Wall clock time and date at job start Sun Mar 29 2020 21:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99948 * 2 1 4 4 C 1.53006 * 109.47036 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47127 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47131 * 180.02562 * 5 4 3 7 7 N 1.46905 * 109.47327 * 180.02562 * 6 5 4 8 8 C 1.47481 * 110.99355 * 265.96786 * 7 6 5 9 9 C 1.53512 * 87.93063 * 221.29315 * 8 7 6 10 10 O 1.42903 * 114.17320 * 272.37598 * 9 8 7 11 11 C 1.50705 * 114.34051 * 139.68498 * 9 8 7 12 12 H 1.07999 * 120.00232 * 266.07512 * 11 9 8 13 13 C 1.37882 * 119.99730 * 86.07951 * 11 9 8 14 14 N 1.31520 * 119.99334 * 179.97438 * 13 11 9 15 15 Si 1.86795 * 120.00290 * 359.97438 * 13 11 9 16 16 H 1.48504 * 109.46547 * 90.00110 * 15 13 11 17 17 H 1.48496 * 109.47372 * 210.00030 * 15 13 11 18 18 H 1.48503 * 109.47147 * 330.00516 * 15 13 11 19 19 C 1.47475 * 111.00372 * 170.00014 * 7 6 5 20 20 H 1.09003 * 109.47182 * 300.00413 * 1 2 3 21 21 H 1.08995 * 109.47354 * 59.99869 * 1 2 3 22 22 H 1.08999 * 109.47444 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47626 * 60.00343 * 3 2 1 24 24 H 1.09001 * 109.47255 * 300.00084 * 3 2 1 25 25 H 1.09001 * 109.47002 * 299.99477 * 4 3 2 26 26 H 1.08993 * 109.46955 * 59.99914 * 4 3 2 27 27 H 1.09001 * 109.47289 * 299.99953 * 5 4 3 28 28 H 1.09004 * 109.47261 * 59.99697 * 5 4 3 29 29 H 1.09001 * 109.46997 * 299.99574 * 6 5 4 30 30 H 1.08992 * 109.47534 * 59.99520 * 6 5 4 31 31 H 1.08994 * 113.47875 * 336.06070 * 8 7 6 32 32 H 1.09007 * 113.47528 * 106.52648 * 8 7 6 33 33 H 0.96700 * 114.00252 * 273.84420 * 10 9 8 34 34 H 0.96999 * 119.99311 * 179.97438 * 14 13 11 35 35 H 1.08996 * 113.47428 * 253.46883 * 19 7 6 36 36 H 1.09005 * 113.47730 * 23.86973 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 -0.0013 6 6 5.6830 2.4615 -0.0026 7 7 6.2806 3.8035 -0.0026 8 6 6.5828 4.2473 -1.3762 9 6 7.9056 4.8145 -0.8423 10 8 7.8121 6.1528 -0.3498 11 6 9.0871 4.5965 -1.7521 12 1 9.7253 3.7366 -1.6118 13 6 9.3534 5.4950 -2.7635 14 7 10.3848 5.3049 -3.5571 15 14 8.2494 6.9820 -3.0065 16 1 8.7640 8.1176 -2.1997 17 1 8.2375 7.3604 -4.4424 18 1 6.8691 6.6504 -2.5705 19 6 7.7344 3.7348 0.2353 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.6887 1.8464 0.8900 24 1 1.6886 1.8464 -0.8900 25 1 3.8575 0.6436 0.8892 26 1 3.8567 0.6439 -0.8908 27 1 3.8358 3.1230 -0.8913 28 1 3.8365 3.1235 0.8887 29 1 6.0054 1.9207 0.8872 30 1 6.0039 1.9205 -0.8927 31 1 6.7152 3.4248 -2.0790 32 1 5.8998 5.0124 -1.7455 33 1 7.9203 6.8309 -1.0306 34 1 10.5720 5.9368 -4.2688 35 1 8.0274 4.0653 1.2317 36 1 8.1740 2.7751 -0.0366 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307711449.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:30 Heat of formation + Delta-G solvation = -55.031008 kcal Electronic energy + Delta-G solvation = -16101.061843 eV Core-core repulsion = 13393.961739 eV Total energy + Delta-G solvation = -2707.100103 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.52476 -38.13280 -35.47398 -33.89905 -32.42697 -29.73930 -27.33738 -26.13423 -25.17744 -24.09280 -21.70759 -20.73931 -19.08125 -17.31004 -16.46691 -16.44072 -16.18146 -15.43252 -15.07603 -14.87744 -14.07388 -13.72662 -13.28060 -13.08827 -12.71254 -12.32977 -12.09650 -12.04879 -11.76263 -11.49822 -11.18972 -10.97662 -10.80230 -10.59549 -10.42261 -10.16686 -9.95235 -9.84746 -9.22805 -8.91282 -8.53302 -8.10213 -6.33401 -4.37261 3.06946 3.15127 3.21837 3.55855 4.12729 4.63824 4.81800 4.87208 4.94838 5.09957 5.13438 5.25148 5.28445 5.30950 5.40167 5.59658 5.62768 5.73114 5.85134 5.92763 5.94171 6.04218 6.18959 6.34207 6.44466 6.50071 6.64938 6.89664 6.96581 6.99713 7.33123 7.80127 8.13409 8.68969 8.69944 9.26102 10.79255 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.046230 B = 0.004806 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.521988 B = 5825.022715 C = 5937.013768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.395 6.395 3 C 0.061 3.939 4 C -0.117 4.117 5 C -0.105 4.105 6 C 0.018 3.982 7 N -0.474 5.474 8 C -0.033 4.033 9 C 0.202 3.798 10 O -0.548 6.548 11 C -0.534 4.534 12 H 0.086 0.914 13 C 0.076 3.924 14 N -0.883 5.883 15 Si 0.862 3.138 16 H -0.267 1.267 17 H -0.286 1.286 18 H -0.254 1.254 19 C 0.018 3.982 20 H 0.040 0.960 21 H 0.040 0.960 22 H 0.084 0.916 23 H 0.049 0.951 24 H 0.049 0.951 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.347 0.653 34 H 0.269 0.731 35 H 0.076 0.924 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.256 -6.124 4.953 17.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.015 4.015 4 C -0.156 4.156 5 C -0.143 4.143 6 C -0.111 4.111 7 N -0.196 5.196 8 C -0.163 4.163 9 C 0.161 3.839 10 O -0.359 6.359 11 C -0.572 4.572 12 H 0.104 0.896 13 C -0.128 4.128 14 N -0.519 5.519 15 Si 0.691 3.309 16 H -0.194 1.194 17 H -0.213 1.213 18 H -0.179 1.179 19 C -0.111 4.111 20 H 0.058 0.942 21 H 0.059 0.941 22 H 0.102 0.898 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.199 0.801 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.579 -6.164 5.792 17.727 hybrid contribution -0.230 0.690 -1.348 1.531 sum -15.809 -5.475 4.445 17.310 Atomic orbital electron populations 1.22719 0.81288 1.02563 0.99922 1.87871 1.19528 1.28550 1.95431 1.22596 0.94498 0.84228 1.00185 1.21514 0.92537 0.98259 1.03248 1.21345 0.95097 0.95210 1.02686 1.22647 0.94877 0.92660 1.00904 1.68858 1.12591 1.19769 1.18351 1.25005 1.00168 1.00456 0.90660 1.20086 0.91890 0.80281 0.91666 1.86462 1.95287 1.15686 1.38473 1.21334 1.11148 1.11779 1.12921 0.89558 1.25022 0.94775 0.97717 0.95268 1.69877 1.26921 1.36814 1.18283 0.87271 0.82198 0.83704 0.77771 1.19406 1.21309 1.17943 1.23897 0.88070 0.98552 1.00544 0.94176 0.94149 0.89777 0.93290 0.93319 0.91188 0.91215 0.91962 0.91324 0.91580 0.93812 0.90973 0.91419 0.80090 0.92084 0.90562 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.70 10.70 -35.23 -0.38 -5.07 16 3 C 0.06 0.68 5.94 37.16 0.22 0.90 16 4 C -0.12 -1.39 5.58 -26.73 -0.15 -1.54 16 5 C -0.11 -1.43 5.54 -26.73 -0.15 -1.58 16 6 C 0.02 0.29 4.82 -3.82 -0.02 0.27 16 7 N -0.47 -9.39 6.33 -244.66 -1.55 -10.94 16 8 C -0.03 -0.73 6.55 -7.55 -0.05 -0.78 16 9 C 0.20 4.91 1.09 -91.24 -0.10 4.81 16 10 O -0.55 -13.78 13.32 -35.23 -0.47 -14.25 16 11 C -0.53 -14.70 9.28 -34.44 -0.32 -15.02 16 12 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 13 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 14 N -0.88 -25.86 13.96 55.43 0.77 -25.08 16 15 Si 0.86 20.20 24.41 -169.99 -4.15 16.05 16 16 H -0.27 -6.07 7.06 56.52 0.40 -5.67 16 17 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.25 -5.73 5.47 56.52 0.31 -5.42 16 19 C 0.02 0.38 7.09 -7.56 -0.05 0.33 16 20 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 21 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 22 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 30 H 0.04 0.71 7.30 -51.93 -0.38 0.33 16 31 H 0.07 1.54 7.38 -51.93 -0.38 1.16 16 32 H 0.07 1.48 7.11 -51.92 -0.37 1.11 16 33 H 0.35 8.37 3.18 45.56 0.14 8.51 16 34 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.07 1.45 7.87 -51.93 -0.41 1.04 16 LS Contribution 289.42 15.07 4.36 4.36 Total: -1.00 -29.99 289.42 -6.71 -36.69 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -5.70 Total: 7.46 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: 0.40 Total: -9.21 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: -0.78 Total: -36.02 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.85 Total: -19.33 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.15 Total: 16.05 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.99 -6.71 -36.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307711449.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.337 kcal (2) G-P(sol) polarization free energy of solvation -29.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds