Wall clock time and date at job start Sun Mar 29 2020 21:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47395 * 2 1 4 4 H 1.09001 * 109.46676 * 56.02646 * 3 2 1 5 5 C 1.50696 * 109.47450 * 176.02705 * 3 2 1 6 6 H 1.08007 * 119.99750 * 116.98473 * 5 3 2 7 7 C 1.37875 * 120.00141 * 296.98063 * 5 3 2 8 8 N 1.31513 * 120.00236 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99971 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47065 * 180.02562 * 9 7 5 11 11 H 1.48500 * 109.47353 * 300.00161 * 9 7 5 12 12 H 1.48509 * 109.47075 * 60.00680 * 9 7 5 13 13 N 1.46907 * 109.46748 * 296.03219 * 3 2 1 14 14 C 1.48559 * 110.99648 * 300.76588 * 13 3 2 15 15 C 1.54377 * 104.59404 * 200.96343 * 14 13 3 16 16 C 1.54257 * 105.06194 * 23.85272 * 15 14 13 17 17 C 1.52990 * 110.32732 * 241.10450 * 16 15 14 18 18 C 1.53008 * 110.31879 * 118.89527 * 16 15 14 19 19 F 1.39901 * 109.47160 * 301.45556 * 18 16 15 20 20 C 1.48561 * 110.99520 * 185.35565 * 13 3 2 21 21 H 1.08998 * 109.46904 * 175.19901 * 1 2 3 22 22 H 1.08997 * 109.47027 * 295.19645 * 1 2 3 23 23 H 1.09000 * 109.47225 * 55.20303 * 1 2 3 24 24 H 1.09002 * 109.47516 * 239.99623 * 2 1 3 25 25 H 1.09003 * 109.47051 * 119.99716 * 2 1 3 26 26 H 0.96998 * 120.00828 * 179.97438 * 8 7 5 27 27 H 1.09000 * 110.41606 * 319.74776 * 14 13 3 28 28 H 1.09001 * 110.40803 * 82.18632 * 14 13 3 29 29 H 1.09002 * 110.32623 * 142.75366 * 15 14 13 30 30 H 1.09008 * 110.32183 * 264.96086 * 15 14 13 31 31 H 1.08995 * 109.47245 * 58.54704 * 17 16 15 32 32 H 1.09007 * 109.47206 * 178.54955 * 17 16 15 33 33 H 1.08998 * 109.47167 * 298.54370 * 17 16 15 34 34 H 1.08994 * 109.47231 * 61.46192 * 18 16 15 35 35 H 1.09008 * 109.46630 * 181.45940 * 18 16 15 36 36 H 1.09004 * 110.41178 * 277.81055 * 20 13 3 37 37 H 1.08994 * 110.41742 * 40.25804 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6197 1.9764 0.8523 5 6 3.5438 1.4436 0.0984 6 1 4.1374 1.8491 -0.7076 7 6 4.1618 0.9272 1.2175 8 7 3.4390 0.4331 2.1988 9 14 6.0258 0.9280 1.3391 10 1 6.4378 0.3217 2.6306 11 1 6.5954 0.1381 0.2180 12 1 6.5261 2.3243 1.2654 13 7 1.6302 2.1067 -1.2446 14 6 2.1704 1.3944 -2.4310 15 6 2.1395 2.4442 -3.5624 16 6 2.1693 3.8089 -2.8439 17 6 0.9062 4.6085 -3.1694 18 6 3.4172 4.5958 -3.2497 19 9 4.5601 3.8555 -2.9290 20 6 2.2158 3.4688 -1.3388 21 1 -0.3633 -1.0241 -0.0860 22 1 -0.3633 0.4375 0.9299 23 1 -0.3634 0.5865 -0.8439 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.8737 0.0694 2.9860 27 1 3.1930 1.0663 -2.2445 28 1 1.5376 0.5437 -2.6843 29 1 3.0138 2.3350 -4.2042 30 1 1.2249 2.3440 -4.1470 31 1 0.0277 4.0407 -2.8630 32 1 0.9296 5.5582 -2.6349 33 1 0.8615 4.7964 -4.2421 34 1 3.3952 4.7837 -4.3231 35 1 3.4375 5.5455 -2.7150 36 1 1.6172 4.1802 -0.7697 37 1 3.2455 3.4655 -0.9814 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166737.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:04 Heat of formation + Delta-G solvation = -62.113935 kcal Electronic energy + Delta-G solvation = -17433.659066 eV Core-core repulsion = 14738.624613 eV Total energy + Delta-G solvation = -2695.034453 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.23237 -38.67164 -34.98536 -32.06381 -30.88610 -28.99090 -26.40712 -26.33239 -24.59173 -22.68616 -21.28928 -19.04496 -18.48503 -16.47392 -15.66534 -15.51927 -15.31734 -14.59655 -14.15175 -13.54519 -13.19704 -13.02620 -12.76479 -12.37543 -12.19103 -11.91951 -11.48454 -11.27652 -11.09515 -10.93959 -10.82423 -10.55086 -10.51433 -10.15021 -10.12155 -9.97198 -9.82449 -9.64723 -9.38578 -9.03315 -8.31045 -7.16463 -5.94849 -4.05799 3.33197 3.37244 3.41896 4.45340 4.80313 4.83274 5.07985 5.22933 5.30711 5.47107 5.53006 5.63546 5.81866 5.93524 5.94217 6.09534 6.32401 6.36542 6.40196 6.47360 6.48842 6.63585 6.69324 6.75532 6.93062 6.94361 7.08488 7.20787 7.31401 7.64091 7.77976 7.99636 8.17573 8.26463 8.47330 9.04797 9.60833 11.06091 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.022722 B = 0.011461 C = 0.008448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.994602 B = 2442.458837 C = 3313.595622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 C 0.202 3.798 4 H 0.040 0.960 5 C -0.542 4.542 6 H 0.062 0.938 7 C 0.069 3.931 8 N -0.887 5.887 9 Si 0.885 3.115 10 H -0.288 1.288 11 H -0.278 1.278 12 H -0.277 1.277 13 N -0.506 5.506 14 C 0.038 3.962 15 C -0.113 4.113 16 C -0.103 4.103 17 C -0.127 4.127 18 C 0.075 3.925 19 F -0.212 7.212 20 C 0.044 3.956 21 H 0.025 0.975 22 H 0.039 0.961 23 H 0.049 0.951 24 H 0.032 0.968 25 H 0.085 0.915 26 H 0.261 0.739 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.254 5.913 -9.563 11.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.147 4.147 3 C 0.095 3.905 4 H 0.058 0.942 5 C -0.581 4.581 6 H 0.080 0.920 7 C -0.134 4.134 8 N -0.525 5.525 9 Si 0.713 3.287 10 H -0.214 1.214 11 H -0.203 1.203 12 H -0.203 1.203 13 N -0.230 5.230 14 C -0.090 4.090 15 C -0.152 4.152 16 C -0.104 4.104 17 C -0.184 4.184 18 C 0.019 3.981 19 F -0.193 7.193 20 C -0.085 4.085 21 H 0.044 0.956 22 H 0.058 0.942 23 H 0.068 0.932 24 H 0.051 0.949 25 H 0.104 0.896 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.810 5.806 -9.338 11.637 hybrid contribution 2.061 -0.125 0.237 2.078 sum -1.749 5.681 -9.102 10.870 Atomic orbital electron populations 1.21733 0.98844 0.98497 1.00664 1.21550 0.92245 0.99218 1.01641 1.19378 0.93088 0.91093 0.86931 0.94179 1.21720 0.92710 1.40241 1.03411 0.92017 1.24898 0.97754 0.95042 0.95675 1.69892 1.34964 1.40292 1.07371 0.86763 0.86410 0.78368 0.77129 1.21365 1.20334 1.20288 1.65757 1.52431 1.01209 1.03577 1.22913 0.99790 0.95869 0.90425 1.22398 1.00800 0.94029 0.97927 1.21982 0.94171 0.95933 0.98314 1.21711 0.97235 0.99336 1.00167 1.21981 0.82081 0.93769 1.00246 1.92786 1.52423 1.79515 1.94567 1.23061 1.00631 0.92941 0.91822 0.95623 0.94212 0.93158 0.94922 0.89614 0.92935 0.92419 0.91898 0.92267 0.91858 0.91264 0.92957 0.93337 0.91586 0.91305 0.91880 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.85 37.16 0.37 -2.52 16 2 C -0.11 -2.59 5.08 -26.73 -0.14 -2.72 16 3 C 0.20 5.03 1.88 -68.86 -0.13 4.90 16 4 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 5 C -0.54 -14.65 6.46 -34.44 -0.22 -14.88 16 6 H 0.06 1.71 5.69 -52.48 -0.30 1.41 16 7 C 0.07 1.90 5.30 -17.82 -0.09 1.81 16 8 N -0.89 -25.28 11.53 55.43 0.64 -24.64 16 9 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 N -0.51 -10.78 4.77 -223.40 -1.07 -11.84 16 14 C 0.04 0.76 5.10 -2.18 -0.01 0.75 16 15 C -0.11 -1.83 6.10 -25.35 -0.15 -1.99 16 16 C -0.10 -1.60 0.90 -153.13 -0.14 -1.73 16 17 C -0.13 -1.61 8.23 37.15 0.31 -1.31 16 18 C 0.07 1.06 6.30 37.16 0.23 1.29 16 19 F -0.21 -3.88 16.09 2.25 0.04 -3.85 16 20 C 0.04 0.86 5.28 -2.18 -0.01 0.85 16 21 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.05 1.00 7.59 -51.93 -0.39 0.60 16 24 H 0.03 0.77 6.72 -51.93 -0.35 0.42 16 25 H 0.09 2.29 6.23 -51.93 -0.32 1.97 16 26 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.06 1.30 6.24 -51.93 -0.32 0.98 16 28 H 0.06 1.21 7.57 -51.93 -0.39 0.82 16 29 H 0.06 0.92 7.51 -51.93 -0.39 0.53 16 30 H 0.06 0.92 7.71 -51.92 -0.40 0.52 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 36 H 0.06 1.20 7.86 -51.93 -0.41 0.79 16 37 H 0.07 1.57 5.01 -51.93 -0.26 1.31 16 LS Contribution 285.30 15.07 4.30 4.30 Total: -1.00 -28.24 285.30 -7.16 -35.40 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -6.06 Total: -0.49 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: 0.01 Total: -15.54 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: -0.43 Total: -36.48 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.04 Total: -3.85 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.24 -7.16 -35.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166737.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.712 kcal (2) G-P(sol) polarization free energy of solvation -28.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds