Wall clock time and date at job start Sun Mar 29 2020 21:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47066 * 2 1 4 4 H 1.08997 * 109.46834 * 55.67852 * 3 2 1 5 5 C 1.50699 * 109.47083 * 175.67998 * 3 2 1 6 6 H 1.07998 * 120.00466 * 114.16417 * 5 3 2 7 7 C 1.37884 * 119.99961 * 294.16583 * 5 3 2 8 8 N 1.31506 * 120.00034 * 157.32964 * 7 5 3 9 9 Si 1.86799 * 119.99885 * 337.33176 * 7 5 3 10 10 H 1.48499 * 109.47125 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.47313 * 60.00056 * 9 7 5 12 12 H 1.48498 * 109.46902 * 300.00064 * 9 7 5 13 13 N 1.46896 * 109.47296 * 295.67969 * 3 2 1 14 14 C 1.47630 * 111.00207 * 295.57518 * 13 3 2 15 15 C 1.50817 * 108.05491 * 150.34739 * 14 13 3 16 16 C 1.53819 * 111.62183 * 95.05823 * 15 14 13 17 17 C 1.54168 * 111.97165 * 319.04112 * 16 15 14 18 18 C 1.50754 * 112.60990 * 318.49490 * 17 16 15 19 19 H 1.09004 * 109.54356 * 333.14510 * 18 17 16 20 20 F 1.39901 * 109.54610 * 212.88240 * 18 17 16 21 21 C 1.39778 * 111.00145 * 166.68136 * 13 3 2 22 22 H 1.09000 * 109.46542 * 299.99458 * 1 2 3 23 23 H 1.09000 * 109.47174 * 59.99608 * 1 2 3 24 24 H 1.08997 * 109.46972 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46542 * 240.00542 * 2 1 3 26 26 H 1.09000 * 109.47174 * 120.00392 * 2 1 3 27 27 H 0.97008 * 120.00304 * 354.95069 * 8 7 5 28 28 H 1.08997 * 109.74534 * 269.98483 * 14 13 3 29 29 H 1.09002 * 109.74533 * 30.70674 * 14 13 3 30 30 H 1.09004 * 109.04815 * 334.50766 * 15 14 13 31 31 H 1.08997 * 108.99110 * 215.57104 * 15 14 13 32 32 H 1.09007 * 108.98234 * 198.40316 * 16 15 14 33 33 H 1.08993 * 108.98434 * 79.68890 * 16 15 14 34 34 H 1.09000 * 108.85716 * 197.68608 * 17 16 15 35 35 H 1.09003 * 108.85218 * 79.29285 * 17 16 15 36 36 H 1.09004 * 109.02146 * 309.72312 * 21 13 3 37 37 H 1.09004 * 109.02041 * 68.53810 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6149 1.9781 0.8487 5 6 3.5432 1.4439 0.1070 6 1 4.1429 1.8056 -0.7151 7 6 4.1531 0.9831 1.2546 8 7 5.3984 0.5624 1.2140 9 14 3.2104 0.9566 2.8671 10 1 4.0834 0.4203 3.9421 11 1 2.0119 0.0913 2.7257 12 1 2.7864 2.3365 3.2153 13 7 1.6375 2.1042 -1.2481 14 6 2.2808 1.4689 -2.4152 15 6 1.3617 1.6289 -3.6002 16 6 1.7314 2.8623 -4.4417 17 6 2.1040 4.0712 -3.5605 18 6 1.1932 4.2224 -2.3688 19 1 0.2195 3.7884 -2.5965 20 9 1.0426 5.5794 -2.0638 21 6 1.8167 3.4878 -1.1620 22 1 -0.3632 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 5.8642 0.5070 0.3649 28 1 3.2342 1.9556 -2.6204 29 1 2.4427 0.4097 -2.2151 30 1 0.3370 1.7354 -3.2439 31 1 1.4302 0.7385 -4.2250 32 1 0.8820 3.1302 -5.0703 33 1 2.5790 2.6146 -5.0806 34 1 2.0481 4.9774 -4.1637 35 1 3.1279 3.9477 -3.2078 36 1 1.3505 3.8501 -0.2458 37 1 2.8841 3.7061 -1.1261 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166674.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:26 Heat of formation + Delta-G solvation = -61.162224 kcal Electronic energy + Delta-G solvation = -17445.404133 eV Core-core repulsion = 14750.410950 eV Total energy + Delta-G solvation = -2694.993183 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -47.29626 -38.88094 -35.18354 -32.46323 -31.83449 -30.77308 -27.34911 -24.93158 -24.70233 -22.38378 -20.85293 -19.67031 -19.04511 -17.39002 -16.22290 -15.49017 -15.15881 -14.83312 -14.38104 -13.86939 -13.59546 -13.18886 -13.06324 -12.69979 -12.40467 -12.14699 -11.77393 -11.62453 -11.45767 -11.05333 -10.87242 -10.56842 -10.44987 -10.37979 -10.08149 -9.97790 -9.83907 -9.67813 -9.52626 -9.02845 -8.32866 -7.35691 -6.40424 -4.12582 3.38115 3.42417 3.58731 4.46665 4.53840 4.89313 5.04344 5.06493 5.15294 5.31759 5.38390 5.49902 5.69020 5.91896 5.98683 6.00329 6.11690 6.13219 6.25366 6.27255 6.30378 6.35152 6.48037 6.54714 6.63868 6.75395 6.78975 6.84564 6.99991 7.19402 7.30547 7.85413 8.11826 8.32637 8.33847 8.87827 9.54907 10.85171 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.027568 B = 0.009402 C = 0.008938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.429155 B = 2977.257882 C = 3131.796102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C 0.196 3.804 4 H 0.029 0.971 5 C -0.635 4.635 6 H 0.058 0.942 7 C 0.042 3.958 8 N -0.897 5.897 9 Si 1.033 2.967 10 H -0.286 1.286 11 H -0.273 1.273 12 H -0.284 1.284 13 N -0.543 5.543 14 C 0.073 3.927 15 C -0.123 4.123 16 C -0.110 4.110 17 C -0.147 4.147 18 C 0.089 3.911 19 H 0.087 0.913 20 F -0.220 7.220 21 C 0.065 3.935 22 H 0.040 0.960 23 H 0.057 0.943 24 H 0.032 0.968 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.268 0.732 28 H 0.035 0.965 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.821 2.595 -7.750 12.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.155 4.155 3 C 0.090 3.910 4 H 0.047 0.953 5 C -0.673 4.673 6 H 0.076 0.924 7 C -0.165 4.165 8 N -0.529 5.529 9 Si 0.861 3.139 10 H -0.212 1.212 11 H -0.199 1.199 12 H -0.210 1.210 13 N -0.267 5.267 14 C -0.054 4.054 15 C -0.161 4.161 16 C -0.148 4.148 17 C -0.185 4.185 18 C 0.053 3.947 19 H 0.105 0.895 20 F -0.201 7.201 21 C -0.066 4.066 22 H 0.059 0.941 23 H 0.076 0.924 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.054 0.946 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -9.118 2.242 -6.186 11.244 hybrid contribution 0.860 0.612 -1.527 1.856 sum -8.258 2.854 -7.713 11.654 Atomic orbital electron populations 1.21748 0.97854 0.99194 1.01282 1.21947 0.93418 0.99052 1.01079 1.19544 0.94661 0.90396 0.86444 0.95340 1.22472 0.91528 1.48627 1.04636 0.92395 1.25654 0.96513 0.92050 1.02312 1.70844 1.12748 1.39440 1.29908 0.84187 0.75946 0.77230 0.76519 1.21174 1.19933 1.21017 1.59069 1.60354 1.02235 1.05021 1.21618 0.94510 1.00231 0.89064 1.21566 1.01353 0.96456 0.96723 1.21815 1.00860 0.94614 0.97504 1.22007 1.00719 0.99106 0.96662 1.21497 1.00890 0.76289 0.96071 0.89517 1.92765 1.97147 1.35431 1.94752 1.21178 0.99260 0.89965 0.96167 0.94120 0.92372 0.94916 0.92869 0.92484 0.92188 0.94643 0.90326 0.91007 0.92440 0.92501 0.92180 0.91517 0.91141 0.91118 0.94676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.80 37.16 0.36 -2.17 16 2 C -0.12 -2.45 5.05 -26.73 -0.13 -2.59 16 3 C 0.20 4.45 1.25 -68.87 -0.09 4.36 16 4 H 0.03 0.68 6.33 -51.93 -0.33 0.35 16 5 C -0.63 -16.87 7.53 -34.44 -0.26 -17.13 16 6 H 0.06 1.68 6.80 -52.49 -0.36 1.32 16 7 C 0.04 1.17 5.23 -17.82 -0.09 1.07 16 8 N -0.90 -26.81 13.69 55.43 0.76 -26.05 16 9 Si 1.03 24.64 26.45 -169.99 -4.50 20.15 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.04 6.07 56.52 0.34 -5.70 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.54 -10.66 3.30 -233.39 -0.77 -11.43 16 14 C 0.07 1.34 4.07 -4.52 -0.02 1.32 16 15 C -0.12 -1.78 5.41 -27.40 -0.15 -1.93 16 16 C -0.11 -1.43 5.91 -25.69 -0.15 -1.58 16 17 C -0.15 -2.15 5.10 -27.25 -0.14 -2.29 16 18 C 0.09 1.44 3.60 -27.11 -0.10 1.35 16 19 H 0.09 1.32 7.11 -51.93 -0.37 0.95 16 20 F -0.22 -3.80 17.02 2.25 0.04 -3.76 16 21 C 0.07 1.26 4.46 -6.75 -0.03 1.23 16 22 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 23 H 0.06 0.99 7.73 -51.93 -0.40 0.59 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 1.11 6.05 -51.93 -0.31 0.80 16 26 H 0.06 1.28 5.41 -51.93 -0.28 1.00 16 27 H 0.27 8.01 8.73 -40.82 -0.36 7.65 16 28 H 0.04 0.71 6.03 -51.93 -0.31 0.39 16 29 H 0.08 1.55 5.67 -51.93 -0.29 1.26 16 30 H 0.07 1.05 7.26 -51.93 -0.38 0.67 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.89 8.04 -51.93 -0.42 0.47 16 35 H 0.07 1.14 6.58 -51.93 -0.34 0.80 16 36 H 0.07 1.40 7.76 -51.93 -0.40 0.99 16 37 H 0.04 0.77 6.91 -51.93 -0.36 0.41 16 LS Contribution 275.26 15.07 4.15 4.15 Total: -1.00 -27.79 275.26 -7.00 -34.78 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -5.88 Total: 0.51 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: -0.79 Total: -18.36 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: -0.01 Total: -37.47 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.04 Total: -3.76 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -4.50 Total: 20.15 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -27.79 -7.00 -34.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166674.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.380 kcal (2) G-P(sol) polarization free energy of solvation -27.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds