Wall clock time and date at job start Sun Mar 29 2020 21:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47052 * 2 1 4 4 H 1.09006 * 109.46876 * 175.11172 * 3 2 1 5 5 C 1.50703 * 109.47167 * 55.11570 * 3 2 1 6 6 H 1.07995 * 119.99639 * 240.00149 * 5 3 2 7 7 C 1.37875 * 119.99980 * 59.99563 * 5 3 2 8 8 N 1.31518 * 120.00201 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00225 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47235 * 59.99868 * 9 7 5 11 11 H 1.48495 * 109.47571 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46971 * 300.00025 * 9 7 5 13 13 N 1.46902 * 109.47350 * 295.11570 * 3 2 1 14 14 C 1.47904 * 110.99921 * 321.91499 * 13 3 2 15 15 C 1.53991 * 107.05832 * 214.15782 * 14 13 3 16 16 H 1.09000 * 110.31002 * 120.14513 * 15 14 13 17 17 C 1.52998 * 110.30663 * 242.20866 * 15 14 13 18 18 C 1.54601 * 105.14029 * 1.22490 * 15 14 13 19 19 C 1.48533 * 110.99828 * 204.52351 * 13 3 2 20 20 H 1.08998 * 110.67229 * 41.28216 * 19 13 3 21 21 C 1.53001 * 110.66419 * 278.15484 * 19 13 3 22 22 F 1.39892 * 109.47492 * 60.00447 * 21 19 13 23 23 H 1.08994 * 109.47178 * 293.97831 * 1 2 3 24 24 H 1.09006 * 109.47005 * 53.98287 * 1 2 3 25 25 H 1.09004 * 109.47277 * 173.97380 * 1 2 3 26 26 H 1.08997 * 109.47394 * 120.00435 * 2 1 3 27 27 H 1.09003 * 109.46971 * 240.00439 * 2 1 3 28 28 H 0.96996 * 120.00450 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.91641 * 333.51114 * 14 13 3 30 30 H 1.08999 * 109.91471 * 94.80495 * 14 13 3 31 31 H 1.09002 * 109.46804 * 58.55172 * 17 15 14 32 32 H 1.09002 * 109.47045 * 178.54498 * 17 15 14 33 33 H 1.08990 * 109.47591 * 298.54724 * 17 15 14 34 34 H 1.08997 * 110.72022 * 140.31527 * 18 15 14 35 35 H 1.08993 * 110.72283 * 263.42203 * 18 15 14 36 36 H 1.09007 * 109.47215 * 180.02562 * 21 19 13 37 37 H 1.09000 * 109.47176 * 299.99448 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1265 1.4437 0.0876 5 6 1.4413 2.1870 1.1655 6 1 0.8314 3.0611 0.9920 7 6 1.6722 1.7520 2.4533 8 7 2.4153 0.6876 2.6647 9 14 0.9296 2.6743 3.8980 10 1 -0.5506 2.6721 3.7786 11 1 1.3253 2.0100 5.1657 12 1 1.4241 4.0746 3.8982 13 7 1.6490 2.1001 -1.2540 14 6 1.7485 1.1656 -2.3961 15 6 2.1837 1.9926 -3.6200 16 1 3.1301 1.6195 -4.0115 17 6 1.1054 1.9441 -4.7043 18 6 2.3529 3.4360 -3.0925 19 6 2.5634 3.2266 -1.5719 20 1 3.5975 2.9542 -1.3606 21 6 2.1644 4.4820 -0.7937 22 9 2.2294 4.2202 0.5790 23 1 -0.3633 0.4176 0.9389 24 1 -0.3633 0.6043 -0.8313 25 1 -0.3634 -1.0220 -0.1079 26 1 1.8934 -0.5139 0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 2.5774 0.3814 3.5706 29 1 2.4920 0.3974 -2.1835 30 1 0.7786 0.7053 -2.5848 31 1 0.1686 2.3302 -4.3025 32 1 1.4157 2.5541 -5.5527 33 1 0.9638 0.9137 -5.0301 34 1 3.2256 3.9106 -3.5410 35 1 1.4552 4.0239 -3.2831 36 1 2.8467 5.2953 -1.0414 37 1 1.1471 4.7675 -1.0615 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166899.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:48 Heat of formation + Delta-G solvation = -56.458995 kcal Electronic energy + Delta-G solvation = -17659.327488 eV Core-core repulsion = 14964.538252 eV Total energy + Delta-G solvation = -2694.789236 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.12200 -40.24724 -36.48038 -33.62004 -32.98140 -30.78608 -28.59217 -27.02499 -25.54364 -25.01934 -21.82775 -21.31925 -20.11682 -18.58683 -17.29069 -16.49955 -16.22802 -16.09549 -15.96308 -15.19457 -14.81822 -14.50835 -14.10958 -13.97990 -13.91472 -13.64308 -12.98171 -12.83126 -12.75579 -12.52453 -12.30581 -12.27751 -11.88564 -11.55090 -11.46012 -11.33571 -11.25982 -11.12738 -10.96199 -10.70441 -10.27022 -8.96946 -7.91922 -5.87530 1.43053 1.45303 1.51661 2.54048 3.33363 3.38779 3.70023 3.84260 4.07008 4.23017 4.32955 4.38146 4.56899 4.61562 4.65346 4.72227 4.75569 4.78307 4.89821 5.00615 5.04993 5.17364 5.19344 5.24412 5.27039 5.41728 5.44257 5.49425 5.57646 5.78233 5.83771 5.96945 6.40356 6.45390 6.74362 7.11151 7.68784 9.15299 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.031418 B = 0.010597 C = 0.008712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.991967 B = 2641.745783 C = 3213.047248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.116 4.116 3 C 0.216 3.784 4 H -0.046 1.046 5 C -0.446 4.446 6 H 0.069 0.931 7 C -0.003 4.003 8 N -0.937 5.937 9 Si 0.939 3.061 10 H -0.274 1.274 11 H -0.293 1.293 12 H -0.279 1.279 13 N -0.507 5.507 14 C 0.036 3.964 15 C -0.101 4.101 16 H 0.076 0.924 17 C -0.131 4.131 18 C -0.099 4.099 19 C 0.030 3.970 20 H 0.028 0.972 21 C 0.071 3.929 22 F -0.212 7.212 23 H 0.031 0.969 24 H 0.053 0.947 25 H 0.037 0.963 26 H 0.056 0.944 27 H 0.035 0.965 28 H 0.251 0.749 29 H 0.023 0.977 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.372 4.678 -13.557 14.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.155 4.155 3 C 0.108 3.892 4 H -0.028 1.028 5 C -0.485 4.485 6 H 0.087 0.913 7 C -0.197 4.197 8 N -0.581 5.581 9 Si 0.768 3.232 10 H -0.199 1.199 11 H -0.219 1.219 12 H -0.205 1.205 13 N -0.232 5.232 14 C -0.092 4.092 15 C -0.120 4.120 16 H 0.094 0.906 17 C -0.188 4.188 18 C -0.136 4.136 19 C -0.079 4.079 20 H 0.046 0.954 21 C 0.016 3.984 22 F -0.193 7.193 23 H 0.050 0.950 24 H 0.072 0.928 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.041 0.959 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.857 4.752 -13.291 14.236 hybrid contribution 0.898 -0.264 1.485 1.755 sum -0.959 4.488 -11.806 12.666 Atomic orbital electron populations 1.21344 0.95640 0.98593 1.00794 1.21629 0.96692 0.97825 0.99304 1.19236 0.90826 0.91645 0.87445 1.02823 1.21482 1.27466 1.09772 0.89798 0.91289 1.25459 0.97135 0.96232 1.00904 1.70026 1.41868 1.25842 1.20325 0.85875 0.78990 0.78863 0.79515 1.19903 1.21948 1.20525 1.64820 1.48236 1.08069 1.02075 1.23034 1.00126 0.95102 0.90928 1.22020 0.99801 0.95059 0.95090 0.90594 1.21736 0.97564 1.02121 0.97381 1.22520 1.03228 0.96917 0.90976 1.23373 0.94214 0.93440 0.96872 0.95400 1.22021 1.03115 0.96654 0.76629 1.92972 1.97700 1.95003 1.33642 0.95006 0.92788 0.94350 0.92538 0.94680 0.94037 0.95910 0.90707 0.92769 0.91028 0.92365 0.89224 0.89460 0.89302 0.90387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.73 9.25 71.98 0.67 -4.06 16 2 C -0.12 -5.69 4.95 30.59 0.15 -5.53 16 3 C 0.22 11.06 1.73 44.17 0.08 11.14 16 4 H -0.05 -2.72 7.57 -2.38 -0.02 -2.74 16 5 C -0.45 -24.78 4.55 25.60 0.12 -24.67 16 6 H 0.07 3.88 6.00 -2.91 -0.02 3.87 16 7 C 0.00 -0.15 5.28 84.65 0.45 0.30 16 8 N -0.94 -56.77 11.37 21.45 0.24 -56.53 16 9 Si 0.94 46.87 29.54 68.60 2.03 48.90 16 10 H -0.27 -13.20 7.11 99.48 0.71 -12.49 16 11 H -0.29 -14.51 7.11 99.48 0.71 -13.81 16 12 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 13 N -0.51 -20.97 4.32 -837.60 -3.62 -24.59 16 14 C 0.04 1.24 4.67 86.44 0.40 1.65 16 15 C -0.10 -2.56 3.58 -9.91 -0.04 -2.60 16 16 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 17 C -0.13 -2.61 8.89 71.98 0.64 -1.97 16 18 C -0.10 -2.46 6.05 31.80 0.19 -2.27 16 19 C 0.03 1.08 2.79 45.26 0.13 1.21 16 20 H 0.03 1.12 7.67 -2.39 -0.02 1.10 16 21 C 0.07 2.47 7.12 71.98 0.51 2.98 16 22 F -0.21 -10.02 12.16 44.97 0.55 -9.47 16 23 H 0.03 1.55 7.30 -2.39 -0.02 1.54 16 24 H 0.05 2.25 6.48 -2.38 -0.02 2.23 16 25 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 26 H 0.06 3.17 6.22 -2.39 -0.01 3.15 16 27 H 0.03 1.56 5.74 -2.39 -0.01 1.54 16 28 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 29 H 0.02 0.86 6.22 -2.39 -0.01 0.84 16 30 H 0.07 2.51 6.70 -2.39 -0.02 2.50 16 31 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.09 1.98 7.75 -2.39 -0.02 1.96 16 36 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 37 H 0.08 2.49 8.11 -2.39 -0.02 2.47 16 Total: -1.00 -65.30 278.62 3.53 -61.78 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: 1.03 Total: 3.74 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: 3.30 Total: -23.83 kcal Atomic # 7 Polarization: -77.74 SS G_CDS: -3.37 Total: -81.12 kcal Atomic # 9 Polarization: -10.02 SS G_CDS: 0.55 Total: -9.47 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -65.30 3.53 -61.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166899.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.320 kcal (2) G-P(sol) polarization free energy of solvation -65.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds