Wall clock time and date at job start Sun Mar 29 2020 21:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53008 * 109.47413 * 2 1 4 4 H 1.08996 * 109.46852 * 302.84824 * 3 2 1 5 5 C 1.50695 * 109.47202 * 182.84406 * 3 2 1 6 6 H 1.08001 * 119.99845 * 239.71747 * 5 3 2 7 7 C 1.37874 * 120.00183 * 60.00094 * 5 3 2 8 8 N 1.31516 * 120.00087 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00100 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47044 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47290 * 120.00407 * 9 7 5 12 12 H 1.48506 * 109.47343 * 240.00318 * 9 7 5 13 13 N 1.46906 * 109.46943 * 62.84356 * 3 2 1 14 14 C 1.39772 * 110.99748 * 67.00415 * 13 3 2 15 15 C 1.54433 * 111.76923 * 189.12550 * 14 13 3 16 16 C 1.50750 * 109.02674 * 282.59763 * 15 14 13 17 17 C 1.54169 * 112.61686 * 93.01655 * 16 15 14 18 18 C 1.53822 * 111.96520 * 318.48700 * 17 16 15 19 19 H 1.09001 * 109.05439 * 198.55955 * 18 17 16 20 20 F 1.39907 * 109.05088 * 79.59320 * 18 17 16 21 21 C 1.47629 * 110.99714 * 195.90121 * 13 3 2 22 22 H 1.09002 * 109.47397 * 184.77800 * 1 2 3 23 23 H 1.09002 * 109.47185 * 304.78134 * 1 2 3 24 24 H 1.08999 * 109.47462 * 64.78165 * 1 2 3 25 25 H 1.09003 * 109.47642 * 240.00379 * 2 1 3 26 26 H 1.09001 * 109.47627 * 120.00066 * 2 1 3 27 27 H 0.96998 * 120.00500 * 179.97438 * 8 7 5 28 28 H 1.08997 * 109.02727 * 309.71684 * 14 13 3 29 29 H 1.09001 * 109.01747 * 68.54068 * 14 13 3 30 30 H 1.09002 * 109.54505 * 42.45505 * 15 14 13 31 31 H 1.08995 * 109.54698 * 162.63401 * 15 14 13 32 32 H 1.09001 * 108.85046 * 213.82237 * 16 15 14 33 33 H 1.09000 * 108.85659 * 332.20214 * 16 15 14 34 34 H 1.08998 * 108.98154 * 79.12187 * 17 16 15 35 35 H 1.08994 * 108.98511 * 197.85130 * 17 16 15 36 36 H 1.09002 * 109.73938 * 269.98184 * 21 13 3 37 37 H 1.08995 * 109.75114 * 30.70777 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6356 1.9709 -0.8633 5 6 3.5453 1.4431 -0.0705 6 1 4.1227 1.9015 0.7188 7 6 4.1853 0.8635 -1.1454 8 7 3.4821 0.3106 -2.1095 9 14 6.0512 0.8648 -1.2331 10 1 6.6026 1.5458 -0.0342 11 1 6.5456 -0.5347 -1.2793 12 1 6.4889 1.5850 -2.4559 13 7 1.6072 2.1149 1.2324 14 6 2.2340 1.5606 2.3520 15 6 1.6299 2.0940 3.6693 16 6 2.1601 3.4816 3.9267 17 6 1.2369 4.5823 3.3672 18 6 0.6859 4.2197 1.9776 19 1 0.3272 5.1259 1.4895 20 9 -0.3825 3.3291 2.1282 21 6 1.7414 3.5801 1.1107 22 1 -0.3634 -1.0241 0.0856 23 1 -0.3634 0.5862 0.8441 24 1 -0.3634 0.4378 -0.9297 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.9323 -0.0968 -2.8659 28 1 2.1207 0.4769 2.3224 29 1 3.2955 1.8063 2.3228 30 1 0.5437 2.1287 3.5847 31 1 1.9107 1.4364 4.4919 32 1 2.2665 3.6241 5.0021 33 1 3.1417 3.5754 3.4623 34 1 0.4021 4.7272 4.0528 35 1 1.7992 5.5131 3.2937 36 1 2.7311 3.8884 1.4476 37 1 1.5956 3.8783 0.0725 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166675.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:28 Heat of formation + Delta-G solvation = -50.452016 kcal Electronic energy + Delta-G solvation = -17644.472474 eV Core-core repulsion = 14949.943720 eV Total energy + Delta-G solvation = -2694.528754 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -46.90916 -38.42517 -34.93547 -32.29832 -31.26537 -30.88764 -27.02113 -24.91859 -24.58195 -22.72435 -20.53328 -19.27975 -18.98271 -16.55306 -15.90105 -15.19899 -15.01576 -14.84159 -14.31816 -13.69067 -13.03104 -12.90411 -12.79661 -12.58829 -12.18720 -11.76885 -11.52515 -11.39399 -11.16970 -10.86415 -10.83200 -10.55620 -10.43465 -10.22273 -9.94022 -9.82469 -9.65525 -9.51837 -9.22639 -8.98668 -8.35392 -6.94855 -5.96909 -4.11242 3.25124 3.34029 3.36860 4.39471 4.90193 4.93410 5.04571 5.24460 5.30145 5.47185 5.56771 5.59844 5.87626 5.97363 6.11178 6.23740 6.32428 6.42710 6.46279 6.52779 6.57889 6.59010 6.70435 6.77979 6.85466 7.04221 7.23022 7.27469 7.46414 7.66088 7.82658 8.08529 8.21523 8.37515 8.71397 9.01322 9.56704 11.01310 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.028889 B = 0.009818 C = 0.008484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.985271 B = 2851.221280 C = 3299.571788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.110 4.110 3 C 0.221 3.779 4 H 0.036 0.964 5 C -0.543 4.543 6 H 0.057 0.943 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.539 5.539 14 C 0.084 3.916 15 C -0.134 4.134 16 C -0.115 4.115 17 C -0.142 4.142 18 C 0.100 3.900 19 H 0.067 0.933 20 F -0.199 7.199 21 C 0.046 3.954 22 H 0.023 0.977 23 H 0.055 0.945 24 H 0.036 0.964 25 H 0.090 0.910 26 H 0.032 0.968 27 H 0.260 0.740 28 H 0.069 0.931 29 H 0.023 0.977 30 H 0.080 0.920 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.046 0.954 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.636 5.776 8.212 10.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.148 4.148 3 C 0.115 3.885 4 H 0.054 0.946 5 C -0.582 4.582 6 H 0.075 0.925 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.262 5.262 14 C -0.046 4.046 15 C -0.172 4.172 16 C -0.153 4.153 17 C -0.180 4.180 18 C 0.063 3.937 19 H 0.085 0.915 20 F -0.180 7.180 21 C -0.083 4.083 22 H 0.042 0.958 23 H 0.074 0.926 24 H 0.055 0.945 25 H 0.109 0.891 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.041 0.959 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.097 5.570 8.108 10.656 hybrid contribution 1.975 0.119 -0.211 1.990 sum -2.122 5.690 7.897 9.962 Atomic orbital electron populations 1.21722 0.98744 0.98439 1.00821 1.21603 0.92357 0.99102 1.01782 1.19282 0.92493 0.91072 0.85635 0.94569 1.21810 0.92830 1.37297 1.06286 0.92516 1.24909 0.97848 0.95105 0.95560 1.69890 1.34812 1.37861 1.09768 0.86638 0.86358 0.77724 0.77846 1.20009 1.21007 1.21084 1.59018 1.60696 1.01551 1.04950 1.20794 0.95335 0.99400 0.89043 1.21723 1.02690 0.94960 0.97824 1.21365 0.99132 0.95201 0.99590 1.22520 1.00024 0.98991 0.96485 1.21416 0.85853 0.90512 0.95921 0.91548 1.92769 1.57569 1.71048 1.96633 1.22127 0.96383 0.90593 0.99162 0.95806 0.92638 0.94497 0.89146 0.94904 0.92976 0.91322 0.95945 0.90111 0.92718 0.92959 0.92210 0.91620 0.91323 0.93535 0.90686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.84 37.15 0.37 -2.59 16 2 C -0.11 -2.64 5.10 -26.73 -0.14 -2.78 16 3 C 0.22 5.41 1.67 -68.86 -0.12 5.30 16 4 H 0.04 0.99 7.64 -51.93 -0.40 0.59 16 5 C -0.54 -14.37 7.60 -34.44 -0.26 -14.63 16 6 H 0.06 1.52 6.19 -52.49 -0.32 1.19 16 7 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 8 N -0.88 -24.78 11.30 55.43 0.63 -24.15 16 9 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 13 N -0.54 -11.32 2.49 -233.38 -0.58 -11.90 16 14 C 0.08 1.68 4.30 -6.75 -0.03 1.65 16 15 C -0.13 -2.20 5.61 -27.11 -0.15 -2.36 16 16 C -0.12 -1.67 5.31 -27.25 -0.14 -1.82 16 17 C -0.14 -1.91 5.70 -25.69 -0.15 -2.05 16 18 C 0.10 1.57 3.95 -27.40 -0.11 1.47 16 19 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 20 F -0.20 -3.65 14.11 2.25 0.03 -3.62 16 21 C 0.05 0.86 4.97 -4.52 -0.02 0.84 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.05 1.17 7.55 -51.93 -0.39 0.77 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.09 2.41 6.00 -51.93 -0.31 2.10 16 26 H 0.03 0.78 6.26 -51.93 -0.32 0.45 16 27 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.07 1.46 5.89 -51.93 -0.31 1.15 16 29 H 0.02 0.49 5.67 -51.93 -0.29 0.20 16 30 H 0.08 1.41 6.00 -51.93 -0.31 1.09 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.93 6.58 -51.93 -0.34 0.59 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.87 6.66 -51.93 -0.35 0.53 16 37 H 0.07 1.46 7.51 -51.93 -0.39 1.07 16 LS Contribution 275.38 15.07 4.15 4.15 Total: -1.00 -27.43 275.38 -7.47 -34.90 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -5.83 Total: -0.16 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -0.85 Total: -15.23 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.04 Total: -36.06 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.03 Total: -3.62 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -27.43 -7.47 -34.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166675.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.547 kcal (2) G-P(sol) polarization free energy of solvation -27.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds