Wall clock time and date at job start Sun Mar 29 2020 21:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47066 * 2 1 4 4 H 1.08997 * 109.46834 * 55.67852 * 3 2 1 5 5 C 1.50699 * 109.47083 * 175.67998 * 3 2 1 6 6 H 1.07998 * 120.00466 * 114.16417 * 5 3 2 7 7 C 1.37884 * 119.99961 * 294.16583 * 5 3 2 8 8 N 1.31506 * 120.00034 * 157.32964 * 7 5 3 9 9 Si 1.86799 * 119.99885 * 337.33176 * 7 5 3 10 10 H 1.48499 * 109.47125 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.47313 * 60.00056 * 9 7 5 12 12 H 1.48498 * 109.46902 * 300.00064 * 9 7 5 13 13 N 1.46896 * 109.47296 * 295.67969 * 3 2 1 14 14 C 1.47630 * 111.00207 * 295.57518 * 13 3 2 15 15 C 1.50817 * 108.05491 * 150.34739 * 14 13 3 16 16 C 1.53819 * 111.62183 * 95.05823 * 15 14 13 17 17 C 1.54168 * 111.97165 * 319.04112 * 16 15 14 18 18 C 1.50754 * 112.60990 * 318.49490 * 17 16 15 19 19 H 1.09004 * 109.54356 * 333.14510 * 18 17 16 20 20 F 1.39901 * 109.54610 * 212.88240 * 18 17 16 21 21 C 1.39778 * 111.00145 * 166.68136 * 13 3 2 22 22 H 1.09000 * 109.46542 * 299.99458 * 1 2 3 23 23 H 1.09000 * 109.47174 * 59.99608 * 1 2 3 24 24 H 1.08997 * 109.46972 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46542 * 240.00542 * 2 1 3 26 26 H 1.09000 * 109.47174 * 120.00392 * 2 1 3 27 27 H 0.97008 * 120.00304 * 354.95069 * 8 7 5 28 28 H 1.08997 * 109.74534 * 269.98483 * 14 13 3 29 29 H 1.09002 * 109.74533 * 30.70674 * 14 13 3 30 30 H 1.09004 * 109.04815 * 334.50766 * 15 14 13 31 31 H 1.08997 * 108.99110 * 215.57104 * 15 14 13 32 32 H 1.09007 * 108.98234 * 198.40316 * 16 15 14 33 33 H 1.08993 * 108.98434 * 79.68890 * 16 15 14 34 34 H 1.09000 * 108.85716 * 197.68608 * 17 16 15 35 35 H 1.09003 * 108.85218 * 79.29285 * 17 16 15 36 36 H 1.09004 * 109.02146 * 309.72312 * 21 13 3 37 37 H 1.09004 * 109.02041 * 68.53810 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6149 1.9781 0.8487 5 6 3.5432 1.4439 0.1070 6 1 4.1429 1.8056 -0.7151 7 6 4.1531 0.9831 1.2546 8 7 5.3984 0.5624 1.2140 9 14 3.2104 0.9566 2.8671 10 1 4.0834 0.4203 3.9421 11 1 2.0119 0.0913 2.7257 12 1 2.7864 2.3365 3.2153 13 7 1.6375 2.1042 -1.2481 14 6 2.2808 1.4689 -2.4152 15 6 1.3617 1.6289 -3.6002 16 6 1.7314 2.8623 -4.4417 17 6 2.1040 4.0712 -3.5605 18 6 1.1932 4.2224 -2.3688 19 1 0.2195 3.7884 -2.5965 20 9 1.0426 5.5794 -2.0638 21 6 1.8167 3.4878 -1.1620 22 1 -0.3632 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 5.8642 0.5070 0.3649 28 1 3.2342 1.9556 -2.6204 29 1 2.4427 0.4097 -2.2151 30 1 0.3370 1.7354 -3.2439 31 1 1.4302 0.7385 -4.2250 32 1 0.8820 3.1302 -5.0703 33 1 2.5790 2.6146 -5.0806 34 1 2.0481 4.9774 -4.1637 35 1 3.1279 3.9477 -3.2078 36 1 1.3505 3.8501 -0.2458 37 1 2.8841 3.7061 -1.1261 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166674.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:26 Heat of formation + Delta-G solvation = -77.808859 kcal Electronic energy + Delta-G solvation = -17446.125985 eV Core-core repulsion = 14750.410950 eV Total energy + Delta-G solvation = -2695.715036 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.66364 -40.43807 -36.70240 -34.39978 -33.44744 -32.16429 -29.09067 -26.41573 -26.16549 -24.13335 -22.35567 -21.23916 -20.59864 -19.34023 -17.71198 -16.92297 -16.64803 -16.32531 -15.84205 -15.51325 -15.22425 -14.63445 -14.55905 -14.37689 -13.95097 -13.84967 -13.42516 -12.98421 -12.80888 -12.61582 -12.40773 -12.24046 -12.08987 -11.81001 -11.58409 -11.53923 -11.33913 -11.15419 -11.13967 -10.92864 -10.47354 -9.24074 -8.52210 -6.35608 1.44967 1.49846 1.68671 2.46818 3.00128 3.03551 3.58192 3.73401 3.78449 4.00975 4.13808 4.25001 4.37155 4.39214 4.53504 4.65980 4.70729 4.77457 4.82646 4.85467 4.96243 4.98367 5.05893 5.19571 5.26384 5.27965 5.35146 5.38295 5.49210 5.51936 5.68617 5.96300 6.00898 6.20471 6.65055 6.74137 7.39419 8.59778 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.027568 B = 0.009402 C = 0.008938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.429155 B = 2977.257882 C = 3131.796102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.114 4.114 3 C 0.195 3.805 4 H 0.026 0.974 5 C -0.626 4.626 6 H 0.019 0.981 7 C -0.009 4.009 8 N -0.932 5.932 9 Si 1.071 2.929 10 H -0.291 1.291 11 H -0.241 1.241 12 H -0.272 1.272 13 N -0.528 5.528 14 C 0.076 3.924 15 C -0.116 4.116 16 C -0.104 4.104 17 C -0.146 4.146 18 C 0.100 3.900 19 H 0.110 0.890 20 F -0.225 7.225 21 C 0.064 3.936 22 H 0.045 0.955 23 H 0.066 0.934 24 H 0.054 0.946 25 H 0.048 0.952 26 H 0.041 0.959 27 H 0.252 0.748 28 H 0.008 0.992 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.042 0.958 36 H 0.064 0.936 37 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.882 2.583 -8.667 14.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.152 4.152 3 C 0.087 3.913 4 H 0.044 0.956 5 C -0.664 4.664 6 H 0.037 0.963 7 C -0.209 4.209 8 N -0.567 5.567 9 Si 0.892 3.108 10 H -0.217 1.217 11 H -0.165 1.165 12 H -0.197 1.197 13 N -0.251 5.251 14 C -0.051 4.051 15 C -0.153 4.153 16 C -0.142 4.142 17 C -0.184 4.184 18 C 0.063 3.937 19 H 0.128 0.872 20 F -0.206 7.206 21 C -0.067 4.067 22 H 0.064 0.936 23 H 0.086 0.914 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.026 0.974 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges -12.199 2.238 -7.135 14.309 hybrid contribution 1.895 0.667 -1.303 2.395 sum -10.304 2.905 -8.438 13.632 Atomic orbital electron populations 1.21652 0.94520 1.00960 1.01982 1.21819 0.96296 0.96958 1.00155 1.19497 0.91659 0.92144 0.87974 0.95647 1.22656 0.93904 1.46853 1.03019 0.96318 1.26970 0.96553 0.91579 1.05802 1.70968 1.14186 1.42647 1.28915 0.83722 0.75962 0.78483 0.72592 1.21734 1.16450 1.19702 1.59191 1.59524 1.02189 1.04193 1.21644 0.94576 0.98575 0.90323 1.21486 1.00329 0.98326 0.95194 1.21806 1.02472 0.92832 0.97090 1.22001 0.98778 1.01076 0.96537 1.21427 1.01924 0.75599 0.94701 0.87177 1.92762 1.97187 1.35823 1.94794 1.21216 0.97280 0.90208 0.97978 0.93636 0.91450 0.92648 0.93338 0.94045 0.93909 0.97359 0.92049 0.90125 0.90425 0.89389 0.91415 0.89630 0.93869 0.91743 0.98476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.27 9.80 71.98 0.71 -3.56 16 2 C -0.11 -4.64 5.05 30.60 0.15 -4.48 16 3 C 0.20 8.80 1.25 44.17 0.06 8.85 16 4 H 0.03 1.19 6.33 -2.39 -0.02 1.17 16 5 C -0.63 -34.54 7.53 25.60 0.19 -34.35 16 6 H 0.02 1.15 6.80 -2.91 -0.02 1.13 16 7 C -0.01 -0.52 5.23 84.66 0.44 -0.07 16 8 N -0.93 -58.09 13.69 21.45 0.29 -57.79 16 9 Si 1.07 49.69 26.45 68.60 1.81 51.50 16 10 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 11 H -0.24 -9.86 6.07 99.48 0.60 -9.26 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 13 N -0.53 -20.44 3.30 -892.32 -2.94 -23.38 16 14 C 0.08 2.77 4.07 85.45 0.35 3.12 16 15 C -0.12 -3.01 5.41 30.16 0.16 -2.84 16 16 C -0.10 -2.37 5.91 31.27 0.18 -2.18 16 17 C -0.15 -4.01 5.10 30.26 0.15 -3.86 16 18 C 0.10 3.05 3.60 30.35 0.11 3.16 16 19 H 0.11 2.93 7.11 -2.39 -0.02 2.92 16 20 F -0.22 -7.35 17.02 44.97 0.77 -6.59 16 21 C 0.06 2.49 4.46 88.07 0.39 2.88 16 22 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.07 2.03 7.73 -2.39 -0.02 2.01 16 24 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.05 1.99 6.05 -2.39 -0.01 1.98 16 26 H 0.04 1.80 5.41 -2.39 -0.01 1.78 16 27 H 0.25 15.99 8.73 -92.70 -0.81 15.18 16 28 H 0.01 0.34 6.03 -2.39 -0.01 0.32 16 29 H 0.06 2.44 5.67 -2.39 -0.01 2.43 16 30 H 0.08 2.01 7.26 -2.38 -0.02 1.99 16 31 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.09 2.05 8.04 -2.39 -0.02 2.03 16 35 H 0.04 1.41 6.58 -2.39 -0.02 1.40 16 36 H 0.06 2.54 7.76 -2.39 -0.02 2.52 16 37 H 0.00 -0.13 6.91 -2.39 -0.02 -0.15 16 Total: -1.00 -62.58 275.26 3.73 -58.85 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 0.90 Total: 10.75 kcal Atomic # 6 Polarization: -36.25 SS G_CDS: 2.90 Total: -33.34 kcal Atomic # 7 Polarization: -78.52 SS G_CDS: -2.65 Total: -81.17 kcal Atomic # 9 Polarization: -7.35 SS G_CDS: 0.77 Total: -6.59 kcal Atomic # 14 Polarization: 49.69 SS G_CDS: 1.81 Total: 51.50 kcal Total: -62.58 3.73 -58.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166674.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.958 kcal (2) G-P(sol) polarization free energy of solvation -62.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds