Wall clock time and date at job start Sun Mar 29 2020 21:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39376 * 120.15898 * 2 1 4 4 C 1.43204 * 120.07215 * 0.02562 * 3 2 1 5 5 N 3.48207 * 80.49871 * 359.97438 * 2 1 3 6 6 C 1.39723 * 119.84789 * 180.02562 * 3 2 1 7 7 C 1.38105 * 120.15192 * 359.97438 * 6 3 2 8 8 C 1.38042 * 120.31012 * 359.76404 * 7 6 3 9 9 C 1.39371 * 120.14861 * 180.02562 * 2 1 3 10 10 C 1.47739 * 120.07957 * 359.97438 * 9 2 1 11 11 O 1.21593 * 120.00105 * 353.95577 * 10 9 2 12 12 N 1.34771 * 120.00078 * 174.22181 * 10 9 2 13 13 C 1.36881 * 120.00080 * 180.02562 * 12 10 9 14 14 H 1.07998 * 119.99753 * 0.02562 * 13 12 10 15 15 C 1.39053 * 119.99855 * 180.02562 * 13 12 10 16 16 N 1.31357 * 120.00087 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99798 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47314 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47439 * 120.00211 * 17 15 13 20 20 H 1.48505 * 109.46916 * 240.00044 * 17 15 13 21 21 H 1.08996 * 109.46830 * 263.51738 * 1 2 3 22 22 H 1.08998 * 109.46749 * 23.51250 * 1 2 3 23 23 H 1.08991 * 109.46882 * 143.51644 * 1 2 3 24 24 H 1.07999 * 119.92404 * 180.02562 * 6 3 2 25 25 H 1.07996 * 119.84467 * 180.02562 * 7 6 3 26 26 H 1.08002 * 119.91919 * 180.28071 * 8 7 6 27 27 H 0.97001 * 120.00103 * 0.02562 * 12 10 9 28 28 H 0.96997 * 120.00326 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2073 1.2051 0.0000 4 6 1.4963 2.4482 0.0006 5 7 0.9323 3.4343 -0.0015 6 6 3.6045 1.1975 -0.0005 7 6 4.2917 -0.0004 -0.0005 8 6 3.6046 -1.1977 0.0049 9 6 2.2070 -1.2052 -0.0005 10 6 1.4734 -2.4876 -0.0005 11 8 0.2627 -2.4954 0.1108 12 7 2.1467 -3.6491 -0.1186 13 6 1.4670 -4.8372 -0.1191 14 1 0.3911 -4.8438 -0.0253 15 6 2.1618 -6.0356 -0.2403 16 7 3.4704 -6.0275 -0.3538 17 14 1.2341 -7.6569 -0.2418 18 1 -0.2209 -7.3949 -0.1012 19 1 1.4878 -8.3713 -1.5187 20 1 1.6979 -8.4935 0.8941 21 1 -0.3633 -0.1160 1.0211 22 1 -0.3633 0.9423 -0.4100 23 1 -0.3633 -0.8262 -0.6110 24 1 4.1483 2.1306 -0.0001 25 1 5.3717 -0.0005 -0.0005 26 1 4.1484 -2.1308 0.0095 27 1 3.1130 -3.6431 -0.2031 28 1 3.9551 -6.8635 -0.4380 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322689503.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:49 Heat of formation + Delta-G solvation = 12.874700 kcal Electronic energy + Delta-G solvation = -14820.040152 eV Core-core repulsion = 12221.934576 eV Total energy + Delta-G solvation = -2598.105577 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.80918 -37.74820 -36.17060 -34.36624 -32.46976 -31.69809 -30.79404 -27.10449 -25.18245 -23.79483 -21.94152 -19.99783 -18.34809 -17.91724 -15.94630 -15.65803 -15.20554 -14.79999 -14.39698 -14.00311 -13.65022 -13.48668 -12.87522 -12.77507 -12.63848 -12.46533 -11.88840 -11.68241 -11.59588 -11.48468 -11.21944 -10.97122 -10.44406 -10.38646 -9.72002 -8.73806 -8.57887 -8.37348 -8.15169 -6.65872 -3.98118 0.86370 1.30965 2.75840 2.91366 3.11252 3.17245 3.24009 3.74255 3.94974 4.05293 4.32544 4.71908 4.96612 5.05095 5.17870 5.25646 5.44563 5.72119 5.86457 5.93981 6.16671 6.21032 6.36509 6.51886 6.55953 6.83842 7.02326 7.34568 7.57887 7.86369 8.39762 8.96374 9.30833 9.85852 10.50770 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.047820 B = 0.006255 C = 0.005553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.385997 B = 4475.048631 C = 5041.121108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.011 3.989 3 C -0.051 4.051 4 C 0.270 3.730 5 N -0.435 5.435 6 C -0.069 4.069 7 C -0.132 4.132 8 C -0.071 4.071 9 C -0.100 4.100 10 C 0.463 3.537 11 O -0.588 6.588 12 N -0.540 5.540 13 C -0.294 4.294 14 H 0.110 0.890 15 C 0.024 3.976 16 N -0.887 5.887 17 Si 0.934 3.066 18 H -0.265 1.265 19 H -0.279 1.279 20 H -0.279 1.279 21 H 0.078 0.922 22 H 0.045 0.955 23 H 0.111 0.889 24 H 0.129 0.871 25 H 0.133 0.867 26 H 0.135 0.865 27 H 0.394 0.606 28 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.075 7.126 0.159 8.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.007 3.993 3 C -0.055 4.055 4 C -0.045 4.045 5 N -0.111 5.111 6 C -0.090 4.090 7 C -0.150 4.150 8 C -0.091 4.091 9 C -0.104 4.104 10 C 0.252 3.748 11 O -0.475 6.475 12 N -0.173 5.173 13 C -0.423 4.423 14 H 0.128 0.872 15 C -0.179 4.179 16 N -0.526 5.526 17 Si 0.760 3.240 18 H -0.189 1.189 19 H -0.205 1.205 20 H -0.205 1.205 21 H 0.096 0.904 22 H 0.064 0.936 23 H 0.129 0.871 24 H 0.146 0.854 25 H 0.151 0.849 26 H 0.153 0.847 27 H 0.229 0.771 28 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.530 8.428 0.205 8.802 hybrid contribution 0.658 -1.220 -0.033 1.387 sum 3.189 7.208 0.172 7.884 Atomic orbital electron populations 1.21151 0.89680 1.02748 1.04280 1.20013 0.96902 0.89941 0.92487 1.15836 0.92340 0.86256 1.11062 1.25638 0.92997 0.92638 0.93185 1.81198 1.08605 1.11499 1.09768 1.21115 0.91611 0.98828 0.97484 1.20932 1.00179 0.91533 1.02315 1.21682 0.93449 0.98922 0.95070 1.20125 0.93299 0.94374 1.02593 1.17571 0.87474 0.83054 0.86732 1.90557 1.13392 1.86337 1.57238 1.41909 1.09885 1.04880 1.60666 1.19909 0.94258 0.82108 1.46044 0.87200 1.25398 0.95701 1.00208 0.96643 1.69580 1.06428 1.29063 1.47577 0.85720 0.79812 0.80474 0.77947 1.18922 1.20485 1.20492 0.90358 0.93646 0.87067 0.85352 0.84937 0.84735 0.77143 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.09 8.42 36.01 0.30 -1.79 15 2 C 0.01 0.18 5.95 -103.77 -0.62 -0.44 15 3 C -0.05 -0.73 5.73 -106.99 -0.61 -1.35 15 4 C 0.27 4.01 13.69 -22.47 -0.31 3.71 15 5 N -0.43 -7.06 18.54 41.84 0.78 -6.28 15 6 C -0.07 -0.81 9.75 -39.08 -0.38 -1.19 15 7 C -0.13 -1.55 10.02 -39.70 -0.40 -1.95 15 8 C -0.07 -1.05 9.52 -39.08 -0.37 -1.43 15 9 C -0.10 -1.81 5.87 -105.02 -0.62 -2.42 15 10 C 0.46 10.47 7.65 -12.38 -0.09 10.38 15 11 O -0.59 -14.79 12.90 5.28 0.07 -14.73 15 12 N -0.54 -12.83 5.23 -11.86 -0.06 -12.90 15 13 C -0.29 -7.64 9.68 -15.00 -0.15 -7.79 15 14 H 0.11 2.99 7.15 -52.49 -0.38 2.62 15 15 C 0.02 0.61 5.50 -17.45 -0.10 0.51 15 16 N -0.89 -22.35 13.05 55.50 0.72 -21.63 15 17 Si 0.93 19.65 29.55 -169.99 -5.02 14.62 15 18 H -0.27 -5.59 7.11 56.52 0.40 -5.19 15 19 H -0.28 -5.80 7.11 56.52 0.40 -5.39 15 20 H -0.28 -5.80 7.11 56.52 0.40 -5.40 15 21 H 0.08 1.34 8.14 -51.93 -0.42 0.92 15 22 H 0.04 0.70 6.86 -51.93 -0.36 0.34 15 23 H 0.11 2.16 5.84 -51.93 -0.30 1.86 15 24 H 0.13 1.15 8.06 -52.49 -0.42 0.73 15 25 H 0.13 1.15 8.06 -52.49 -0.42 0.73 15 26 H 0.13 1.94 6.44 -52.49 -0.34 1.60 15 27 H 0.39 8.78 5.95 -40.82 -0.24 8.54 15 28 H 0.28 6.54 8.31 -40.82 -0.34 6.20 15 LS Contribution 257.17 15.07 3.88 3.88 Total: -1.00 -28.24 257.17 -5.00 -33.24 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -2.02 Total: 7.55 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -3.34 Total: -3.76 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 1.44 Total: -40.81 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: 0.07 Total: -14.73 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.62 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.24 -5.00 -33.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322689503.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.118 kcal (2) G-P(sol) polarization free energy of solvation -28.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds