Wall clock time and date at job start Sun Mar 29 2020 21:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47149 * 2 1 4 4 H 1.08995 * 109.47162 * 305.22908 * 3 2 1 5 5 C 1.50700 * 109.47219 * 185.22587 * 3 2 1 6 6 H 1.07996 * 120.00285 * 304.99926 * 5 3 2 7 7 C 1.37880 * 119.99851 * 125.27156 * 5 3 2 8 8 N 1.31506 * 119.99869 * 172.76250 * 7 5 3 9 9 Si 1.86801 * 119.99716 * 352.76209 * 7 5 3 10 10 H 1.48505 * 109.46998 * 84.57524 * 9 7 5 11 11 H 1.48503 * 109.46831 * 204.57034 * 9 7 5 12 12 H 1.48498 * 109.47398 * 324.56867 * 9 7 5 13 13 N 1.46899 * 109.46692 * 65.22687 * 3 2 1 14 14 C 1.48562 * 110.99979 * 69.87784 * 13 3 2 15 15 C 1.54381 * 104.59439 * 159.03997 * 14 13 3 16 16 C 1.54266 * 105.05922 * 336.14446 * 15 14 13 17 17 C 1.52997 * 110.32465 * 118.90252 * 16 15 14 18 18 C 1.53003 * 110.31917 * 241.10665 * 16 15 14 19 19 F 1.39902 * 109.46683 * 178.54555 * 18 16 15 20 20 C 1.48563 * 110.99921 * 185.29491 * 13 3 2 21 21 H 1.09000 * 109.47157 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47140 * 299.99712 * 1 2 3 23 23 H 1.09002 * 109.47357 * 60.00177 * 1 2 3 24 24 H 1.08999 * 109.47140 * 240.00288 * 2 1 3 25 25 H 1.09002 * 109.47357 * 119.99823 * 2 1 3 26 26 H 0.97009 * 120.00061 * 180.02562 * 8 7 5 27 27 H 1.09002 * 110.40726 * 277.81350 * 14 13 3 28 28 H 1.08992 * 110.41435 * 40.25781 * 14 13 3 29 29 H 1.08999 * 110.32905 * 95.04380 * 15 14 13 30 30 H 1.09002 * 110.32258 * 217.25044 * 15 14 13 31 31 H 1.08993 * 109.47476 * 61.44615 * 17 16 15 32 32 H 1.08993 * 109.47048 * 181.45468 * 17 16 15 33 33 H 1.09009 * 109.46838 * 301.44930 * 17 16 15 34 34 H 1.09004 * 109.47387 * 298.54335 * 18 16 15 35 35 H 1.08994 * 109.47656 * 58.55059 * 18 16 15 36 36 H 1.09005 * 110.40870 * 319.73447 * 20 13 3 37 37 H 1.08991 * 110.41302 * 82.17741 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6022 1.9827 -0.8394 5 6 3.5414 1.4445 -0.1294 6 1 4.1446 0.8858 0.5709 7 6 4.1454 2.1643 -1.1385 8 7 5.4548 2.2833 -1.1683 9 14 3.1038 2.9702 -2.4632 10 1 2.6306 4.2937 -1.9840 11 1 3.9184 3.1509 -3.6917 12 1 1.9345 2.1067 -2.7672 13 7 1.6560 2.0976 1.2576 14 6 2.4189 1.5389 2.4034 15 6 2.3342 2.6274 3.4949 16 6 2.0739 3.9419 2.7306 17 6 0.7384 4.5515 3.1614 18 6 3.2144 4.9324 2.9735 19 9 2.9770 6.1041 2.2468 20 6 2.0232 3.5370 1.2418 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 5.8797 2.7900 -1.8781 27 1 1.9585 0.6144 2.7520 28 1 3.4568 1.3644 2.1202 29 1 1.5105 2.4165 4.1769 30 1 3.2745 2.6879 4.0429 31 1 0.7717 4.7845 4.2257 32 1 0.5564 5.4648 2.5951 33 1 -0.0645 3.8394 2.9703 34 1 3.2703 5.1690 4.0361 35 1 4.1560 4.4889 2.6500 36 1 2.9993 3.6753 0.7768 37 1 1.2650 4.1170 0.7157 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166735.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:59 Heat of formation + Delta-G solvation = -81.262108 kcal Electronic energy + Delta-G solvation = -17453.656398 eV Core-core repulsion = 14757.791618 eV Total energy + Delta-G solvation = -2695.864780 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.55876 -40.32502 -36.67257 -34.23462 -32.69181 -30.43502 -28.80006 -27.83942 -26.01851 -24.30896 -23.01201 -20.62443 -20.07200 -18.96933 -17.19681 -16.94209 -16.72776 -16.31111 -15.89626 -15.33054 -14.92778 -14.75663 -14.46629 -14.05766 -13.86285 -13.66179 -13.39940 -12.99406 -12.86789 -12.64137 -12.52101 -12.07439 -12.04388 -11.78075 -11.73426 -11.65781 -11.47074 -11.20866 -11.16519 -11.01733 -10.74862 -8.97356 -8.35286 -6.38381 1.25315 1.27939 1.35535 2.26091 2.97704 3.42432 3.57977 3.76473 3.91747 4.10567 4.28179 4.32196 4.37917 4.55179 4.65742 4.67738 4.70196 4.79752 4.82374 4.91842 4.95499 5.11741 5.14385 5.23663 5.24757 5.29873 5.36247 5.38795 5.50001 5.51935 5.61859 5.66360 6.08660 6.37122 6.47034 6.70663 7.30479 8.80110 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.020473 B = 0.012691 C = 0.009670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.327676 B = 2205.818054 C = 2894.983239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.100 4.100 3 C 0.158 3.842 4 H 0.033 0.967 5 C -0.526 4.526 6 H 0.043 0.957 7 C 0.030 3.970 8 N -0.939 5.939 9 Si 0.919 3.081 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.250 1.250 13 N -0.496 5.496 14 C 0.032 3.968 15 C -0.100 4.100 16 C -0.094 4.094 17 C -0.123 4.123 18 C 0.070 3.930 19 F -0.233 7.233 20 C 0.043 3.957 21 H 0.058 0.942 22 H 0.063 0.937 23 H 0.039 0.961 24 H 0.042 0.958 25 H 0.051 0.949 26 H 0.264 0.736 27 H 0.076 0.924 28 H 0.031 0.969 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.047 0.953 33 H 0.065 0.935 34 H 0.109 0.891 35 H 0.057 0.943 36 H 0.022 0.978 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.277 2.203 9.125 13.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.139 4.139 3 C 0.050 3.950 4 H 0.051 0.949 5 C -0.565 4.565 6 H 0.061 0.939 7 C -0.170 4.170 8 N -0.579 5.579 9 Si 0.745 3.255 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.174 1.174 13 N -0.219 5.219 14 C -0.097 4.097 15 C -0.138 4.138 16 C -0.095 4.095 17 C -0.180 4.180 18 C 0.015 3.985 19 F -0.215 7.215 20 C -0.085 4.085 21 H 0.077 0.923 22 H 0.082 0.918 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.049 0.951 29 H 0.113 0.887 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.127 0.873 35 H 0.076 0.924 36 H 0.041 0.959 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.737 2.202 9.050 13.474 hybrid contribution 1.320 0.528 -1.425 2.013 sum -8.417 2.729 7.625 11.680 Atomic orbital electron populations 1.21644 0.94870 1.00991 1.01582 1.21443 0.96008 0.96174 1.00235 1.19865 0.91899 0.93349 0.89849 0.94859 1.21657 0.92581 1.29063 1.13197 0.93918 1.25767 0.95476 0.96208 0.99513 1.70038 1.10620 1.42823 1.34423 0.86166 0.79813 0.79836 0.79695 1.19678 1.21409 1.17413 1.65854 1.50549 1.01461 1.04079 1.22992 0.97206 0.98098 0.91361 1.22312 1.02765 0.91761 0.96922 1.21889 0.96718 0.95845 0.95003 1.21718 0.94594 1.00107 1.01581 1.22310 0.98304 0.81139 0.96714 1.92694 1.96077 1.51596 1.81108 1.22960 0.98436 0.91177 0.95960 0.92258 0.91837 0.94226 0.93906 0.93053 0.92713 0.90550 0.95061 0.88692 0.90643 0.90424 0.93391 0.91619 0.87347 0.92442 0.95927 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.34 9.80 71.98 0.71 -3.63 16 2 C -0.10 -4.00 5.39 30.59 0.16 -3.84 16 3 C 0.16 7.23 1.74 44.17 0.08 7.31 16 4 H 0.03 1.61 4.69 -2.39 -0.01 1.59 16 5 C -0.53 -28.73 6.64 25.60 0.17 -28.56 16 6 H 0.04 2.59 6.67 -2.91 -0.02 2.57 16 7 C 0.03 1.69 5.03 84.66 0.43 2.12 16 8 N -0.94 -57.70 13.96 21.45 0.30 -57.41 16 9 Si 0.92 44.93 27.02 68.60 1.85 46.79 16 10 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 12 H -0.25 -11.51 6.70 99.48 0.67 -10.84 16 13 N -0.50 -19.99 4.82 -860.73 -4.15 -24.14 16 14 C 0.03 1.16 5.54 86.45 0.48 1.64 16 15 C -0.10 -2.83 6.30 31.49 0.20 -2.63 16 16 C -0.09 -2.89 0.86 -51.29 -0.04 -2.94 16 17 C -0.12 -3.11 8.11 71.98 0.58 -2.53 16 18 C 0.07 2.12 6.07 71.98 0.44 2.55 16 19 F -0.23 -8.20 16.69 44.97 0.75 -7.45 16 20 C 0.04 1.77 5.28 86.45 0.46 2.23 16 21 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 22 H 0.06 2.01 7.76 -2.39 -0.02 2.00 16 23 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.05 2.00 7.04 -2.39 -0.02 1.99 16 26 H 0.26 15.40 8.31 -92.70 -0.77 14.63 16 27 H 0.08 2.56 7.63 -2.39 -0.02 2.54 16 28 H 0.03 1.40 5.55 -2.39 -0.01 1.38 16 29 H 0.09 2.19 7.71 -2.39 -0.02 2.17 16 30 H 0.07 1.94 7.71 -2.39 -0.02 1.92 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.05 1.28 7.82 -2.39 -0.02 1.26 16 33 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.11 2.38 8.14 -2.38 -0.02 2.36 16 35 H 0.06 1.95 8.12 -2.39 -0.02 1.93 16 36 H 0.02 1.11 6.29 -2.38 -0.01 1.10 16 37 H 0.06 2.31 7.86 -2.39 -0.02 2.29 16 Total: -1.00 -62.83 286.17 3.39 -59.43 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 0.99 Total: 11.05 kcal Atomic # 6 Polarization: -31.92 SS G_CDS: 3.65 Total: -28.27 kcal Atomic # 7 Polarization: -77.69 SS G_CDS: -3.85 Total: -81.55 kcal Atomic # 9 Polarization: -8.20 SS G_CDS: 0.75 Total: -7.45 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.85 Total: 46.79 kcal Total: -62.83 3.39 -59.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166735.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.827 kcal (2) G-P(sol) polarization free energy of solvation -62.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds