Wall clock time and date at job start Sun Mar 29 2020 21:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99948 * 2 1 4 4 C 1.53006 * 109.47036 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47127 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47131 * 180.02562 * 5 4 3 7 7 N 1.46905 * 109.47327 * 180.02562 * 6 5 4 8 8 C 1.47481 * 110.99355 * 265.96786 * 7 6 5 9 9 C 1.53512 * 87.93063 * 221.29315 * 8 7 6 10 10 O 1.42903 * 114.17320 * 272.37598 * 9 8 7 11 11 C 1.50705 * 114.34051 * 139.68498 * 9 8 7 12 12 H 1.07999 * 120.00232 * 266.07512 * 11 9 8 13 13 C 1.37882 * 119.99730 * 86.07951 * 11 9 8 14 14 N 1.31520 * 119.99334 * 179.97438 * 13 11 9 15 15 Si 1.86795 * 120.00290 * 359.97438 * 13 11 9 16 16 H 1.48504 * 109.46547 * 90.00110 * 15 13 11 17 17 H 1.48496 * 109.47372 * 210.00030 * 15 13 11 18 18 H 1.48503 * 109.47147 * 330.00516 * 15 13 11 19 19 C 1.47475 * 111.00372 * 170.00014 * 7 6 5 20 20 H 1.09003 * 109.47182 * 300.00413 * 1 2 3 21 21 H 1.08995 * 109.47354 * 59.99869 * 1 2 3 22 22 H 1.08999 * 109.47444 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47626 * 60.00343 * 3 2 1 24 24 H 1.09001 * 109.47255 * 300.00084 * 3 2 1 25 25 H 1.09001 * 109.47002 * 299.99477 * 4 3 2 26 26 H 1.08993 * 109.46955 * 59.99914 * 4 3 2 27 27 H 1.09001 * 109.47289 * 299.99953 * 5 4 3 28 28 H 1.09004 * 109.47261 * 59.99697 * 5 4 3 29 29 H 1.09001 * 109.46997 * 299.99574 * 6 5 4 30 30 H 1.08992 * 109.47534 * 59.99520 * 6 5 4 31 31 H 1.08994 * 113.47875 * 336.06070 * 8 7 6 32 32 H 1.09007 * 113.47528 * 106.52648 * 8 7 6 33 33 H 0.96700 * 114.00252 * 273.84420 * 10 9 8 34 34 H 0.96999 * 119.99311 * 179.97438 * 14 13 11 35 35 H 1.08996 * 113.47428 * 253.46883 * 19 7 6 36 36 H 1.09005 * 113.47730 * 23.86973 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 -0.0013 6 6 5.6830 2.4615 -0.0026 7 7 6.2806 3.8035 -0.0026 8 6 6.5828 4.2473 -1.3762 9 6 7.9056 4.8145 -0.8423 10 8 7.8121 6.1528 -0.3498 11 6 9.0871 4.5965 -1.7521 12 1 9.7253 3.7366 -1.6118 13 6 9.3534 5.4950 -2.7635 14 7 10.3848 5.3049 -3.5571 15 14 8.2494 6.9820 -3.0065 16 1 8.7640 8.1176 -2.1997 17 1 8.2375 7.3604 -4.4424 18 1 6.8691 6.6504 -2.5705 19 6 7.7344 3.7348 0.2353 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.6887 1.8464 0.8900 24 1 1.6886 1.8464 -0.8900 25 1 3.8575 0.6436 0.8892 26 1 3.8567 0.6439 -0.8908 27 1 3.8358 3.1230 -0.8913 28 1 3.8365 3.1235 0.8887 29 1 6.0054 1.9207 0.8872 30 1 6.0039 1.9205 -0.8927 31 1 6.7152 3.4248 -2.0790 32 1 5.8998 5.0124 -1.7455 33 1 7.9203 6.8309 -1.0306 34 1 10.5720 5.9368 -4.2688 35 1 8.0274 4.0653 1.2317 36 1 8.1740 2.7751 -0.0366 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307711449.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:29 Heat of formation + Delta-G solvation = -79.763472 kcal Electronic energy + Delta-G solvation = -16102.134323 eV Core-core repulsion = 13393.961739 eV Total energy + Delta-G solvation = -2708.172583 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.22312 -38.96013 -37.10540 -35.19280 -34.54613 -31.06747 -28.78427 -27.24987 -26.89114 -25.48081 -22.94195 -21.94008 -20.89553 -19.34718 -18.17944 -17.27735 -17.25333 -16.94610 -16.36214 -15.97292 -15.45831 -15.28353 -15.10145 -14.66369 -14.29992 -13.91669 -13.52127 -13.13157 -13.01657 -12.76853 -12.60457 -12.42544 -12.12222 -12.02679 -11.91732 -11.77793 -11.45187 -11.11242 -10.92581 -10.62242 -10.41391 -9.76397 -8.45867 -6.55819 1.21204 1.27803 1.36975 2.15333 2.73084 2.77776 3.11918 3.55840 3.83740 3.99613 4.02370 4.11522 4.19178 4.38463 4.39765 4.50633 4.53339 4.57000 4.71407 4.71929 4.77382 4.81640 4.85493 4.90676 4.97836 5.12321 5.20699 5.30404 5.37183 5.46815 6.00837 6.21645 6.24059 6.48894 6.75497 7.11896 8.70183 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.046230 B = 0.004806 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.521988 B = 5825.022715 C = 5937.013768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.062 3.938 4 C -0.111 4.111 5 C -0.096 4.096 6 C 0.015 3.985 7 N -0.471 5.471 8 C -0.023 4.023 9 C 0.182 3.818 10 O -0.554 6.554 11 C -0.546 4.546 12 H 0.050 0.950 13 C 0.022 3.978 14 N -0.928 5.928 15 Si 0.923 3.077 16 H -0.253 1.253 17 H -0.281 1.281 18 H -0.238 1.238 19 C 0.022 3.978 20 H 0.050 0.950 21 H 0.048 0.952 22 H 0.097 0.903 23 H 0.059 0.941 24 H 0.053 0.947 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.042 0.958 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.350 0.650 34 H 0.273 0.727 35 H 0.081 0.919 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.524 -5.794 5.587 19.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.339 6.339 3 C -0.015 4.015 4 C -0.149 4.149 5 C -0.134 4.134 6 C -0.113 4.113 7 N -0.193 5.193 8 C -0.153 4.153 9 C 0.142 3.858 10 O -0.366 6.366 11 C -0.584 4.584 12 H 0.069 0.931 13 C -0.178 4.178 14 N -0.566 5.566 15 Si 0.748 3.252 16 H -0.178 1.178 17 H -0.208 1.208 18 H -0.162 1.162 19 C -0.106 4.106 20 H 0.069 0.931 21 H 0.066 0.934 22 H 0.115 0.885 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.202 0.798 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.862 -5.846 6.444 19.869 hybrid contribution 0.515 0.488 -1.510 1.668 sum -17.347 -5.358 4.935 18.815 Atomic orbital electron populations 1.22923 0.79570 1.03798 1.00825 1.87825 1.21492 1.28967 1.95617 1.22573 0.93738 0.84246 1.00916 1.21406 0.93348 0.96978 1.03155 1.21237 0.93192 0.96295 1.02644 1.22758 0.96365 0.90645 1.01561 1.68819 1.11513 1.22263 1.16700 1.24797 0.98385 1.00375 0.91705 1.20232 0.91940 0.80787 0.92876 1.86454 1.95290 1.15974 1.38837 1.21515 1.12069 1.10874 1.13913 0.93144 1.25871 0.96207 1.00948 0.94756 1.70013 1.28979 1.38391 1.19238 0.86249 0.80878 0.79950 0.78100 1.17832 1.20791 1.16228 1.23846 0.89271 0.97697 0.99826 0.93123 0.93365 0.88504 0.92303 0.92855 0.90904 0.91711 0.92391 0.90953 0.90157 0.93944 0.91022 0.91117 0.79792 0.91778 0.90045 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 11.01 113.37 1.25 1.61 16 2 O -0.42 -9.15 10.70 -148.98 -1.59 -10.75 16 3 C 0.06 1.22 5.94 71.98 0.43 1.65 16 4 C -0.11 -2.38 5.58 30.60 0.17 -2.21 16 5 C -0.10 -2.37 5.54 30.59 0.17 -2.20 16 6 C 0.02 0.46 4.82 86.30 0.42 0.87 16 7 N -0.47 -17.71 6.33 -928.35 -5.88 -23.59 16 8 C -0.02 -0.96 6.55 83.57 0.55 -0.42 16 9 C 0.18 8.72 1.09 -11.20 -0.01 8.71 16 10 O -0.55 -26.93 13.32 -148.98 -1.98 -28.91 16 11 C -0.55 -30.54 9.28 25.60 0.24 -30.30 16 12 H 0.05 3.08 8.06 -2.91 -0.02 3.06 16 13 C 0.02 1.26 5.47 84.66 0.46 1.72 16 14 N -0.93 -55.49 13.96 21.45 0.30 -55.19 16 15 Si 0.92 41.07 24.41 68.60 1.67 42.74 16 16 H -0.25 -10.61 7.06 99.48 0.70 -9.91 16 17 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 18 H -0.24 -9.90 5.47 99.48 0.54 -9.35 16 19 C 0.02 0.92 7.09 83.57 0.59 1.52 16 20 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 21 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 22 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 29 H 0.08 2.19 8.08 -2.39 -0.02 2.17 16 30 H 0.04 1.29 7.30 -2.39 -0.02 1.28 16 31 H 0.07 2.98 7.38 -2.39 -0.02 2.96 16 32 H 0.07 2.92 7.11 -2.38 -0.02 2.90 16 33 H 0.35 16.09 3.18 -74.06 -0.24 15.85 16 34 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 35 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 36 H 0.08 3.08 7.87 -2.38 -0.02 3.06 16 Total: -1.00 -63.68 289.42 -2.59 -66.27 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: 0.64 Total: 28.49 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: 4.26 Total: -19.06 kcal Atomic # 7 Polarization: -73.20 SS G_CDS: -5.58 Total: -78.78 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: -3.58 Total: -39.66 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 1.67 Total: 42.74 kcal Total: -63.68 -2.59 -66.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307711449.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.494 kcal (2) G-P(sol) polarization free energy of solvation -63.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds