Wall clock time and date at job start Sun Mar 29 2020 21:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47455 * 2 1 4 4 H 1.08994 * 109.46886 * 50.20628 * 3 2 1 5 5 C 1.50689 * 109.47337 * 170.21352 * 3 2 1 6 6 H 1.07996 * 120.00542 * 114.61041 * 5 3 2 7 7 C 1.37883 * 119.99786 * 294.60850 * 5 3 2 8 8 N 1.31506 * 120.00077 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99909 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47066 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46720 * 120.00448 * 9 7 5 12 12 H 1.48499 * 109.47181 * 240.00298 * 9 7 5 13 13 N 1.46905 * 109.47036 * 290.21087 * 3 2 1 14 14 C 1.47846 * 110.99700 * 54.35081 * 13 3 2 15 15 C 1.55382 * 104.83500 * 146.36910 * 14 13 3 16 16 H 1.08998 * 111.01213 * 80.93912 * 15 14 13 17 17 C 1.53003 * 111.17196 * 204.89929 * 15 14 13 18 18 C 1.55140 * 101.44059 * 322.95181 * 15 14 13 19 19 C 1.47436 * 110.99876 * 175.19050 * 13 3 2 20 20 H 1.09007 * 109.88264 * 117.33870 * 19 13 3 21 21 C 1.52999 * 109.89185 * 356.15126 * 19 13 3 22 22 F 1.39901 * 109.47071 * 76.56410 * 21 19 13 23 23 H 1.08997 * 109.46607 * 321.91680 * 1 2 3 24 24 H 1.09005 * 109.47210 * 81.90963 * 1 2 3 25 25 H 1.08998 * 109.46893 * 201.91109 * 1 2 3 26 26 H 1.09008 * 109.46837 * 239.99926 * 2 1 3 27 27 H 1.08993 * 109.47317 * 120.00180 * 2 1 3 28 28 H 0.97000 * 120.00604 * 179.97438 * 8 7 5 29 29 H 1.09006 * 110.37471 * 265.18897 * 14 13 3 30 30 H 1.08993 * 110.37766 * 27.42269 * 14 13 3 31 31 H 1.08994 * 109.47004 * 172.11144 * 17 15 14 32 32 H 1.08998 * 109.47194 * 292.11397 * 17 15 14 33 33 H 1.09004 * 109.47068 * 52.11206 * 17 15 14 34 34 H 1.08994 * 110.71088 * 277.17935 * 18 15 14 35 35 H 1.08995 * 110.70230 * 154.11289 * 18 15 14 36 36 H 1.08997 * 109.47284 * 196.56470 * 21 19 13 37 37 H 1.08999 * 109.47039 * 316.57024 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5411 2.0042 0.7896 5 6 3.5275 1.4493 0.2415 6 1 4.1986 1.7925 -0.5319 7 6 4.0317 1.0176 1.4500 8 7 3.2146 0.5993 2.3917 9 14 5.8756 1.0254 1.7492 10 1 6.5709 1.5377 0.5411 11 1 6.1854 1.9019 2.9072 12 1 6.3363 -0.3567 2.0372 13 7 1.7522 2.0637 -1.2998 14 6 0.3159 1.9544 -1.6326 15 6 -0.0099 3.2535 -2.4204 16 1 0.2949 3.1651 -3.4631 17 6 -1.4948 3.6067 -2.3138 18 6 0.8640 4.2944 -1.6722 19 6 2.1266 3.4897 -1.2983 20 1 2.9112 3.6678 -2.0339 21 6 2.6115 3.8992 0.0938 22 9 3.9120 3.4236 0.2933 23 1 -0.3632 0.8089 0.6339 24 1 -0.3634 0.1446 -1.0175 25 1 -0.3633 -0.9534 0.3835 26 1 1.8933 -0.5139 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 3.5692 0.2952 3.2418 29 1 0.1363 1.0782 -2.2557 30 1 -0.2816 1.9009 -0.7226 31 1 -1.6671 4.5888 -2.7539 32 1 -2.0848 2.8611 -2.8467 33 1 -1.7903 3.6218 -1.2646 34 1 0.3558 4.6520 -0.7768 35 1 1.1179 5.1270 -2.3282 36 1 2.6056 4.9861 0.1755 37 1 1.9496 3.4744 0.8486 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166900.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:50 Heat of formation + Delta-G solvation = -18.460352 kcal Electronic energy + Delta-G solvation = -17858.990934 eV Core-core repulsion = 15165.849443 eV Total energy + Delta-G solvation = -2693.141491 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.27805 -40.49749 -36.25190 -33.75596 -33.40037 -30.43898 -29.25979 -27.07735 -25.60529 -24.51758 -22.20824 -21.06188 -20.34553 -18.25602 -17.79644 -16.97925 -16.33917 -16.08172 -15.84429 -15.30235 -14.84741 -14.19762 -14.04173 -13.80046 -13.56635 -13.46716 -13.18519 -13.15458 -12.82796 -12.55776 -12.53077 -12.24216 -11.78374 -11.61723 -11.53646 -11.48662 -11.32113 -11.07126 -10.78763 -10.68779 -10.07133 -8.76387 -7.92989 -5.70602 1.39325 1.42608 1.53430 2.55729 3.34516 3.36417 3.77175 3.81108 3.91064 4.26426 4.31418 4.36077 4.53368 4.57223 4.62066 4.70136 4.74083 4.77640 4.89146 4.93149 5.03973 5.12278 5.15040 5.23419 5.30251 5.37602 5.38434 5.48451 5.57764 5.63051 5.80257 5.90450 6.37189 6.46654 6.74345 7.04583 7.65972 9.15837 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.033629 B = 0.010805 C = 0.008826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.423149 B = 2590.709453 C = 3171.513182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C 0.208 3.792 4 H -0.013 1.013 5 C -0.436 4.436 6 H 0.055 0.945 7 C -0.006 4.006 8 N -0.937 5.937 9 Si 0.935 3.065 10 H -0.275 1.275 11 H -0.291 1.291 12 H -0.290 1.290 13 N -0.536 5.536 14 C 0.033 3.967 15 C -0.099 4.099 16 H 0.084 0.916 17 C -0.133 4.133 18 C -0.123 4.123 19 C 0.051 3.949 20 H 0.074 0.926 21 C 0.053 3.947 22 F -0.200 7.200 23 H 0.038 0.962 24 H 0.078 0.922 25 H 0.041 0.959 26 H 0.035 0.965 27 H 0.054 0.946 28 H 0.250 0.750 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.524 6.953 -8.200 13.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C 0.101 3.899 4 H 0.005 0.995 5 C -0.475 4.475 6 H 0.073 0.927 7 C -0.199 4.199 8 N -0.582 5.582 9 Si 0.764 3.236 10 H -0.200 1.200 11 H -0.218 1.218 12 H -0.217 1.217 13 N -0.261 5.261 14 C -0.094 4.094 15 C -0.118 4.118 16 H 0.103 0.897 17 C -0.191 4.191 18 C -0.161 4.161 19 C -0.058 4.058 20 H 0.092 0.908 21 C -0.003 4.003 22 F -0.180 7.180 23 H 0.057 0.943 24 H 0.097 0.903 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.158 6.609 -8.400 13.446 hybrid contribution 1.032 0.047 1.411 1.749 sum -7.127 6.656 -6.989 11.997 Atomic orbital electron populations 1.22318 0.96286 0.99913 1.01872 1.21394 0.94516 0.98756 1.00034 1.19438 0.94507 0.91339 0.84569 0.99540 1.21508 0.92389 1.35021 0.98598 0.92672 1.25167 0.99829 0.98310 0.96633 1.70008 1.34432 1.48136 1.05639 0.85811 0.83687 0.76593 0.77493 1.20002 1.21807 1.21653 1.63732 1.17288 1.12713 1.32375 1.23840 0.88751 0.98116 0.98698 1.22421 0.96210 0.93670 0.99468 0.89731 1.21655 0.93412 1.02219 1.01784 1.22828 0.94232 0.98251 1.00790 1.22904 0.98574 0.88968 0.95318 0.90813 1.22311 0.81325 0.97930 0.98708 1.92917 1.40094 1.88762 1.96272 0.94338 0.90318 0.93957 0.94662 0.92767 0.94059 0.90743 0.93084 0.91045 0.91642 0.93227 0.91177 0.88826 0.90358 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.59 8.23 71.98 0.59 -4.99 16 2 C -0.11 -5.17 5.32 30.60 0.16 -5.01 16 3 C 0.21 10.25 1.01 44.17 0.04 10.30 16 4 H -0.01 -0.68 5.60 -2.39 -0.01 -0.69 16 5 C -0.44 -24.12 4.58 25.60 0.12 -24.00 16 6 H 0.06 3.19 6.56 -2.91 -0.02 3.17 16 7 C -0.01 -0.32 4.96 84.66 0.42 0.10 16 8 N -0.94 -55.83 11.73 21.45 0.25 -55.58 16 9 Si 0.93 47.40 29.20 68.60 2.00 49.40 16 10 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 11 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 12 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 13 N -0.54 -22.07 5.02 -838.90 -4.21 -26.28 16 14 C 0.03 1.08 4.02 86.94 0.35 1.43 16 15 C -0.10 -2.47 3.65 -9.24 -0.03 -2.50 16 16 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 17 C -0.13 -2.57 9.32 71.98 0.67 -1.89 16 18 C -0.12 -3.23 5.88 31.78 0.19 -3.04 16 19 C 0.05 1.86 3.52 45.26 0.16 2.02 16 20 H 0.07 2.74 8.14 -2.38 -0.02 2.72 16 21 C 0.05 2.12 6.00 71.98 0.43 2.55 16 22 F -0.20 -9.86 11.47 44.97 0.52 -9.34 16 23 H 0.04 1.48 6.78 -2.39 -0.02 1.47 16 24 H 0.08 2.57 4.89 -2.38 -0.01 2.56 16 25 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.03 1.67 8.14 -2.38 -0.02 1.65 16 27 H 0.05 2.97 6.35 -2.39 -0.02 2.96 16 28 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 29 H 0.07 2.37 6.77 -2.38 -0.02 2.36 16 30 H 0.05 1.74 4.88 -2.39 -0.01 1.73 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.05 1.01 8.09 -2.38 -0.02 0.99 16 34 H 0.07 1.79 7.75 -2.39 -0.02 1.77 16 35 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.08 2.53 8.08 -2.39 -0.02 2.51 16 37 H 0.05 2.43 5.56 -2.39 -0.01 2.42 16 Total: -1.00 -63.39 271.82 2.70 -60.69 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: 1.04 Total: 6.17 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: 3.10 Total: -25.05 kcal Atomic # 7 Polarization: -77.91 SS G_CDS: -3.96 Total: -81.87 kcal Atomic # 9 Polarization: -9.86 SS G_CDS: 0.52 Total: -9.34 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.00 Total: 49.40 kcal Total: -63.39 2.70 -60.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166900.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.225 kcal (2) G-P(sol) polarization free energy of solvation -63.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds