Wall clock time and date at job start Sun Mar 29 2020 21:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47395 * 2 1 4 4 H 1.09001 * 109.46676 * 56.02646 * 3 2 1 5 5 C 1.50696 * 109.47450 * 176.02705 * 3 2 1 6 6 H 1.08007 * 119.99750 * 116.98473 * 5 3 2 7 7 C 1.37875 * 120.00141 * 296.98063 * 5 3 2 8 8 N 1.31513 * 120.00236 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99971 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47065 * 180.02562 * 9 7 5 11 11 H 1.48500 * 109.47353 * 300.00161 * 9 7 5 12 12 H 1.48509 * 109.47075 * 60.00680 * 9 7 5 13 13 N 1.46907 * 109.46748 * 296.03219 * 3 2 1 14 14 C 1.48559 * 110.99648 * 300.76588 * 13 3 2 15 15 C 1.54377 * 104.59404 * 200.96343 * 14 13 3 16 16 C 1.54257 * 105.06194 * 23.85272 * 15 14 13 17 17 C 1.52990 * 110.32732 * 241.10450 * 16 15 14 18 18 C 1.53008 * 110.31879 * 118.89527 * 16 15 14 19 19 F 1.39901 * 109.47160 * 301.45556 * 18 16 15 20 20 C 1.48561 * 110.99520 * 185.35565 * 13 3 2 21 21 H 1.08998 * 109.46904 * 175.19901 * 1 2 3 22 22 H 1.08997 * 109.47027 * 295.19645 * 1 2 3 23 23 H 1.09000 * 109.47225 * 55.20303 * 1 2 3 24 24 H 1.09002 * 109.47516 * 239.99623 * 2 1 3 25 25 H 1.09003 * 109.47051 * 119.99716 * 2 1 3 26 26 H 0.96998 * 120.00828 * 179.97438 * 8 7 5 27 27 H 1.09000 * 110.41606 * 319.74776 * 14 13 3 28 28 H 1.09001 * 110.40803 * 82.18632 * 14 13 3 29 29 H 1.09002 * 110.32623 * 142.75366 * 15 14 13 30 30 H 1.09008 * 110.32183 * 264.96086 * 15 14 13 31 31 H 1.08995 * 109.47245 * 58.54704 * 17 16 15 32 32 H 1.09007 * 109.47206 * 178.54955 * 17 16 15 33 33 H 1.08998 * 109.47167 * 298.54370 * 17 16 15 34 34 H 1.08994 * 109.47231 * 61.46192 * 18 16 15 35 35 H 1.09008 * 109.46630 * 181.45940 * 18 16 15 36 36 H 1.09004 * 110.41178 * 277.81055 * 20 13 3 37 37 H 1.08994 * 110.41742 * 40.25804 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6197 1.9764 0.8523 5 6 3.5438 1.4436 0.0984 6 1 4.1374 1.8491 -0.7076 7 6 4.1618 0.9272 1.2175 8 7 3.4390 0.4331 2.1988 9 14 6.0258 0.9280 1.3391 10 1 6.4378 0.3217 2.6306 11 1 6.5954 0.1381 0.2180 12 1 6.5261 2.3243 1.2654 13 7 1.6302 2.1067 -1.2446 14 6 2.1704 1.3944 -2.4310 15 6 2.1395 2.4442 -3.5624 16 6 2.1693 3.8089 -2.8439 17 6 0.9062 4.6085 -3.1694 18 6 3.4172 4.5958 -3.2497 19 9 4.5601 3.8555 -2.9290 20 6 2.2158 3.4688 -1.3388 21 1 -0.3633 -1.0241 -0.0860 22 1 -0.3633 0.4375 0.9299 23 1 -0.3634 0.5865 -0.8439 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.8737 0.0694 2.9860 27 1 3.1930 1.0663 -2.2445 28 1 1.5376 0.5437 -2.6843 29 1 3.0138 2.3350 -4.2042 30 1 1.2249 2.3440 -4.1470 31 1 0.0277 4.0407 -2.8630 32 1 0.9296 5.5582 -2.6349 33 1 0.8615 4.7964 -4.2421 34 1 3.3952 4.7837 -4.3231 35 1 3.4375 5.5455 -2.7150 36 1 1.6172 4.1802 -0.7697 37 1 3.2455 3.4655 -0.9814 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166737.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:04 Heat of formation + Delta-G solvation = -79.169999 kcal Electronic energy + Delta-G solvation = -17434.398672 eV Core-core repulsion = 14738.624613 eV Total energy + Delta-G solvation = -2695.774059 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.51933 -40.23992 -36.68172 -34.01864 -32.56298 -30.52810 -28.29389 -27.39916 -26.22879 -24.43562 -22.97053 -20.85370 -19.87577 -18.46994 -17.30750 -16.80113 -16.63635 -16.26907 -15.85966 -15.24462 -14.71403 -14.65160 -14.35781 -13.98123 -13.57656 -13.40654 -13.17631 -13.00612 -12.83130 -12.45773 -12.43510 -12.22410 -12.13601 -11.78105 -11.70560 -11.51507 -11.45455 -11.29370 -11.11388 -10.90829 -10.43965 -9.02166 -8.05824 -6.24648 1.34976 1.35299 1.43422 2.38800 3.14267 3.46763 3.60595 3.75707 4.04168 4.18449 4.37644 4.40211 4.52564 4.55744 4.66914 4.71758 4.84809 4.87310 4.90604 5.00384 5.06587 5.19097 5.21703 5.27303 5.31763 5.38749 5.41371 5.46551 5.56256 5.62118 5.77197 6.00022 6.18527 6.36061 6.50119 6.96448 7.44416 8.91408 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.022722 B = 0.011461 C = 0.008448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.994602 B = 2442.458837 C = 3313.595622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.102 4.102 3 C 0.209 3.791 4 H 0.003 0.997 5 C -0.546 4.546 6 H 0.051 0.949 7 C 0.022 3.978 8 N -0.912 5.912 9 Si 0.941 3.059 10 H -0.281 1.281 11 H -0.276 1.276 12 H -0.277 1.277 13 N -0.502 5.502 14 C 0.037 3.963 15 C -0.106 4.106 16 C -0.096 4.096 17 C -0.120 4.120 18 C 0.066 3.934 19 F -0.239 7.239 20 C 0.040 3.960 21 H 0.048 0.952 22 H 0.033 0.967 23 H 0.059 0.941 24 H 0.031 0.969 25 H 0.054 0.946 26 H 0.261 0.739 27 H 0.022 0.978 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.819 6.883 -11.608 14.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.141 4.141 3 C 0.101 3.899 4 H 0.021 0.979 5 C -0.585 4.585 6 H 0.069 0.931 7 C -0.178 4.178 8 N -0.551 5.551 9 Si 0.767 3.233 10 H -0.206 1.206 11 H -0.201 1.201 12 H -0.202 1.202 13 N -0.225 5.225 14 C -0.091 4.091 15 C -0.144 4.144 16 C -0.097 4.097 17 C -0.177 4.177 18 C 0.011 3.989 19 F -0.221 7.221 20 C -0.089 4.089 21 H 0.067 0.933 22 H 0.052 0.948 23 H 0.078 0.922 24 H 0.049 0.951 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.041 0.959 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.108 0.892 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.122 0.878 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -4.378 6.783 -11.395 13.965 hybrid contribution 2.216 -0.405 0.868 2.414 sum -2.161 6.378 -10.527 12.497 Atomic orbital electron populations 1.21587 0.96006 1.00123 1.00732 1.21388 0.94724 0.98040 0.99936 1.19132 0.91723 0.91560 0.87523 0.97940 1.21916 0.94005 1.39559 1.02976 0.93139 1.25568 1.01557 0.95085 0.95602 1.70007 1.36301 1.41065 1.07734 0.85884 0.81934 0.78229 0.77248 1.20609 1.20150 1.20210 1.65672 1.52265 1.01989 1.02611 1.22913 0.97625 0.97323 0.91252 1.22385 1.02484 0.92825 0.96693 1.21973 0.96675 0.96458 0.94580 1.21662 0.94714 0.99042 1.02321 1.22310 0.80082 0.93632 1.02854 1.92735 1.54057 1.80314 1.94959 1.23082 0.98228 0.92092 0.95474 0.93328 0.94824 0.92168 0.95056 0.92732 0.92973 0.95940 0.91355 0.91526 0.89230 0.92299 0.91788 0.90290 0.87770 0.89617 0.91753 0.94881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.15 9.85 71.98 0.71 -4.44 16 2 C -0.10 -4.99 5.08 30.59 0.16 -4.84 16 3 C 0.21 10.73 1.88 44.17 0.08 10.81 16 4 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 5 C -0.55 -30.54 6.46 25.60 0.17 -30.37 16 6 H 0.05 2.90 5.69 -2.91 -0.02 2.88 16 7 C 0.02 1.23 5.30 84.65 0.45 1.68 16 8 N -0.91 -53.51 11.53 21.45 0.25 -53.27 16 9 Si 0.94 45.43 29.54 68.60 2.03 47.45 16 10 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 12 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 13 N -0.50 -21.49 4.77 -860.71 -4.11 -25.60 16 14 C 0.04 1.46 5.10 86.45 0.44 1.90 16 15 C -0.11 -3.15 6.10 31.49 0.19 -2.96 16 16 C -0.10 -2.74 0.90 -51.29 -0.05 -2.78 16 17 C -0.12 -2.57 8.23 71.98 0.59 -1.98 16 18 C 0.07 1.69 6.30 71.98 0.45 2.14 16 19 F -0.24 -8.56 16.09 44.97 0.72 -7.84 16 20 C 0.04 1.56 5.28 86.45 0.46 2.02 16 21 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 22 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.06 2.30 7.59 -2.39 -0.02 2.29 16 24 H 0.03 1.49 6.72 -2.39 -0.02 1.47 16 25 H 0.05 3.00 6.23 -2.39 -0.01 2.99 16 26 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 27 H 0.02 1.03 6.24 -2.39 -0.01 1.02 16 28 H 0.07 2.56 7.57 -2.39 -0.02 2.54 16 29 H 0.07 1.90 7.51 -2.39 -0.02 1.88 16 30 H 0.09 2.22 7.71 -2.38 -0.02 2.21 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 36 H 0.06 2.44 7.86 -2.38 -0.02 2.43 16 37 H 0.03 1.54 5.01 -2.39 -0.01 1.53 16 Total: -1.00 -63.12 285.30 3.57 -59.55 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: 1.03 Total: 8.53 kcal Atomic # 6 Polarization: -32.48 SS G_CDS: 3.65 Total: -28.83 kcal Atomic # 7 Polarization: -75.00 SS G_CDS: -3.86 Total: -78.86 kcal Atomic # 9 Polarization: -8.56 SS G_CDS: 0.72 Total: -7.84 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -63.12 3.57 -59.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166737.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.619 kcal (2) G-P(sol) polarization free energy of solvation -63.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds