Wall clock time and date at job start Sun Mar 29 2020 21:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47052 * 2 1 4 4 H 1.09006 * 109.46876 * 175.11172 * 3 2 1 5 5 C 1.50703 * 109.47167 * 55.11570 * 3 2 1 6 6 H 1.07995 * 119.99639 * 240.00149 * 5 3 2 7 7 C 1.37875 * 119.99980 * 59.99563 * 5 3 2 8 8 N 1.31518 * 120.00201 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00225 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47235 * 59.99868 * 9 7 5 11 11 H 1.48495 * 109.47571 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46971 * 300.00025 * 9 7 5 13 13 N 1.46902 * 109.47350 * 295.11570 * 3 2 1 14 14 C 1.47904 * 110.99921 * 321.91499 * 13 3 2 15 15 C 1.53991 * 107.05832 * 214.15782 * 14 13 3 16 16 H 1.09000 * 110.31002 * 120.14513 * 15 14 13 17 17 C 1.52998 * 110.30663 * 242.20866 * 15 14 13 18 18 C 1.54601 * 105.14029 * 1.22490 * 15 14 13 19 19 C 1.48533 * 110.99828 * 204.52351 * 13 3 2 20 20 H 1.08998 * 110.67229 * 41.28216 * 19 13 3 21 21 C 1.53001 * 110.66419 * 278.15484 * 19 13 3 22 22 F 1.39892 * 109.47492 * 60.00447 * 21 19 13 23 23 H 1.08994 * 109.47178 * 293.97831 * 1 2 3 24 24 H 1.09006 * 109.47005 * 53.98287 * 1 2 3 25 25 H 1.09004 * 109.47277 * 173.97380 * 1 2 3 26 26 H 1.08997 * 109.47394 * 120.00435 * 2 1 3 27 27 H 1.09003 * 109.46971 * 240.00439 * 2 1 3 28 28 H 0.96996 * 120.00450 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.91641 * 333.51114 * 14 13 3 30 30 H 1.08999 * 109.91471 * 94.80495 * 14 13 3 31 31 H 1.09002 * 109.46804 * 58.55172 * 17 15 14 32 32 H 1.09002 * 109.47045 * 178.54498 * 17 15 14 33 33 H 1.08990 * 109.47591 * 298.54724 * 17 15 14 34 34 H 1.08997 * 110.72022 * 140.31527 * 18 15 14 35 35 H 1.08993 * 110.72283 * 263.42203 * 18 15 14 36 36 H 1.09007 * 109.47215 * 180.02562 * 21 19 13 37 37 H 1.09000 * 109.47176 * 299.99448 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1265 1.4437 0.0876 5 6 1.4413 2.1870 1.1655 6 1 0.8314 3.0611 0.9920 7 6 1.6722 1.7520 2.4533 8 7 2.4153 0.6876 2.6647 9 14 0.9296 2.6743 3.8980 10 1 -0.5506 2.6721 3.7786 11 1 1.3253 2.0100 5.1657 12 1 1.4241 4.0746 3.8982 13 7 1.6490 2.1001 -1.2540 14 6 1.7485 1.1656 -2.3961 15 6 2.1837 1.9926 -3.6200 16 1 3.1301 1.6195 -4.0115 17 6 1.1054 1.9441 -4.7043 18 6 2.3529 3.4360 -3.0925 19 6 2.5634 3.2266 -1.5719 20 1 3.5975 2.9542 -1.3606 21 6 2.1644 4.4820 -0.7937 22 9 2.2294 4.2202 0.5790 23 1 -0.3633 0.4176 0.9389 24 1 -0.3633 0.6043 -0.8313 25 1 -0.3634 -1.0220 -0.1079 26 1 1.8934 -0.5139 0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 2.5774 0.3814 3.5706 29 1 2.4920 0.3974 -2.1835 30 1 0.7786 0.7053 -2.5848 31 1 0.1686 2.3302 -4.3025 32 1 1.4157 2.5541 -5.5527 33 1 0.9638 0.9137 -5.0301 34 1 3.2256 3.9106 -3.5410 35 1 1.4552 4.0239 -3.2831 36 1 2.8467 5.2953 -1.0414 37 1 1.1471 4.7675 -1.0615 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166899.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:48 Heat of formation + Delta-G solvation = -38.536360 kcal Electronic energy + Delta-G solvation = -17658.550305 eV Core-core repulsion = 14964.538252 eV Total energy + Delta-G solvation = -2694.012052 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -46.43691 -38.75310 -34.72146 -31.92069 -31.31151 -29.15854 -26.82595 -25.69683 -23.91363 -23.17194 -20.22434 -19.96888 -18.45233 -16.71920 -15.54780 -14.83758 -14.63465 -14.54955 -14.11302 -13.52533 -13.26131 -13.04215 -12.47504 -12.39069 -12.33731 -12.09077 -11.47056 -11.27393 -10.99394 -10.75289 -10.56873 -10.46261 -10.42408 -10.34310 -9.95290 -9.81392 -9.44734 -9.30665 -9.18171 -8.68221 -8.12288 -7.22414 -5.76201 -3.67767 3.47589 3.50413 3.55319 4.60018 4.84739 4.95880 5.08053 5.25712 5.52656 5.60941 5.68786 5.71169 5.75795 5.84290 5.94904 6.01578 6.19949 6.23549 6.31444 6.41086 6.47197 6.48939 6.64595 6.67840 6.80338 6.85486 7.09986 7.27020 7.44708 7.67112 7.77646 8.09216 8.18207 8.45131 8.70880 9.26884 9.86376 11.32375 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.031418 B = 0.010597 C = 0.008712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.991967 B = 2641.745783 C = 3213.047248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.120 4.120 3 C 0.207 3.793 4 H 0.001 0.999 5 C -0.456 4.456 6 H 0.076 0.924 7 C 0.048 3.952 8 N -0.908 5.908 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.279 1.279 13 N -0.499 5.499 14 C 0.040 3.960 15 C -0.106 4.106 16 H 0.065 0.935 17 C -0.137 4.137 18 C -0.112 4.112 19 C 0.039 3.961 20 H 0.051 0.949 21 C 0.081 3.919 22 F -0.177 7.177 23 H 0.058 0.942 24 H 0.042 0.958 25 H 0.013 0.987 26 H 0.090 0.910 27 H 0.017 0.983 28 H 0.255 0.745 29 H 0.040 0.960 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.518 3.600 -11.313 11.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.159 4.159 3 C 0.101 3.899 4 H 0.018 0.982 5 C -0.495 4.495 6 H 0.094 0.906 7 C -0.150 4.150 8 N -0.550 5.550 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.220 1.220 12 H -0.205 1.205 13 N -0.225 5.225 14 C -0.089 4.089 15 C -0.125 4.125 16 H 0.084 0.916 17 C -0.194 4.194 18 C -0.150 4.150 19 C -0.071 4.071 20 H 0.069 0.931 21 C 0.026 3.974 22 F -0.157 7.157 23 H 0.077 0.923 24 H 0.061 0.939 25 H 0.033 0.967 26 H 0.109 0.891 27 H 0.035 0.965 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.990 3.660 -11.027 11.661 hybrid contribution 0.594 0.048 0.868 1.053 sum -0.396 3.708 -10.159 10.822 Atomic orbital electron populations 1.21502 0.97214 0.97085 1.01931 1.21757 0.95444 0.98549 1.00119 1.19520 0.93873 0.90863 0.85628 0.98168 1.21312 1.28681 1.10511 0.89023 0.90644 1.24808 0.96271 0.95356 0.98575 1.69880 1.40286 1.24462 1.20379 0.86683 0.79368 0.80108 0.81988 1.20693 1.21955 1.20471 1.64926 1.47716 1.07119 1.02698 1.22956 1.00370 0.95281 0.90247 1.22023 0.98444 0.95896 0.96146 0.91646 1.21787 0.98850 1.01116 0.97674 1.22533 1.01278 0.96530 0.94683 1.23236 0.95996 0.94305 0.93540 0.93109 1.21645 1.01198 0.95607 0.78965 1.93077 1.97498 1.94622 1.30530 0.92294 0.93878 0.96747 0.89150 0.96474 0.93559 0.94159 0.91018 0.92251 0.93347 0.93020 0.92007 0.90907 0.93099 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.70 9.25 37.16 0.34 -2.35 16 2 C -0.12 -2.90 4.95 -26.73 -0.13 -3.03 16 3 C 0.21 5.18 1.73 -68.86 -0.12 5.06 16 4 H 0.00 0.02 7.57 -51.93 -0.39 -0.37 16 5 C -0.46 -12.42 4.55 -34.44 -0.16 -12.57 16 6 H 0.08 2.10 6.00 -52.49 -0.31 1.79 16 7 C 0.05 1.35 5.28 -17.82 -0.09 1.26 16 8 N -0.91 -26.58 11.37 55.43 0.63 -25.95 16 9 Si 0.89 22.46 29.54 -169.99 -5.02 17.44 16 10 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 12 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 13 N -0.50 -10.45 4.32 -216.10 -0.93 -11.38 16 14 C 0.04 0.71 4.67 -2.75 -0.01 0.70 16 15 C -0.11 -1.52 3.58 -89.26 -0.32 -1.84 16 16 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 17 C -0.14 -1.65 8.89 37.16 0.33 -1.32 16 18 C -0.11 -1.60 6.05 -24.87 -0.15 -1.75 16 19 C 0.04 0.71 2.79 -65.79 -0.18 0.53 16 20 H 0.05 1.01 7.67 -51.93 -0.40 0.61 16 21 C 0.08 1.48 7.12 37.16 0.26 1.74 16 22 F -0.18 -4.15 12.16 2.25 0.03 -4.12 16 23 H 0.06 1.45 7.30 -51.93 -0.38 1.07 16 24 H 0.04 0.92 6.48 -51.93 -0.34 0.59 16 25 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.09 2.45 6.22 -51.93 -0.32 2.13 16 27 H 0.02 0.37 5.74 -51.93 -0.30 0.07 16 28 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.04 0.77 6.22 -51.93 -0.32 0.44 16 30 H 0.07 1.28 6.70 -51.93 -0.35 0.93 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.99 7.75 -51.93 -0.40 0.59 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.06 1.10 8.11 -51.93 -0.42 0.68 16 LS Contribution 278.62 15.07 4.20 4.20 Total: -1.00 -29.29 278.62 -7.36 -36.65 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -6.03 Total: -3.27 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -0.23 Total: -13.57 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: -0.30 Total: -37.33 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.03 Total: -4.12 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.29 -7.36 -36.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166899.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.884 kcal (2) G-P(sol) polarization free energy of solvation -29.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds