Wall clock time and date at job start Sun Mar 29 2020 21:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47250 * 2 1 4 4 H 1.08991 * 109.47282 * 177.46814 * 3 2 1 5 5 C 1.50699 * 109.46834 * 297.47266 * 3 2 1 6 6 H 1.07996 * 120.00275 * 119.99715 * 5 3 2 7 7 C 1.37882 * 120.00012 * 299.99665 * 5 3 2 8 8 N 1.31509 * 119.99612 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99930 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47285 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46859 * 120.00022 * 9 7 5 12 12 H 1.48500 * 109.46883 * 239.99603 * 9 7 5 13 13 N 1.46899 * 109.46785 * 57.46752 * 3 2 1 14 14 C 1.44268 * 111.00296 * 59.88179 * 13 3 2 15 15 C 1.54064 * 111.98458 * 219.30777 * 14 13 3 16 16 C 1.54296 * 112.28858 * 318.90801 * 15 14 13 17 17 C 1.50461 * 113.03080 * 318.30558 * 16 15 14 18 18 C 1.54511 * 108.85445 * 92.15247 * 17 16 15 19 19 H 1.08996 * 109.05587 * 43.34860 * 18 17 16 20 20 F 1.39897 * 109.05687 * 162.25922 * 18 17 16 21 21 C 1.45861 * 111.59189 * 282.80667 * 18 17 16 22 22 H 1.08996 * 109.47221 * 55.24063 * 1 2 3 23 23 H 1.08999 * 109.47244 * 175.24734 * 1 2 3 24 24 H 1.09008 * 109.46816 * 295.24206 * 1 2 3 25 25 H 1.09001 * 109.47092 * 119.99385 * 2 1 3 26 26 H 1.08998 * 109.47263 * 239.99772 * 2 1 3 27 27 H 0.97008 * 120.00030 * 180.02562 * 8 7 5 28 28 H 1.09004 * 108.97407 * 339.94640 * 14 13 3 29 29 H 1.08994 * 108.98600 * 98.65558 * 14 13 3 30 30 H 1.09004 * 108.92338 * 198.18713 * 15 14 13 31 31 H 1.09000 * 108.85074 * 79.58354 * 15 14 13 32 32 H 1.08995 * 108.77548 * 197.38666 * 16 15 14 33 33 H 1.09001 * 108.76714 * 79.21761 * 16 15 14 34 34 H 1.08990 * 109.57806 * 332.33930 * 17 16 15 35 35 H 1.09002 * 109.67757 * 212.02155 * 17 16 15 36 36 H 1.09004 * 108.79277 * 300.44101 * 21 18 17 37 37 H 1.09000 * 108.79755 * 182.21585 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1290 1.4429 0.0454 5 6 1.5895 2.1346 -1.2606 6 1 0.9653 3.0138 -1.2004 7 6 1.9743 1.6452 -2.4909 8 7 2.7340 0.5743 -2.5642 9 14 1.4164 2.5035 -4.0534 10 1 0.5765 3.6763 -3.7012 11 1 2.6045 2.9582 -4.8196 12 1 0.6253 1.5583 -4.8818 13 7 1.5010 2.1524 1.1677 14 6 1.9107 1.5145 2.3951 15 6 0.7802 1.4978 3.4417 16 6 -0.0028 2.8269 3.4785 17 6 0.8861 4.0367 3.3782 18 6 1.0153 4.4395 1.8921 19 1 0.0339 4.3828 1.4214 20 9 1.4819 5.7561 1.8146 21 6 1.9376 3.5645 1.1771 22 1 -0.3633 0.5859 -0.8442 23 1 -0.3634 -1.0241 -0.0851 24 1 -0.3633 0.4383 0.9296 25 1 1.8933 -0.5137 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 3.0051 0.2302 -3.4297 28 1 2.2088 0.4885 2.1790 29 1 2.7658 2.0514 2.8055 30 1 1.2121 1.3148 4.4256 31 1 0.0909 0.6881 3.2026 32 1 -0.5618 2.8789 4.4127 33 1 -0.7092 2.8408 2.6485 34 1 1.8715 3.8002 3.7794 35 1 0.4498 4.8605 3.9431 36 1 2.9178 3.6258 1.6500 37 1 2.0247 3.9120 0.1476 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166673.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:24 Heat of formation + Delta-G solvation = -69.364497 kcal Electronic energy + Delta-G solvation = -17480.825550 eV Core-core repulsion = 14785.476689 eV Total energy + Delta-G solvation = -2695.348861 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.65672 -40.13212 -36.60827 -34.16576 -33.19594 -32.06334 -28.79942 -27.00566 -25.55069 -24.79322 -22.08753 -21.43140 -20.00123 -18.31909 -17.50948 -17.17528 -16.65252 -16.29631 -16.06124 -15.14074 -15.04812 -14.70636 -14.47818 -13.88090 -13.70092 -13.61214 -13.30672 -12.95861 -12.82130 -12.77168 -12.41305 -12.16780 -11.97341 -11.66822 -11.59722 -11.44609 -11.31690 -11.19834 -10.95935 -10.76520 -10.44552 -8.95933 -8.09527 -6.18740 1.39143 1.42555 1.52654 2.42082 3.08462 3.20991 3.59106 3.87184 4.07616 4.16442 4.23265 4.36267 4.43351 4.56557 4.63622 4.70291 4.74987 4.82055 4.93866 5.00758 5.08387 5.18525 5.26352 5.32856 5.34649 5.42781 5.47752 5.50274 5.58837 5.74222 5.80907 5.93279 6.30134 6.37190 6.79235 6.93409 7.48674 8.95933 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.026772 B = 0.010094 C = 0.008116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.617026 B = 2773.243759 C = 3449.233694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.106 4.106 3 C 0.223 3.777 4 H -0.044 1.044 5 C -0.503 4.503 6 H 0.055 0.945 7 C 0.016 3.984 8 N -0.917 5.917 9 Si 0.949 3.051 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.280 1.280 13 N -0.508 5.508 14 C 0.040 3.960 15 C -0.101 4.101 16 C -0.103 4.103 17 C -0.127 4.127 18 C 0.102 3.898 19 H 0.083 0.917 20 F -0.230 7.230 21 C 0.029 3.971 22 H 0.035 0.965 23 H 0.034 0.966 24 H 0.057 0.943 25 H 0.032 0.968 26 H 0.062 0.938 27 H 0.260 0.740 28 H 0.058 0.942 29 H 0.027 0.973 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.026 0.974 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.656 2.790 11.151 12.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.144 4.144 3 C 0.116 3.884 4 H -0.026 1.026 5 C -0.542 4.542 6 H 0.073 0.927 7 C -0.183 4.183 8 N -0.557 5.557 9 Si 0.775 3.225 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.206 1.206 13 N -0.232 5.232 14 C -0.089 4.089 15 C -0.139 4.139 16 C -0.141 4.141 17 C -0.164 4.164 18 C 0.065 3.935 19 H 0.101 0.899 20 F -0.211 7.211 21 C -0.100 4.100 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.076 0.924 25 H 0.050 0.950 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.045 0.955 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.044 0.956 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.082 2.684 10.979 12.392 hybrid contribution 1.187 0.344 -1.327 1.813 sum -3.895 3.028 9.652 10.840 Atomic orbital electron populations 1.21328 0.95500 0.98538 1.01184 1.21468 0.96628 0.96954 0.99392 1.19120 0.90005 0.91832 0.87394 1.02613 1.21277 1.30502 1.11610 0.90806 0.92664 1.25569 0.95377 0.95675 1.01671 1.70005 1.37089 1.23543 1.25081 0.85640 0.77946 0.78772 0.80115 1.19360 1.21138 1.20606 1.61503 1.59208 1.00050 1.02401 1.22128 0.96804 0.98975 0.90962 1.21917 0.96892 0.97813 0.97270 1.21034 0.97876 0.92716 1.02447 1.21854 1.01869 0.99629 0.93083 1.20588 0.98245 0.75948 0.98706 0.89900 1.92755 1.91218 1.39429 1.97747 1.21386 0.96007 0.91417 1.01171 0.94628 0.94689 0.92439 0.94994 0.91949 0.93091 0.92379 0.95475 0.90604 0.91929 0.89967 0.92431 0.91379 0.89431 0.95610 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.48 9.52 71.98 0.69 -3.80 16 2 C -0.11 -4.92 5.19 30.60 0.16 -4.76 16 3 C 0.22 10.95 1.66 44.17 0.07 11.02 16 4 H -0.04 -2.46 8.14 -2.39 -0.02 -2.48 16 5 C -0.50 -26.86 6.31 25.60 0.16 -26.69 16 6 H 0.06 2.98 6.87 -2.91 -0.02 2.96 16 7 C 0.02 0.86 5.30 84.66 0.45 1.31 16 8 N -0.92 -52.07 11.30 21.45 0.24 -51.82 16 9 Si 0.95 43.64 29.54 68.60 2.03 45.66 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 13 N -0.51 -20.37 3.30 -890.89 -2.94 -23.31 16 14 C 0.04 1.36 4.88 87.15 0.43 1.78 16 15 C -0.10 -2.59 6.14 31.39 0.19 -2.40 16 16 C -0.10 -2.46 5.42 30.21 0.16 -2.30 16 17 C -0.13 -3.22 5.33 30.29 0.16 -3.06 16 18 C 0.10 3.32 3.57 28.92 0.10 3.43 16 19 H 0.08 2.74 7.59 -2.39 -0.02 2.72 16 20 F -0.23 -8.00 17.01 44.97 0.76 -7.24 16 21 C 0.03 1.13 4.35 83.94 0.36 1.50 16 22 H 0.03 1.62 7.14 -2.39 -0.02 1.60 16 23 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.06 2.17 7.44 -2.38 -0.02 2.16 16 25 H 0.03 1.35 6.11 -2.39 -0.01 1.33 16 26 H 0.06 3.31 6.01 -2.39 -0.01 3.30 16 27 H 0.26 14.11 8.31 -92.70 -0.77 13.34 16 28 H 0.06 2.08 5.39 -2.38 -0.01 2.07 16 29 H 0.03 0.90 6.51 -2.39 -0.02 0.89 16 30 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 31 H 0.06 1.62 7.88 -2.39 -0.02 1.60 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 1.56 7.38 -2.39 -0.02 1.54 16 34 H 0.07 1.74 7.15 -2.39 -0.02 1.72 16 35 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.03 1.01 7.24 -2.38 -0.02 0.99 16 37 H 0.06 2.97 5.93 -2.39 -0.01 2.95 16 Total: -1.00 -57.53 277.81 4.07 -53.46 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 1.04 Total: 7.22 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: 2.94 Total: -23.97 kcal Atomic # 7 Polarization: -72.44 SS G_CDS: -2.69 Total: -75.13 kcal Atomic # 9 Polarization: -8.00 SS G_CDS: 0.76 Total: -7.24 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -57.53 4.07 -53.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166673.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.909 kcal (2) G-P(sol) polarization free energy of solvation -57.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds