Wall clock time and date at job start Sun Mar 29 2020 21:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31440 * 1 3 3 Si 1.86801 * 120.00134 * 2 1 4 4 H 1.48497 * 109.47003 * 240.00074 * 3 2 1 5 5 H 1.48497 * 109.47282 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46870 * 120.00595 * 3 2 1 7 7 C 1.38763 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00239 * 179.97438 * 7 2 1 9 9 O 1.34920 * 119.99814 * 359.97438 * 7 2 1 10 10 C 1.34312 * 117.00020 * 179.97438 * 9 7 2 11 11 O 1.21205 * 119.99861 * 0.02562 * 10 9 7 12 12 C 1.50692 * 119.99879 * 180.02562 * 10 9 7 13 13 C 1.47203 * 109.46900 * 180.02562 * 12 10 9 14 14 C 7.01674 * 105.61473 * 180.02562 * 2 1 3 15 15 C 8.30923 * 110.24248 * 180.02562 * 2 1 3 16 16 C 1.39535 * 120.13986 * 131.51491 * 15 14 13 17 17 C 1.37972 * 119.85845 * 179.97438 * 16 15 14 18 18 C 1.38346 * 120.13996 * 359.97438 * 17 16 15 19 19 C 1.38346 * 120.28578 * 0.02562 * 18 17 16 20 20 C 1.37972 * 120.14050 * 359.97438 * 19 18 17 21 21 H 0.96999 * 119.99480 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.47631 * 60.00482 * 12 10 9 23 23 H 1.08996 * 109.47410 * 300.00028 * 12 10 9 24 24 H 1.08007 * 120.07409 * 359.69681 * 16 15 14 25 25 H 1.08000 * 119.92892 * 180.02562 * 17 16 15 26 26 H 1.08003 * 119.85471 * 179.97438 * 18 17 16 27 27 H 1.08001 * 119.92423 * 180.02562 * 19 18 17 28 28 H 1.08003 * 120.06529 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.1022 1.6963 -1.2125 5 1 1.2835 2.7465 0.0006 6 1 3.1023 1.6963 1.2125 7 6 2.0082 -1.2017 -0.0005 8 1 3.0882 -1.2018 -0.0010 9 8 1.3336 -2.3701 -0.0005 10 6 2.0650 -3.4966 -0.0016 11 8 3.2754 -3.4332 -0.0020 12 6 1.3808 -4.8392 -0.0023 13 6 2.3946 -5.9065 -0.0028 14 6 3.2031 -6.7578 -0.0030 15 6 4.1893 -7.7960 -0.0035 16 6 5.2516 -7.7529 -0.9073 17 6 6.1988 -8.7561 -0.9023 18 6 6.0974 -9.8028 -0.0034 19 6 5.0467 -9.8514 0.8953 20 6 4.0929 -8.8545 0.9005 21 1 -0.4849 0.8401 0.0004 22 1 0.7577 -4.9292 -0.8921 23 1 0.7584 -4.9303 0.8879 24 1 5.3297 -6.9384 -1.6123 25 1 7.0217 -8.7236 -1.6010 26 1 6.8413 -10.5858 -0.0038 27 1 4.9734 -10.6711 1.5947 28 1 3.2729 -8.8939 1.6023 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319235529.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:22 Heat of formation + Delta-G solvation = -31.489797 kcal Electronic energy + Delta-G solvation = -13914.943689 eV Core-core repulsion = 11282.621572 eV Total energy + Delta-G solvation = -2632.322117 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.073 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.07693 -40.05185 -37.49151 -35.35470 -34.33939 -32.62170 -31.90779 -29.73015 -27.33540 -24.06704 -23.44353 -22.42002 -19.92909 -19.13682 -18.58422 -17.16802 -16.99759 -16.62464 -16.33141 -15.96307 -15.58887 -14.63260 -14.59819 -14.37847 -14.33220 -13.97542 -13.64809 -13.09231 -12.40811 -12.35897 -12.23564 -12.17314 -12.07138 -11.90943 -11.26494 -11.01381 -10.72076 -9.93783 -9.45704 -8.56402 -6.36836 -0.09032 0.42699 1.27668 1.30098 1.40688 1.51212 1.60186 1.80894 2.17118 2.76493 2.94676 3.02530 3.12131 4.01584 4.04628 4.16567 4.26826 4.42692 4.44369 4.51636 4.62744 4.74000 5.04825 5.08876 5.14929 5.46191 5.52636 5.53961 5.79799 6.00544 6.43487 6.60538 6.88184 7.69441 8.63570 Molecular weight = 230.07amu Principal moments of inertia in cm(-1) A = 0.057563 B = 0.004119 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.307550 B = 6796.793769 C = 7132.098344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.002 4.002 3 Si 1.018 2.982 4 H -0.263 1.263 5 H -0.257 1.257 6 H -0.263 1.263 7 C -0.425 4.425 8 H 0.079 0.921 9 O -0.237 6.237 10 C 0.397 3.603 11 O -0.584 6.584 12 C 0.021 3.979 13 C -0.158 4.158 14 C -0.148 4.148 15 C -0.013 4.013 16 C -0.116 4.116 17 C -0.120 4.120 18 C -0.108 4.108 19 C -0.117 4.117 20 C -0.107 4.107 21 H 0.280 0.720 22 H 0.149 0.851 23 H 0.150 0.850 24 H 0.115 0.885 25 H 0.152 0.848 26 H 0.161 0.839 27 H 0.159 0.841 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.250 -17.333 0.250 18.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.203 4.203 3 Si 0.836 3.164 4 H -0.187 1.187 5 H -0.180 1.180 6 H -0.188 1.188 7 C -0.500 4.500 8 H 0.097 0.903 9 O -0.145 6.145 10 C 0.245 3.755 11 O -0.482 6.482 12 C -0.015 4.015 13 C -0.158 4.158 14 C -0.148 4.148 15 C -0.013 4.013 16 C -0.134 4.134 17 C -0.138 4.138 18 C -0.125 4.125 19 C -0.135 4.135 20 C -0.125 4.125 21 H 0.090 0.910 22 H 0.167 0.833 23 H 0.167 0.833 24 H 0.133 0.867 25 H 0.169 0.831 26 H 0.178 0.822 27 H 0.177 0.823 28 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.351 -17.162 0.248 18.671 hybrid contribution 0.142 1.047 -0.079 1.059 sum 7.493 -16.115 0.170 17.772 Atomic orbital electron populations 1.70054 1.07515 1.29583 1.46397 1.26532 0.96949 1.02232 0.94547 0.84688 0.77633 0.74346 0.79691 1.18732 1.18045 1.18759 1.21369 0.92130 0.81131 1.55417 0.90315 1.83879 1.39944 1.13957 1.76695 1.24102 0.86602 0.88110 0.76705 1.90550 1.17558 1.88620 1.51509 1.18100 0.93576 0.80960 1.08834 1.21686 0.98149 0.95715 1.00267 1.19739 0.95423 0.97240 1.02408 1.16202 0.93067 0.92598 0.99394 1.21401 0.94207 0.99701 0.98090 1.21414 0.98691 0.93663 0.99993 1.21729 0.98311 0.98348 0.94142 1.21480 0.93780 0.98620 0.99596 1.21449 1.00335 0.93171 0.97498 0.91021 0.83313 0.83251 0.86724 0.83068 0.82188 0.82309 0.84855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.94 13.67 21.63 0.30 -52.64 15 2 C 0.00 -0.11 5.49 84.88 0.47 0.36 15 3 Si 1.02 43.78 29.55 68.60 2.03 45.81 15 4 H -0.26 -10.94 7.11 99.48 0.71 -10.23 15 5 H -0.26 -10.07 7.11 99.48 0.71 -9.36 15 6 H -0.26 -10.96 7.11 99.48 0.71 -10.25 15 7 C -0.42 -26.19 9.65 67.95 0.66 -25.54 15 8 H 0.08 4.97 6.86 -2.91 -0.02 4.95 15 9 O -0.24 -14.01 9.75 14.86 0.14 -13.87 15 10 C 0.40 20.55 7.89 71.23 0.56 21.11 15 11 O -0.58 -34.16 15.26 20.79 0.32 -33.85 15 12 C 0.02 0.79 6.30 28.04 0.18 0.96 15 13 C -0.16 -6.08 12.58 31.13 0.39 -5.69 15 14 C -0.15 -5.46 13.24 30.02 0.40 -5.07 15 15 C -0.01 -0.39 5.72 -21.41 -0.12 -0.51 15 16 C -0.12 -3.17 9.75 22.52 0.22 -2.95 15 17 C -0.12 -2.33 10.03 22.23 0.22 -2.11 15 18 C -0.11 -1.68 10.04 22.32 0.22 -1.46 15 19 C -0.12 -1.99 10.03 22.23 0.22 -1.77 15 20 C -0.11 -2.52 9.75 22.52 0.22 -2.30 15 21 H 0.28 14.95 8.31 -92.71 -0.77 14.18 15 22 H 0.15 4.53 8.14 -2.39 -0.02 4.51 15 23 H 0.15 4.52 8.14 -2.39 -0.02 4.50 15 24 H 0.11 3.29 8.06 -2.91 -0.02 3.27 15 25 H 0.15 2.09 8.06 -2.91 -0.02 2.06 15 26 H 0.16 1.33 8.06 -2.91 -0.02 1.31 15 27 H 0.16 1.61 8.06 -2.91 -0.02 1.59 15 28 H 0.13 2.81 8.06 -2.91 -0.02 2.79 15 Total: -1.00 -77.78 271.77 7.60 -70.19 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 1.17 Total: 9.31 kcal Atomic # 6 Polarization: -28.59 SS G_CDS: 3.64 Total: -24.95 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: 0.30 Total: -52.64 kcal Atomic # 8 Polarization: -48.18 SS G_CDS: 0.46 Total: -47.71 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -77.78 7.60 -70.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319235529.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.698 kcal (2) G-P(sol) polarization free energy of solvation -77.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds