Wall clock time and date at job start Sun Mar 29 2020 21:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47149 * 2 1 4 4 H 1.08995 * 109.47162 * 305.22908 * 3 2 1 5 5 C 1.50700 * 109.47219 * 185.22587 * 3 2 1 6 6 H 1.07996 * 120.00285 * 304.99926 * 5 3 2 7 7 C 1.37880 * 119.99851 * 125.27156 * 5 3 2 8 8 N 1.31506 * 119.99869 * 172.76250 * 7 5 3 9 9 Si 1.86801 * 119.99716 * 352.76209 * 7 5 3 10 10 H 1.48505 * 109.46998 * 84.57524 * 9 7 5 11 11 H 1.48503 * 109.46831 * 204.57034 * 9 7 5 12 12 H 1.48498 * 109.47398 * 324.56867 * 9 7 5 13 13 N 1.46899 * 109.46692 * 65.22687 * 3 2 1 14 14 C 1.48562 * 110.99979 * 69.87784 * 13 3 2 15 15 C 1.54381 * 104.59439 * 159.03997 * 14 13 3 16 16 C 1.54266 * 105.05922 * 336.14446 * 15 14 13 17 17 C 1.52997 * 110.32465 * 118.90252 * 16 15 14 18 18 C 1.53003 * 110.31917 * 241.10665 * 16 15 14 19 19 F 1.39902 * 109.46683 * 178.54555 * 18 16 15 20 20 C 1.48563 * 110.99921 * 185.29491 * 13 3 2 21 21 H 1.09000 * 109.47157 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47140 * 299.99712 * 1 2 3 23 23 H 1.09002 * 109.47357 * 60.00177 * 1 2 3 24 24 H 1.08999 * 109.47140 * 240.00288 * 2 1 3 25 25 H 1.09002 * 109.47357 * 119.99823 * 2 1 3 26 26 H 0.97009 * 120.00061 * 180.02562 * 8 7 5 27 27 H 1.09002 * 110.40726 * 277.81350 * 14 13 3 28 28 H 1.08992 * 110.41435 * 40.25781 * 14 13 3 29 29 H 1.08999 * 110.32905 * 95.04380 * 15 14 13 30 30 H 1.09002 * 110.32258 * 217.25044 * 15 14 13 31 31 H 1.08993 * 109.47476 * 61.44615 * 17 16 15 32 32 H 1.08993 * 109.47048 * 181.45468 * 17 16 15 33 33 H 1.09009 * 109.46838 * 301.44930 * 17 16 15 34 34 H 1.09004 * 109.47387 * 298.54335 * 18 16 15 35 35 H 1.08994 * 109.47656 * 58.55059 * 18 16 15 36 36 H 1.09005 * 110.40870 * 319.73447 * 20 13 3 37 37 H 1.08991 * 110.41302 * 82.17741 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6022 1.9827 -0.8394 5 6 3.5414 1.4445 -0.1294 6 1 4.1446 0.8858 0.5709 7 6 4.1454 2.1643 -1.1385 8 7 5.4548 2.2833 -1.1683 9 14 3.1038 2.9702 -2.4632 10 1 2.6306 4.2937 -1.9840 11 1 3.9184 3.1509 -3.6917 12 1 1.9345 2.1067 -2.7672 13 7 1.6560 2.0976 1.2576 14 6 2.4189 1.5389 2.4034 15 6 2.3342 2.6274 3.4949 16 6 2.0739 3.9419 2.7306 17 6 0.7384 4.5515 3.1614 18 6 3.2144 4.9324 2.9735 19 9 2.9770 6.1041 2.2468 20 6 2.0232 3.5370 1.2418 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 5.8797 2.7900 -1.8781 27 1 1.9585 0.6144 2.7520 28 1 3.4568 1.3644 2.1202 29 1 1.5105 2.4165 4.1769 30 1 3.2745 2.6879 4.0429 31 1 0.7717 4.7845 4.2257 32 1 0.5564 5.4648 2.5951 33 1 -0.0645 3.8394 2.9703 34 1 3.2703 5.1690 4.0361 35 1 4.1560 4.4889 2.6500 36 1 2.9993 3.6753 0.7768 37 1 1.2650 4.1170 0.7157 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166735.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:00 Heat of formation + Delta-G solvation = -63.692801 kcal Electronic energy + Delta-G solvation = -17452.894536 eV Core-core repulsion = 14757.791618 eV Total energy + Delta-G solvation = -2695.102917 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.19272 -38.75871 -35.05071 -32.16374 -31.20780 -28.92571 -26.98088 -26.62084 -24.37394 -22.64893 -21.45288 -18.90517 -18.59154 -16.97226 -15.59522 -15.54877 -15.32264 -14.70026 -14.16303 -13.73546 -13.24512 -13.15060 -12.86231 -12.53826 -12.28931 -12.04365 -11.94834 -11.49044 -11.19251 -11.00082 -10.92902 -10.60186 -10.51896 -10.28889 -10.20888 -9.99928 -9.85538 -9.64298 -9.56056 -9.13237 -8.64134 -7.18051 -6.18438 -4.20485 3.24693 3.32879 3.34705 4.33670 4.80121 4.94479 5.06518 5.13423 5.35601 5.47507 5.60096 5.68922 5.85581 5.92052 6.00939 6.08303 6.10105 6.13591 6.25957 6.34919 6.43986 6.48386 6.55999 6.64752 6.73410 6.81145 6.92727 6.96426 6.98034 7.18461 7.25088 7.60243 7.89474 8.24525 8.43592 8.85772 9.46023 10.93586 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.020473 B = 0.012691 C = 0.009670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.327676 B = 2205.818054 C = 2894.983239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 C 0.157 3.843 4 H 0.045 0.955 5 C -0.539 4.539 6 H 0.077 0.923 7 C 0.080 3.920 8 N -0.893 5.893 9 Si 0.869 3.131 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.265 1.265 13 N -0.507 5.507 14 C 0.033 3.967 15 C -0.110 4.110 16 C -0.097 4.097 17 C -0.130 4.130 18 C 0.073 3.927 19 F -0.220 7.220 20 C 0.047 3.953 21 H 0.032 0.968 22 H 0.059 0.941 23 H 0.039 0.961 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.265 0.735 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.924 2.048 7.587 10.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.139 4.139 3 C 0.051 3.949 4 H 0.063 0.937 5 C -0.578 4.578 6 H 0.095 0.905 7 C -0.124 4.124 8 N -0.530 5.530 9 Si 0.696 3.304 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.190 1.190 13 N -0.231 5.231 14 C -0.095 4.095 15 C -0.148 4.148 16 C -0.098 4.098 17 C -0.187 4.187 18 C 0.018 3.982 19 F -0.201 7.201 20 C -0.081 4.081 21 H 0.051 0.949 22 H 0.078 0.922 23 H 0.059 0.941 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.362 2.056 7.503 10.711 hybrid contribution 0.547 0.626 -1.014 1.311 sum -6.815 2.682 6.489 9.785 Atomic orbital electron populations 1.21756 0.97742 0.99190 1.01461 1.21512 0.93525 0.98303 1.00609 1.19894 0.94555 0.91554 0.88932 0.93728 1.21461 0.90661 1.30916 1.14778 0.90497 1.25100 0.94708 0.95212 0.97339 1.69913 1.08929 1.40852 1.33294 0.86994 0.80785 0.80530 0.82084 1.19737 1.21526 1.18991 1.65900 1.50964 1.01441 1.04756 1.22974 0.99661 0.96052 0.90824 1.22322 1.00673 0.93979 0.97794 1.21878 0.94926 0.95012 0.97984 1.21770 0.96457 1.00660 0.99832 1.22165 0.99502 0.81830 0.94679 1.92721 1.96090 1.50869 1.80447 1.22960 1.01125 0.91101 0.92961 0.94868 0.92213 0.94141 0.92848 0.93225 0.92555 0.92091 0.91243 0.91702 0.92144 0.93448 0.92766 0.91661 0.91583 0.90413 0.91617 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.80 37.16 0.36 -2.18 16 2 C -0.10 -2.07 5.39 -26.73 -0.14 -2.22 16 3 C 0.16 3.60 1.74 -68.86 -0.12 3.49 16 4 H 0.04 1.09 4.69 -51.93 -0.24 0.84 16 5 C -0.54 -14.25 6.64 -34.44 -0.23 -14.47 16 6 H 0.08 2.21 6.67 -52.49 -0.35 1.86 16 7 C 0.08 2.22 5.03 -17.82 -0.09 2.13 16 8 N -0.89 -26.31 13.96 55.43 0.77 -25.54 16 9 Si 0.87 21.40 27.02 -169.99 -4.59 16.81 16 10 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.26 -6.34 6.70 56.52 0.38 -5.96 16 13 N -0.51 -10.42 4.82 -223.41 -1.08 -11.50 16 14 C 0.03 0.63 5.54 -2.18 -0.01 0.61 16 15 C -0.11 -1.71 6.30 -25.35 -0.16 -1.87 16 16 C -0.10 -1.61 0.86 -153.12 -0.13 -1.74 16 17 C -0.13 -1.88 8.11 37.16 0.30 -1.58 16 18 C 0.07 1.17 6.07 37.16 0.23 1.39 16 19 F -0.22 -3.97 16.69 2.25 0.04 -3.94 16 20 C 0.05 0.96 5.28 -2.18 -0.01 0.95 16 21 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.06 1.04 7.76 -51.93 -0.40 0.64 16 23 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.05 0.99 7.04 -51.93 -0.37 0.63 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.06 1.08 7.63 -51.93 -0.40 0.69 16 28 H 0.07 1.51 5.55 -51.93 -0.29 1.23 16 29 H 0.06 0.91 7.71 -51.93 -0.40 0.51 16 30 H 0.06 0.87 7.71 -51.93 -0.40 0.46 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.80 7.82 -51.93 -0.41 0.39 16 33 H 0.06 0.96 8.14 -51.92 -0.42 0.53 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 1.31 8.12 -51.93 -0.42 0.89 16 36 H 0.07 1.58 6.29 -51.93 -0.33 1.25 16 37 H 0.06 1.26 7.86 -51.93 -0.41 0.85 16 LS Contribution 286.17 15.07 4.31 4.31 Total: -1.00 -28.09 286.17 -6.66 -34.75 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -6.10 Total: 0.58 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -0.01 Total: -15.48 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: -0.30 Total: -37.03 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.04 Total: -3.94 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.59 Total: 16.81 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.09 -6.66 -34.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166735.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.943 kcal (2) G-P(sol) polarization free energy of solvation -28.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds