.31 -34.44 -0.22 -13.21 16 6 H 0.06 1.66 6.87 -52.49 -0.36 1.30 16 7 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 8 N -0.89 -24.65 11.30 55.43 0.63 -24.03 16 9 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 10 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.51 -10.33 3.30 -232.94 -0.77 -11.10 16 14 C 0.04 0.79 4.88 -4.68 -0.02 0.77 16 15 C -0.11 -1.55 6.14 -25.50 -0.16 -1.71 16 16 C -0.11 -1.45 5.42 -27.32 -0.15 -1.60 16 17 C -0.14 -1.94 5.33 -27.21 -0.14 -2.09 16 18 C 0.10 1.71 3.57 -29.32 -0.10 1.61 16 19 H 0.08 1.43 7.59 -51.93 -0.39 1.04 16 20 F -0.22 -4.03 17.01 2.25 0.04 -3.99 16 21 C 0.02 0.46 4.35 -6.70 -0.03 0.43 16 22 H 0.06 1.37 7.14 -51.93 -0.37 1.00 16 23 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 24 H 0.04 0.83 7.44 -51.92 -0.39 0.45 16 25 H 0.02 0.33 6.11 -51.93 -0.32 0.01 16 26 H 0.09 2.43 6.01 -51.93 -0.31 2.12 16 27 H 0.26 6.90 8.31 -40.82 -0.34 6.57 16 28 H 0.07 1.27 5.39 -51.93 -0.28 0.99 16 29 H 0.02 0.43 6.51 -51.93 -0.34 0.09 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.90 7.88 -51.93 -0.41 0.49 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.07 7.38 -51.93 -0.38 0.68 16 34 H 0.07 0.96 7.15 -51.93 -0.37 0.59 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.03 0.56 7.24 -51.93 -0.38 0.19 16 37 H 0.10 2.16 5.93 -51.93 -0.31 1.85 16 LS Contribution 277.81 15.07 4.19 4.19 Total: -1.00 -26.46 277.81 -7.61 -34.07 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -5.86 Total: -1.01 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -0.82 Total: -14.09 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: -0.14 Total: -35.13 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.04 Total: -3.99 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -26.46 -7.61 -34.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166673.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.280 kcal (2) G-P(sol) polarization free energy of solvation -26.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds