Wall clock time and date at job start Sun Mar 29 2020 21:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47138 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47111 * 119.99988 * 9 7 5 12 12 H 1.48503 * 109.46778 * 239.99962 * 9 7 5 13 13 N 1.46910 * 109.47127 * 65.00091 * 3 2 1 14 14 C 1.48527 * 110.99858 * 62.60388 * 13 3 2 15 15 C 1.54937 * 103.22792 * 159.72228 * 14 13 3 16 16 C 1.54598 * 102.91954 * 322.58748 * 15 14 13 17 17 C 1.52997 * 110.30895 * 263.03948 * 16 15 14 18 18 C 1.53004 * 110.39065 * 140.91468 * 16 15 14 19 19 F 1.39896 * 109.47198 * 64.23409 * 18 16 15 20 20 C 1.47901 * 110.99886 * 180.02562 * 13 3 2 21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 25 25 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 26 26 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 27 27 H 1.09000 * 110.67028 * 278.16004 * 14 13 3 28 28 H 1.09001 * 110.66887 * 41.29136 * 14 13 3 29 29 H 1.08994 * 110.72584 * 204.22605 * 15 14 13 30 30 H 1.09004 * 110.87618 * 81.01520 * 15 14 13 31 31 H 1.08999 * 109.47506 * 175.71713 * 17 16 15 32 32 H 1.09005 * 109.46846 * 295.71620 * 17 16 15 33 33 H 1.08998 * 109.47163 * 55.71226 * 17 16 15 34 34 H 1.09001 * 109.46885 * 184.23349 * 18 16 15 35 35 H 1.08998 * 109.47176 * 304.23165 * 18 16 15 36 36 H 1.08996 * 109.91942 * 333.50600 * 20 13 3 37 37 H 1.09000 * 109.91570 * 94.80389 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5988 1.5453 -0.1938 11 1 6.4963 -0.5190 -1.4627 12 1 6.3999 1.6157 -2.6093 13 7 1.6515 2.0992 1.2553 14 6 2.2773 1.4280 2.4231 15 6 2.2101 2.5088 3.5313 16 6 2.4845 3.8173 2.7550 17 6 3.9604 4.2037 2.8706 18 6 1.5978 4.9466 3.2834 19 9 1.9355 5.2215 4.6129 20 6 2.1281 3.4989 1.2908 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 3.8292 -0.0604 -2.9503 27 1 1.7062 0.5455 2.7113 28 1 3.3123 1.1637 2.2059 29 1 2.9798 2.3381 4.2838 30 1 1.2219 2.5330 3.9908 31 1 4.1547 5.0838 2.2576 32 1 4.1972 4.4262 3.9111 33 1 4.5807 3.3765 2.5257 34 1 1.7485 5.8404 2.6780 35 1 0.5523 4.6432 3.2294 36 1 3.0118 3.6062 0.6619 37 1 1.3401 4.1683 0.9460 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166734.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:56 Heat of formation + Delta-G solvation = -79.256303 kcal Electronic energy + Delta-G solvation = -17262.071743 eV Core-core repulsion = 14566.293942 eV Total energy + Delta-G solvation = -2695.777801 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.49178 -40.37012 -36.63367 -33.96925 -32.44404 -30.52417 -28.50163 -27.73716 -25.95157 -24.43151 -22.89722 -20.86320 -19.95603 -18.42605 -17.13412 -16.80075 -16.63425 -16.47457 -15.86677 -15.40786 -14.90693 -14.38779 -14.15653 -13.94277 -13.56361 -13.43188 -13.24767 -13.17019 -12.89627 -12.69058 -12.46465 -12.17454 -11.96663 -11.80438 -11.74535 -11.53797 -11.42973 -11.23851 -11.19271 -10.93313 -10.42235 -8.96970 -8.03167 -6.23695 1.34652 1.38621 1.47105 2.39485 3.15771 3.52526 3.56303 3.67613 3.83338 4.17734 4.29351 4.45031 4.55255 4.58958 4.63218 4.74343 4.82500 4.86234 4.91950 4.93941 5.02827 5.09364 5.20257 5.22738 5.27598 5.35539 5.44533 5.45529 5.50509 5.64098 5.79549 6.05725 6.19264 6.40002 6.54325 6.97765 7.45918 8.92747 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.026055 B = 0.009484 C = 0.007593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.381948 B = 2951.627590 C = 3686.581213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.106 4.106 3 C 0.211 3.789 4 H 0.003 0.997 5 C -0.543 4.543 6 H 0.055 0.945 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.942 3.058 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.514 5.514 14 C 0.042 3.958 15 C -0.104 4.104 16 C -0.099 4.099 17 C -0.133 4.133 18 C 0.081 3.919 19 F -0.228 7.228 20 C 0.049 3.951 21 H 0.032 0.968 22 H 0.057 0.943 23 H 0.044 0.956 24 H 0.030 0.970 25 H 0.061 0.939 26 H 0.260 0.740 27 H 0.068 0.932 28 H 0.033 0.967 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.040 0.960 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.040 0.960 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.636 6.041 9.284 11.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.145 4.145 3 C 0.103 3.897 4 H 0.021 0.979 5 C -0.582 4.582 6 H 0.073 0.927 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.769 3.231 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.237 5.237 14 C -0.086 4.086 15 C -0.142 4.142 16 C -0.100 4.100 17 C -0.191 4.191 18 C 0.026 3.974 19 F -0.209 7.209 20 C -0.080 4.080 21 H 0.052 0.948 22 H 0.076 0.924 23 H 0.064 0.936 24 H 0.049 0.951 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.052 0.948 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.059 0.941 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.193 5.933 9.152 11.365 hybrid contribution 2.063 -0.290 -0.743 2.212 sum -1.130 5.644 8.409 10.190 Atomic orbital electron populations 1.21575 0.96293 0.99785 1.00706 1.21421 0.94517 0.98243 1.00289 1.19162 0.91964 0.91542 0.87005 0.97895 1.21985 0.93894 1.37219 1.05073 0.92694 1.25593 1.01473 0.95148 0.95719 1.70011 1.36069 1.39184 1.09836 0.85752 0.81872 0.77606 0.77891 1.19495 1.20885 1.20863 1.65059 1.53600 1.01670 1.03375 1.23046 0.97648 0.97196 0.90736 1.22543 1.02182 0.92906 0.96553 1.21964 0.96463 0.96059 0.95467 1.21796 0.94099 1.01058 1.02101 1.22124 0.99495 0.98412 0.77365 1.92705 1.94372 1.95184 1.38632 1.22764 0.99046 0.91591 0.94588 0.94842 0.92373 0.93643 0.95145 0.92061 0.93045 0.91373 0.94839 0.90831 0.90268 0.91947 0.91405 0.94064 0.89287 0.89402 0.94135 0.90877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.01 9.80 71.98 0.71 -4.30 16 2 C -0.11 -5.02 5.14 30.59 0.16 -4.86 16 3 C 0.21 10.31 1.81 44.16 0.08 10.39 16 4 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 5 C -0.54 -28.52 6.34 25.60 0.16 -28.36 16 6 H 0.05 2.89 6.03 -2.91 -0.02 2.87 16 7 C 0.02 1.10 5.29 84.65 0.45 1.55 16 8 N -0.91 -51.57 11.30 21.45 0.24 -51.33 16 9 Si 0.94 43.09 29.54 68.60 2.03 45.12 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 N -0.51 -20.86 4.76 -862.18 -4.10 -24.96 16 14 C 0.04 1.57 5.29 86.65 0.46 2.02 16 15 C -0.10 -3.11 6.03 31.80 0.19 -2.92 16 16 C -0.10 -2.89 0.80 -51.29 -0.04 -2.93 16 17 C -0.13 -3.85 8.09 71.98 0.58 -3.27 16 18 C 0.08 1.93 6.06 71.98 0.44 2.37 16 19 F -0.23 -6.00 16.63 44.97 0.75 -5.26 16 20 C 0.05 1.76 5.67 86.46 0.49 2.25 16 21 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.06 2.17 7.75 -2.39 -0.02 2.15 16 23 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 24 H 0.03 1.40 6.76 -2.39 -0.02 1.39 16 25 H 0.06 3.29 5.95 -2.39 -0.01 3.28 16 26 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 27 H 0.07 2.48 7.55 -2.39 -0.02 2.46 16 28 H 0.03 1.43 6.07 -2.39 -0.01 1.42 16 29 H 0.07 2.06 7.85 -2.39 -0.02 2.04 16 30 H 0.08 2.18 7.85 -2.39 -0.02 2.16 16 31 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.07 1.77 7.75 -2.38 -0.02 1.75 16 33 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.09 1.93 8.11 -2.39 -0.02 1.91 16 36 H 0.04 1.70 5.82 -2.39 -0.01 1.68 16 37 H 0.07 2.42 7.68 -2.39 -0.02 2.40 16 Total: -1.00 -57.01 286.22 3.61 -53.40 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 1.03 Total: 11.08 kcal Atomic # 6 Polarization: -31.73 SS G_CDS: 3.67 Total: -28.06 kcal Atomic # 7 Polarization: -72.43 SS G_CDS: -3.86 Total: -76.28 kcal Atomic # 9 Polarization: -6.00 SS G_CDS: 0.75 Total: -5.26 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -57.01 3.61 -53.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166734.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.857 kcal (2) G-P(sol) polarization free energy of solvation -57.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds