Wall clock time and date at job start Sun Mar 29 2020 21:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47455 * 2 1 4 4 H 1.08994 * 109.46886 * 50.20628 * 3 2 1 5 5 C 1.50689 * 109.47337 * 170.21352 * 3 2 1 6 6 H 1.07996 * 120.00542 * 114.61041 * 5 3 2 7 7 C 1.37883 * 119.99786 * 294.60850 * 5 3 2 8 8 N 1.31506 * 120.00077 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99909 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47066 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46720 * 120.00448 * 9 7 5 12 12 H 1.48499 * 109.47181 * 240.00298 * 9 7 5 13 13 N 1.46905 * 109.47036 * 290.21087 * 3 2 1 14 14 C 1.47846 * 110.99700 * 54.35081 * 13 3 2 15 15 C 1.55382 * 104.83500 * 146.36910 * 14 13 3 16 16 H 1.08998 * 111.01213 * 80.93912 * 15 14 13 17 17 C 1.53003 * 111.17196 * 204.89929 * 15 14 13 18 18 C 1.55140 * 101.44059 * 322.95181 * 15 14 13 19 19 C 1.47436 * 110.99876 * 175.19050 * 13 3 2 20 20 H 1.09007 * 109.88264 * 117.33870 * 19 13 3 21 21 C 1.52999 * 109.89185 * 356.15126 * 19 13 3 22 22 F 1.39901 * 109.47071 * 76.56410 * 21 19 13 23 23 H 1.08997 * 109.46607 * 321.91680 * 1 2 3 24 24 H 1.09005 * 109.47210 * 81.90963 * 1 2 3 25 25 H 1.08998 * 109.46893 * 201.91109 * 1 2 3 26 26 H 1.09008 * 109.46837 * 239.99926 * 2 1 3 27 27 H 1.08993 * 109.47317 * 120.00180 * 2 1 3 28 28 H 0.97000 * 120.00604 * 179.97438 * 8 7 5 29 29 H 1.09006 * 110.37471 * 265.18897 * 14 13 3 30 30 H 1.08993 * 110.37766 * 27.42269 * 14 13 3 31 31 H 1.08994 * 109.47004 * 172.11144 * 17 15 14 32 32 H 1.08998 * 109.47194 * 292.11397 * 17 15 14 33 33 H 1.09004 * 109.47068 * 52.11206 * 17 15 14 34 34 H 1.08994 * 110.71088 * 277.17935 * 18 15 14 35 35 H 1.08995 * 110.70230 * 154.11289 * 18 15 14 36 36 H 1.08997 * 109.47284 * 196.56470 * 21 19 13 37 37 H 1.08999 * 109.47039 * 316.57024 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5411 2.0042 0.7896 5 6 3.5275 1.4493 0.2415 6 1 4.1986 1.7925 -0.5319 7 6 4.0317 1.0176 1.4500 8 7 3.2146 0.5993 2.3917 9 14 5.8756 1.0254 1.7492 10 1 6.5709 1.5377 0.5411 11 1 6.1854 1.9019 2.9072 12 1 6.3363 -0.3567 2.0372 13 7 1.7522 2.0637 -1.2998 14 6 0.3159 1.9544 -1.6326 15 6 -0.0099 3.2535 -2.4204 16 1 0.2949 3.1651 -3.4631 17 6 -1.4948 3.6067 -2.3138 18 6 0.8640 4.2944 -1.6722 19 6 2.1266 3.4897 -1.2983 20 1 2.9112 3.6678 -2.0339 21 6 2.6115 3.8992 0.0938 22 9 3.9120 3.4236 0.2933 23 1 -0.3632 0.8089 0.6339 24 1 -0.3634 0.1446 -1.0175 25 1 -0.3633 -0.9534 0.3835 26 1 1.8933 -0.5139 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 3.5692 0.2952 3.2418 29 1 0.1363 1.0782 -2.2557 30 1 -0.2816 1.9009 -0.7226 31 1 -1.6671 4.5888 -2.7539 32 1 -2.0848 2.8611 -2.8467 33 1 -1.7903 3.6218 -1.2646 34 1 0.3558 4.6520 -0.7768 35 1 1.1179 5.1270 -2.3282 36 1 2.6056 4.9861 0.1755 37 1 1.9496 3.4744 0.8486 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166900.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:50 Heat of formation + Delta-G solvation = -0.342394 kcal Electronic energy + Delta-G solvation = -17858.205281 eV Core-core repulsion = 15165.849443 eV Total energy + Delta-G solvation = -2692.355838 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -46.44986 -38.99366 -34.58212 -31.99947 -31.77305 -28.87615 -27.59099 -25.62274 -23.88658 -22.86481 -20.57213 -19.75904 -18.62696 -16.34497 -16.13791 -15.16986 -14.77063 -14.45241 -13.95577 -13.60773 -13.27329 -12.79895 -12.62787 -12.44266 -12.00890 -11.76744 -11.73616 -11.49263 -11.08332 -10.89933 -10.70221 -10.44008 -10.37021 -10.21911 -10.01311 -9.80476 -9.51013 -9.27108 -9.18412 -8.73051 -7.96044 -7.07859 -5.77941 -3.53649 3.45233 3.52576 3.59483 4.62643 4.81663 4.98252 5.09068 5.28992 5.53258 5.54702 5.70992 5.76200 5.84219 5.88635 6.02730 6.03192 6.11777 6.18466 6.21714 6.29096 6.31701 6.46013 6.49432 6.60951 6.73850 6.91791 6.96631 7.14878 7.20719 7.49875 7.68962 8.04318 8.18552 8.39083 8.58211 9.18004 9.82209 11.31914 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.033629 B = 0.010805 C = 0.008826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.423149 B = 2590.709453 C = 3171.513182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.111 4.111 3 C 0.199 3.801 4 H 0.012 0.988 5 C -0.446 4.446 6 H 0.071 0.929 7 C 0.040 3.960 8 N -0.911 5.911 9 Si 0.891 3.109 10 H -0.275 1.275 11 H -0.290 1.290 12 H -0.292 1.292 13 N -0.519 5.519 14 C 0.038 3.962 15 C -0.109 4.109 16 H 0.076 0.924 17 C -0.138 4.138 18 C -0.132 4.132 19 C 0.055 3.945 20 H 0.078 0.922 21 C 0.059 3.941 22 F -0.173 7.173 23 H 0.042 0.958 24 H 0.052 0.948 25 H 0.030 0.970 26 H 0.041 0.959 27 H 0.089 0.911 28 H 0.254 0.746 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.040 0.960 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.169 5.751 -6.590 11.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.149 4.149 3 C 0.093 3.907 4 H 0.029 0.971 5 C -0.485 4.485 6 H 0.089 0.911 7 C -0.157 4.157 8 N -0.555 5.555 9 Si 0.721 3.279 10 H -0.200 1.200 11 H -0.217 1.217 12 H -0.219 1.219 13 N -0.244 5.244 14 C -0.090 4.090 15 C -0.128 4.128 16 H 0.095 0.905 17 C -0.196 4.196 18 C -0.171 4.171 19 C -0.054 4.054 20 H 0.096 0.904 21 C 0.003 3.997 22 F -0.154 7.154 23 H 0.061 0.939 24 H 0.071 0.929 25 H 0.049 0.951 26 H 0.060 0.940 27 H 0.108 0.892 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.801 5.398 -6.772 11.012 hybrid contribution 0.609 0.383 0.966 1.205 sum -6.192 5.781 -5.806 10.270 Atomic orbital electron populations 1.22463 0.99629 0.99408 1.00245 1.21546 0.91481 0.99707 1.02201 1.19732 0.96516 0.91001 0.83481 0.97096 1.21376 0.90846 1.36857 0.99432 0.91057 1.24643 0.97109 0.97606 0.96348 1.69905 1.33460 1.46642 1.05459 0.86503 0.86754 0.76749 0.77887 1.19996 1.21724 1.21878 1.63878 1.14558 1.11180 1.34824 1.23791 0.91036 0.95839 0.98338 1.22446 0.94424 0.96080 0.99824 0.90544 1.21690 0.95574 1.00734 1.01610 1.22855 0.96423 0.97906 0.99904 1.22846 0.96636 0.89367 0.96580 0.90362 1.22115 0.83350 0.95885 0.98348 1.93013 1.38257 1.88075 1.96042 0.93881 0.92886 0.95103 0.94002 0.89215 0.93658 0.91094 0.92612 0.93033 0.92785 0.92803 0.91723 0.91597 0.94177 0.90362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 8.23 37.16 0.31 -2.82 16 2 C -0.11 -2.61 5.32 -26.73 -0.14 -2.76 16 3 C 0.20 4.82 1.01 -68.87 -0.07 4.75 16 4 H 0.01 0.31 5.60 -51.93 -0.29 0.02 16 5 C -0.45 -12.08 4.58 -34.44 -0.16 -12.24 16 6 H 0.07 2.02 6.56 -52.49 -0.34 1.68 16 7 C 0.04 1.12 4.96 -17.82 -0.09 1.03 16 8 N -0.91 -26.39 11.73 55.43 0.65 -25.74 16 9 Si 0.89 22.68 29.20 -169.99 -4.96 17.71 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 12 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 13 N -0.52 -10.89 5.02 -216.51 -1.09 -11.98 16 14 C 0.04 0.65 4.02 -2.04 -0.01 0.65 16 15 C -0.11 -1.56 3.65 -88.22 -0.32 -1.88 16 16 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 17 C -0.14 -1.62 9.32 37.16 0.35 -1.28 16 18 C -0.13 -1.96 5.88 -24.91 -0.15 -2.11 16 19 C 0.05 1.03 3.52 -66.73 -0.23 0.80 16 20 H 0.08 1.51 8.14 -51.92 -0.42 1.08 16 21 C 0.06 1.20 6.00 37.16 0.22 1.42 16 22 F -0.17 -4.23 11.47 2.25 0.03 -4.21 16 23 H 0.04 0.85 6.78 -51.93 -0.35 0.49 16 24 H 0.05 0.92 4.89 -51.93 -0.25 0.67 16 25 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.04 0.99 8.14 -51.92 -0.42 0.56 16 27 H 0.09 2.39 6.35 -51.93 -0.33 2.06 16 28 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 29 H 0.07 1.22 6.77 -51.93 -0.35 0.87 16 30 H 0.06 1.00 4.88 -51.93 -0.25 0.75 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.64 8.09 -51.93 -0.42 0.22 16 34 H 0.06 0.93 7.75 -51.93 -0.40 0.53 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 37 H 0.08 1.75 5.56 -51.93 -0.29 1.46 16 LS Contribution 271.82 15.07 4.10 4.10 Total: -1.00 -28.83 271.82 -7.37 -36.20 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -5.80 Total: -1.64 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -0.29 Total: -14.44 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: -0.44 Total: -37.72 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.03 Total: -4.21 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.96 Total: 17.71 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.83 -7.37 -36.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166900.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.859 kcal (2) G-P(sol) polarization free energy of solvation -28.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds