Wall clock time and date at job start Sun Mar 29 2020 21:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47138 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47111 * 119.99988 * 9 7 5 12 12 H 1.48503 * 109.46778 * 239.99962 * 9 7 5 13 13 N 1.46910 * 109.47127 * 65.00091 * 3 2 1 14 14 C 1.48527 * 110.99858 * 62.60388 * 13 3 2 15 15 C 1.54937 * 103.22792 * 159.72228 * 14 13 3 16 16 C 1.54598 * 102.91954 * 322.58748 * 15 14 13 17 17 C 1.52997 * 110.30895 * 263.03948 * 16 15 14 18 18 C 1.53004 * 110.39065 * 140.91468 * 16 15 14 19 19 F 1.39896 * 109.47198 * 64.23409 * 18 16 15 20 20 C 1.47901 * 110.99886 * 180.02562 * 13 3 2 21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 25 25 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 26 26 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 27 27 H 1.09000 * 110.67028 * 278.16004 * 14 13 3 28 28 H 1.09001 * 110.66887 * 41.29136 * 14 13 3 29 29 H 1.08994 * 110.72584 * 204.22605 * 15 14 13 30 30 H 1.09004 * 110.87618 * 81.01520 * 15 14 13 31 31 H 1.08999 * 109.47506 * 175.71713 * 17 16 15 32 32 H 1.09005 * 109.46846 * 295.71620 * 17 16 15 33 33 H 1.08998 * 109.47163 * 55.71226 * 17 16 15 34 34 H 1.09001 * 109.46885 * 184.23349 * 18 16 15 35 35 H 1.08998 * 109.47176 * 304.23165 * 18 16 15 36 36 H 1.08996 * 109.91942 * 333.50600 * 20 13 3 37 37 H 1.09000 * 109.91570 * 94.80389 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5988 1.5453 -0.1938 11 1 6.4963 -0.5190 -1.4627 12 1 6.3999 1.6157 -2.6093 13 7 1.6515 2.0992 1.2553 14 6 2.2773 1.4280 2.4231 15 6 2.2101 2.5088 3.5313 16 6 2.4845 3.8173 2.7550 17 6 3.9604 4.2037 2.8706 18 6 1.5978 4.9466 3.2834 19 9 1.9355 5.2215 4.6129 20 6 2.1281 3.4989 1.2908 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 3.8292 -0.0604 -2.9503 27 1 1.7062 0.5455 2.7113 28 1 3.3123 1.1637 2.2059 29 1 2.9798 2.3381 4.2838 30 1 1.2219 2.5330 3.9908 31 1 4.1547 5.0838 2.2576 32 1 4.1972 4.4262 3.9111 33 1 4.5807 3.3765 2.5257 34 1 1.7485 5.8404 2.6780 35 1 0.5523 4.6432 3.2294 36 1 3.0118 3.6062 0.6619 37 1 1.3401 4.1683 0.9460 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166734.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:57 Heat of formation + Delta-G solvation = -64.371249 kcal Electronic energy + Delta-G solvation = -17261.426279 eV Core-core repulsion = 14566.293942 eV Total energy + Delta-G solvation = -2695.132337 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.37611 -38.83594 -34.93754 -32.07869 -30.79794 -29.01865 -26.96554 -26.25310 -24.36408 -22.75489 -21.25801 -19.12205 -18.55849 -16.53351 -15.70304 -15.40986 -15.35930 -15.06438 -14.08940 -13.95211 -13.12330 -12.86027 -12.65642 -12.31659 -12.11110 -12.02327 -11.77759 -11.44619 -11.13308 -10.92420 -10.83467 -10.57490 -10.48432 -10.37537 -10.09409 -10.00488 -9.92540 -9.63549 -9.45858 -9.07612 -8.38374 -7.20363 -6.01843 -4.14626 3.22915 3.32124 3.34494 4.36507 4.80108 4.89713 5.00461 5.14376 5.22974 5.32724 5.55492 5.71900 5.86984 5.90165 6.07028 6.11205 6.28128 6.35467 6.41561 6.45113 6.49103 6.61009 6.67848 6.68305 6.82783 6.89356 7.06557 7.17524 7.29794 7.58692 7.72776 7.95220 8.12680 8.22261 8.42109 8.95861 9.52245 10.97612 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.026055 B = 0.009484 C = 0.007593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.381948 B = 2951.627590 C = 3686.581213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C 0.204 3.796 4 H 0.038 0.962 5 C -0.541 4.541 6 H 0.059 0.941 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.885 3.115 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.515 5.515 14 C 0.041 3.959 15 C -0.112 4.112 16 C -0.103 4.103 17 C -0.137 4.137 18 C 0.076 3.924 19 F -0.223 7.223 20 C 0.050 3.950 21 H 0.039 0.961 22 H 0.047 0.953 23 H 0.025 0.975 24 H 0.031 0.969 25 H 0.092 0.908 26 H 0.260 0.740 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.362 5.168 7.794 9.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.149 4.149 3 C 0.097 3.903 4 H 0.056 0.944 5 C -0.580 4.580 6 H 0.077 0.923 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.713 3.287 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.239 5.239 14 C -0.087 4.087 15 C -0.151 4.151 16 C -0.104 4.104 17 C -0.194 4.194 18 C 0.021 3.979 19 F -0.205 7.205 20 C -0.079 4.079 21 H 0.058 0.942 22 H 0.066 0.934 23 H 0.044 0.956 24 H 0.050 0.950 25 H 0.110 0.890 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.919 5.051 7.646 9.618 hybrid contribution 1.990 -0.027 -0.287 2.010 sum -0.929 5.024 7.359 8.959 Atomic orbital electron populations 1.21715 0.98872 0.98423 1.00572 1.21567 0.92241 0.99107 1.01963 1.19411 0.93147 0.91321 0.86430 0.94396 1.21758 0.92765 1.38059 1.05449 0.92257 1.24917 0.97742 0.95061 0.95729 1.69887 1.34679 1.38269 1.09390 0.86654 0.86291 0.77758 0.78004 1.19898 1.21010 1.21033 1.65124 1.53608 1.00693 1.04436 1.23071 0.99397 0.95992 0.90210 1.22578 1.00923 0.94121 0.97429 1.22019 0.95656 0.95148 0.97570 1.21833 0.94758 1.01611 1.01187 1.22130 0.99591 0.98578 0.77574 1.92709 1.94301 1.95217 1.38224 1.22752 0.99807 0.92527 0.92826 0.94213 0.93409 0.95606 0.95001 0.89005 0.92943 0.91651 0.92215 0.91962 0.91716 0.92806 0.92784 0.91785 0.91279 0.90654 0.91345 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.80 37.16 0.36 -2.44 16 2 C -0.11 -2.58 5.14 -26.74 -0.14 -2.72 16 3 C 0.20 4.89 1.81 -68.86 -0.12 4.77 16 4 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 5 C -0.54 -13.95 6.34 -34.44 -0.22 -14.16 16 6 H 0.06 1.53 6.03 -52.49 -0.32 1.21 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.42 11.30 55.43 0.63 -23.80 16 9 Si 0.88 20.72 29.54 -169.99 -5.02 15.70 16 10 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.51 -10.57 4.76 -223.87 -1.06 -11.64 16 14 C 0.04 0.79 5.29 -1.90 -0.01 0.78 16 15 C -0.11 -1.82 6.03 -24.87 -0.15 -1.97 16 16 C -0.10 -1.62 0.80 -153.13 -0.12 -1.74 16 17 C -0.14 -2.09 8.09 37.16 0.30 -1.79 16 18 C 0.08 1.04 6.06 37.16 0.23 1.27 16 19 F -0.22 -3.34 16.63 2.25 0.04 -3.30 16 20 C 0.05 0.92 5.67 -2.74 -0.02 0.90 16 21 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 22 H 0.05 0.93 7.75 -51.93 -0.40 0.53 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.03 0.73 6.76 -51.93 -0.35 0.38 16 25 H 0.09 2.41 5.95 -51.93 -0.31 2.10 16 26 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 27 H 0.07 1.23 7.55 -51.93 -0.39 0.83 16 28 H 0.06 1.27 6.07 -51.93 -0.31 0.96 16 29 H 0.06 0.95 7.85 -51.93 -0.41 0.54 16 30 H 0.06 1.00 7.85 -51.93 -0.41 0.59 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.77 7.75 -51.93 -0.40 0.37 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.97 8.11 -51.93 -0.42 0.55 16 36 H 0.07 1.43 5.82 -51.93 -0.30 1.12 16 37 H 0.06 1.03 7.68 -51.93 -0.40 0.63 16 LS Contribution 286.22 15.07 4.31 4.31 Total: -1.00 -26.61 286.22 -7.19 -33.80 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -6.10 Total: 0.32 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: 0.02 Total: -15.39 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: -0.44 Total: -35.44 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.04 Total: -3.30 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -26.61 -7.19 -33.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166734.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.567 kcal (2) G-P(sol) polarization free energy of solvation -26.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds