Wall clock time and date at job start Sun Mar 29 2020 21:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53008 * 109.47413 * 2 1 4 4 H 1.08996 * 109.46852 * 302.84824 * 3 2 1 5 5 C 1.50695 * 109.47202 * 182.84406 * 3 2 1 6 6 H 1.08001 * 119.99845 * 239.71747 * 5 3 2 7 7 C 1.37874 * 120.00183 * 60.00094 * 5 3 2 8 8 N 1.31516 * 120.00087 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00100 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47044 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47290 * 120.00407 * 9 7 5 12 12 H 1.48506 * 109.47343 * 240.00318 * 9 7 5 13 13 N 1.46906 * 109.46943 * 62.84356 * 3 2 1 14 14 C 1.39772 * 110.99748 * 67.00415 * 13 3 2 15 15 C 1.54433 * 111.76923 * 189.12550 * 14 13 3 16 16 C 1.50750 * 109.02674 * 282.59763 * 15 14 13 17 17 C 1.54169 * 112.61686 * 93.01655 * 16 15 14 18 18 C 1.53822 * 111.96520 * 318.48700 * 17 16 15 19 19 H 1.09001 * 109.05439 * 198.55955 * 18 17 16 20 20 F 1.39907 * 109.05088 * 79.59320 * 18 17 16 21 21 C 1.47629 * 110.99714 * 195.90121 * 13 3 2 22 22 H 1.09002 * 109.47397 * 184.77800 * 1 2 3 23 23 H 1.09002 * 109.47185 * 304.78134 * 1 2 3 24 24 H 1.08999 * 109.47462 * 64.78165 * 1 2 3 25 25 H 1.09003 * 109.47642 * 240.00379 * 2 1 3 26 26 H 1.09001 * 109.47627 * 120.00066 * 2 1 3 27 27 H 0.96998 * 120.00500 * 179.97438 * 8 7 5 28 28 H 1.08997 * 109.02727 * 309.71684 * 14 13 3 29 29 H 1.09001 * 109.01747 * 68.54068 * 14 13 3 30 30 H 1.09002 * 109.54505 * 42.45505 * 15 14 13 31 31 H 1.08995 * 109.54698 * 162.63401 * 15 14 13 32 32 H 1.09001 * 108.85046 * 213.82237 * 16 15 14 33 33 H 1.09000 * 108.85659 * 332.20214 * 16 15 14 34 34 H 1.08998 * 108.98154 * 79.12187 * 17 16 15 35 35 H 1.08994 * 108.98511 * 197.85130 * 17 16 15 36 36 H 1.09002 * 109.73938 * 269.98184 * 21 13 3 37 37 H 1.08995 * 109.75114 * 30.70777 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6356 1.9709 -0.8633 5 6 3.5453 1.4431 -0.0705 6 1 4.1227 1.9015 0.7188 7 6 4.1853 0.8635 -1.1454 8 7 3.4821 0.3106 -2.1095 9 14 6.0512 0.8648 -1.2331 10 1 6.6026 1.5458 -0.0342 11 1 6.5456 -0.5347 -1.2793 12 1 6.4889 1.5850 -2.4559 13 7 1.6072 2.1149 1.2324 14 6 2.2340 1.5606 2.3520 15 6 1.6299 2.0940 3.6693 16 6 2.1601 3.4816 3.9267 17 6 1.2369 4.5823 3.3672 18 6 0.6859 4.2197 1.9776 19 1 0.3272 5.1259 1.4895 20 9 -0.3825 3.3291 2.1282 21 6 1.7414 3.5801 1.1107 22 1 -0.3634 -1.0241 0.0856 23 1 -0.3634 0.5862 0.8441 24 1 -0.3634 0.4378 -0.9297 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.9323 -0.0968 -2.8659 28 1 2.1207 0.4769 2.3224 29 1 3.2955 1.8063 2.3228 30 1 0.5437 2.1287 3.5847 31 1 1.9107 1.4364 4.4919 32 1 2.2665 3.6241 5.0021 33 1 3.1417 3.5754 3.4623 34 1 0.4021 4.7272 4.0528 35 1 1.7992 5.5131 3.2937 36 1 2.7311 3.8884 1.4476 37 1 1.5956 3.8783 0.0725 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166675.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:28 Heat of formation + Delta-G solvation = -64.888708 kcal Electronic energy + Delta-G solvation = -17645.098496 eV Core-core repulsion = 14949.943720 eV Total energy + Delta-G solvation = -2695.154776 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.25901 -40.05066 -36.50999 -34.16942 -32.81959 -32.49985 -28.87061 -26.52534 -26.01745 -24.54562 -22.13653 -20.81830 -20.52654 -18.39342 -17.55811 -16.67083 -16.59972 -16.43436 -15.91966 -15.24489 -14.80513 -14.32406 -14.26687 -14.13106 -13.81815 -13.36001 -13.14674 -13.12636 -12.88411 -12.72279 -12.38204 -12.15788 -12.08086 -11.76024 -11.62395 -11.44734 -11.21967 -11.12007 -10.89831 -10.76283 -10.43655 -8.75378 -8.00477 -6.25762 1.35013 1.38211 1.47518 2.39386 3.14803 3.37882 3.75346 3.84733 4.08068 4.18069 4.22606 4.33581 4.47330 4.61727 4.71624 4.77297 4.85195 4.87196 4.93758 4.99424 5.12342 5.18031 5.24989 5.26406 5.38184 5.43969 5.44453 5.54360 5.60287 5.68550 5.81932 6.11001 6.24756 6.42327 6.90813 7.06577 7.45931 8.92278 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.028889 B = 0.009818 C = 0.008484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.985271 B = 2851.221280 C = 3299.571788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.105 4.105 3 C 0.226 3.774 4 H 0.003 0.997 5 C -0.550 4.550 6 H 0.050 0.950 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.947 3.053 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.281 1.281 13 N -0.537 5.537 14 C 0.087 3.913 15 C -0.124 4.124 16 C -0.116 4.116 17 C -0.136 4.136 18 C 0.098 3.902 19 H 0.094 0.906 20 F -0.214 7.214 21 C 0.044 3.956 22 H 0.044 0.956 23 H 0.057 0.943 24 H 0.031 0.969 25 H 0.061 0.939 26 H 0.029 0.971 27 H 0.261 0.739 28 H 0.050 0.950 29 H 0.001 0.999 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.045 0.955 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.045 0.955 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.690 6.856 9.870 12.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.143 4.143 3 C 0.120 3.880 4 H 0.021 0.979 5 C -0.590 4.590 6 H 0.068 0.932 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.773 3.227 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.207 1.207 13 N -0.260 5.260 14 C -0.043 4.043 15 C -0.162 4.162 16 C -0.154 4.154 17 C -0.174 4.174 18 C 0.061 3.939 19 H 0.112 0.888 20 F -0.195 7.195 21 C -0.085 4.085 22 H 0.063 0.937 23 H 0.076 0.924 24 H 0.050 0.950 25 H 0.080 0.920 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.019 0.981 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.063 0.937 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.156 6.663 9.782 12.544 hybrid contribution 1.991 -0.217 -0.741 2.135 sum -2.165 6.447 9.041 11.313 Atomic orbital electron populations 1.21564 0.96414 0.99778 1.00578 1.21449 0.94373 0.98407 1.00094 1.19048 0.91441 0.91317 0.86239 0.97939 1.22018 0.93988 1.36935 1.06018 0.93176 1.25615 1.01902 0.94968 0.95377 1.70014 1.36321 1.38504 1.10211 0.85684 0.81486 0.77678 0.77819 1.19673 1.20727 1.20684 1.59004 1.60393 1.02800 1.03786 1.20792 0.94391 0.98498 0.90613 1.21630 1.01999 0.96674 0.95847 1.21363 0.98492 0.94174 1.01351 1.22502 1.00593 0.99426 0.94835 1.21561 0.84418 0.90585 0.97289 0.88781 1.92742 1.58224 1.71809 1.96758 1.22213 0.97736 0.89208 0.99310 0.93707 0.92423 0.94984 0.92008 0.95237 0.92957 0.93199 0.98082 0.90640 0.91034 0.90218 0.93586 0.89844 0.88891 0.93720 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.32 9.84 71.98 0.71 -4.61 16 2 C -0.10 -5.15 5.10 30.59 0.16 -4.99 16 3 C 0.23 11.43 1.67 44.17 0.07 11.50 16 4 H 0.00 0.15 7.64 -2.39 -0.02 0.13 16 5 C -0.55 -29.83 7.60 25.60 0.19 -29.64 16 6 H 0.05 2.73 6.19 -2.91 -0.02 2.72 16 7 C 0.02 1.16 5.30 84.65 0.45 1.61 16 8 N -0.91 -52.24 11.30 21.45 0.24 -52.00 16 9 Si 0.95 43.64 29.54 68.60 2.03 45.66 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 N -0.54 -22.75 2.49 -892.29 -2.22 -24.97 16 14 C 0.09 3.48 4.30 88.07 0.38 3.86 16 15 C -0.12 -3.83 5.61 30.35 0.17 -3.66 16 16 C -0.12 -3.03 5.31 30.26 0.16 -2.87 16 17 C -0.14 -3.15 5.70 31.27 0.18 -2.97 16 18 C 0.10 2.87 3.95 30.16 0.12 2.99 16 19 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 20 F -0.21 -7.45 14.11 44.97 0.63 -6.82 16 21 C 0.04 1.62 4.97 85.45 0.42 2.05 16 22 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.06 2.39 7.55 -2.39 -0.02 2.38 16 24 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.06 3.40 6.00 -2.39 -0.01 3.39 16 26 H 0.03 1.43 6.26 -2.39 -0.01 1.42 16 27 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 28 H 0.05 2.15 5.89 -2.39 -0.01 2.13 16 29 H 0.00 0.06 5.67 -2.39 -0.01 0.04 16 30 H 0.08 2.46 6.00 -2.39 -0.01 2.45 16 31 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.05 1.33 6.58 -2.39 -0.02 1.32 16 34 H 0.08 1.70 8.14 -2.39 -0.02 1.69 16 35 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.04 1.66 6.66 -2.39 -0.02 1.65 16 37 H 0.06 2.35 7.51 -2.39 -0.02 2.33 16 Total: -1.00 -59.58 275.38 4.73 -54.85 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 1.04 Total: 10.00 kcal Atomic # 6 Polarization: -29.74 SS G_CDS: 3.01 Total: -26.73 kcal Atomic # 7 Polarization: -74.99 SS G_CDS: -1.98 Total: -76.97 kcal Atomic # 9 Polarization: -7.45 SS G_CDS: 0.63 Total: -6.82 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -59.58 4.73 -54.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166675.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.037 kcal (2) G-P(sol) polarization free energy of solvation -59.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds