Wall clock time and date at job start Sun Mar 29 2020 21:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86798 * 119.99874 * 2 1 4 4 H 1.48503 * 109.46975 * 269.99916 * 3 2 1 5 5 H 1.48496 * 109.47278 * 29.99747 * 3 2 1 6 6 H 1.48502 * 109.47189 * 149.99424 * 3 2 1 7 7 C 1.38950 * 120.00018 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99898 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99921 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99658 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00168 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99847 * 180.02562 * 10 9 7 13 13 N 1.46494 * 109.46953 * 180.02562 * 12 10 9 14 14 C 1.34408 * 126.81573 * 124.99914 * 13 12 10 15 15 N 1.30851 * 108.10036 * 179.97438 * 14 13 12 16 16 C 1.33312 * 109.81907 * 359.97438 * 15 14 13 17 17 Cl 1.73599 * 125.53883 * 179.97438 * 16 15 14 18 18 N 1.30799 * 108.91643 * 0.23291 * 16 15 14 19 19 H 0.97002 * 119.99748 * 0.02562 * 1 2 3 20 20 H 0.96997 * 119.99874 * 359.97438 * 9 7 2 21 21 H 1.08999 * 109.47136 * 59.99213 * 12 10 9 22 22 H 1.09003 * 109.46453 * 300.00021 * 12 10 9 23 23 H 1.07998 * 125.94425 * 359.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5456 1.4403 0.7002 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9974 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2439 -4.8630 0.0010 13 7 2.1959 -5.9764 0.0030 14 6 2.2489 -6.9893 0.8849 15 7 3.2375 -7.7752 0.5426 16 6 3.8363 -7.2988 -0.5491 17 17 5.1957 -8.0217 -1.3510 18 7 3.2365 -6.1954 -0.9145 19 1 -0.4850 0.8401 -0.0004 20 1 0.3534 -2.3906 0.0005 21 1 0.6181 -4.9209 -0.8896 22 1 0.6162 -4.9204 0.8903 23 1 1.5901 -7.1299 1.7291 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307350545.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:58 Heat of formation + Delta-G solvation = 30.097213 kcal Electronic energy + Delta-G solvation = -13302.018709 eV Core-core repulsion = 10598.686763 eV Total energy + Delta-G solvation = -2703.331945 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 230.031 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.16542 -40.11396 -38.02574 -36.13268 -34.82969 -33.33492 -32.38795 -29.36670 -26.62706 -23.49136 -23.08137 -21.28968 -20.05720 -18.39468 -18.04463 -16.87300 -16.76559 -16.19883 -15.88897 -15.73351 -15.51104 -14.44893 -13.84238 -13.57493 -13.16897 -13.00433 -12.73185 -12.61683 -12.46866 -12.14767 -11.57293 -11.17779 -11.08149 -10.81900 -10.24391 -10.07266 -8.51869 -6.00330 0.16481 0.52712 1.34946 1.41296 1.47924 1.54599 1.69438 1.92833 2.27348 2.96029 3.15322 3.49197 3.80392 4.20622 4.25111 4.35406 4.70659 5.07809 5.37647 5.70962 5.94078 6.52261 6.80346 7.07032 7.45074 8.01676 8.64476 Molecular weight = 230.03amu Principal moments of inertia in cm(-1) A = 0.052798 B = 0.005598 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.200156 B = 5000.520526 C = 5389.223466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.004 4.004 3 Si 0.988 3.012 4 H -0.273 1.273 5 H -0.267 1.267 6 H -0.277 1.277 7 C -0.335 4.335 8 H 0.073 0.927 9 N -0.559 5.559 10 C 0.420 3.580 11 O -0.621 6.621 12 C 0.125 3.875 13 N -0.355 5.355 14 C 0.284 3.716 15 N -0.560 5.560 16 C 0.241 3.759 17 Cl 0.051 6.949 18 N -0.307 5.307 19 H 0.280 0.720 20 H 0.403 0.597 21 H 0.135 0.865 22 H 0.181 0.819 23 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.418 -11.310 1.738 11.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.206 4.206 3 Si 0.813 3.187 4 H -0.199 1.199 5 H -0.192 1.192 6 H -0.202 1.202 7 C -0.464 4.464 8 H 0.091 0.909 9 N -0.197 5.197 10 C 0.206 3.794 11 O -0.507 6.507 12 C 0.001 3.999 13 N -0.146 5.146 14 C -0.010 4.010 15 N -0.290 5.290 16 C -0.067 4.067 17 Cl 0.078 6.922 18 N -0.139 5.139 19 H 0.090 0.910 20 H 0.238 0.762 21 H 0.153 0.847 22 H 0.198 0.802 23 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges -1.398 -11.012 1.217 11.167 hybrid contribution 0.117 0.978 -0.117 0.992 sum -1.281 -10.034 1.101 10.176 Atomic orbital electron populations 1.69632 1.06531 1.29529 1.49431 1.25939 0.96536 1.02106 0.95972 0.84994 0.77920 0.77245 0.78590 1.19866 1.19169 1.20172 1.19562 0.92533 0.83942 1.50410 0.90850 1.41770 1.09548 1.04175 1.64170 1.20782 0.88408 0.86301 0.83895 1.90615 1.16006 1.87580 1.56545 1.21869 0.88125 0.80240 1.09698 1.50012 1.23331 1.20753 1.20466 1.27190 0.95429 0.82820 0.95608 1.70181 1.11259 1.32967 1.14629 1.24333 0.95758 0.92017 0.94545 1.98381 1.36639 1.80573 1.76575 1.78271 1.03001 1.16188 1.16473 0.91042 0.76202 0.84741 0.80152 0.69803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.05 13.05 21.66 0.28 -45.77 14 2 C 0.00 -0.23 5.50 84.93 0.47 0.24 14 3 Si 0.99 41.54 29.55 68.60 2.03 43.56 14 4 H -0.27 -11.28 7.11 99.48 0.71 -10.58 14 5 H -0.27 -10.52 7.11 99.48 0.71 -9.81 14 6 H -0.28 -11.88 7.11 99.48 0.71 -11.18 14 7 C -0.33 -18.16 9.68 84.04 0.81 -17.35 14 8 H 0.07 4.37 7.16 -2.91 -0.02 4.35 14 9 N -0.56 -26.10 5.29 -306.97 -1.62 -27.72 14 10 C 0.42 18.27 7.82 87.66 0.69 18.96 14 11 O -0.62 -34.06 15.31 -3.08 -0.05 -34.11 14 12 C 0.13 3.39 7.03 85.64 0.60 3.99 14 13 N -0.35 -11.01 3.41 -355.81 -1.21 -12.22 14 14 C 0.28 6.82 12.62 180.36 2.28 9.10 14 15 N -0.56 -17.36 11.19 -194.74 -2.18 -19.54 14 16 C 0.24 8.51 8.84 180.72 1.60 10.10 14 17 Cl 0.05 1.54 29.33 -2.72 -0.08 1.46 14 18 N -0.31 -12.09 11.81 -53.71 -0.63 -12.72 14 19 H 0.28 13.28 8.31 -92.71 -0.77 12.51 14 20 H 0.40 17.01 7.90 -92.71 -0.73 16.27 14 21 H 0.13 3.02 8.14 -2.39 -0.02 3.00 14 22 H 0.18 2.75 8.09 -2.39 -0.02 2.73 14 23 H 0.29 2.69 8.06 -2.91 -0.02 2.67 14 Total: -1.00 -75.55 239.41 3.51 -72.04 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: 0.54 Total: 9.98 kcal Atomic # 6 Polarization: 18.60 SS G_CDS: 6.44 Total: 25.04 kcal Atomic # 7 Polarization: -112.60 SS G_CDS: -5.37 Total: -117.97 kcal Atomic # 8 Polarization: -34.06 SS G_CDS: -0.05 Total: -34.11 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 17 Polarization: 1.54 SS G_CDS: -0.08 Total: 1.46 kcal Total: -75.55 3.51 -72.04 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307350545.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.136 kcal (2) G-P(sol) polarization free energy of solvation -75.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds