Wall clock time and date at job start Sun Mar 29 2020 21:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39376 * 120.15898 * 2 1 4 4 C 1.43204 * 120.07215 * 0.02562 * 3 2 1 5 5 N 3.48207 * 80.49871 * 359.97438 * 2 1 3 6 6 C 1.39723 * 119.84789 * 180.02562 * 3 2 1 7 7 C 1.38105 * 120.15192 * 359.97438 * 6 3 2 8 8 C 1.38042 * 120.31012 * 359.76404 * 7 6 3 9 9 C 1.39371 * 120.14861 * 180.02562 * 2 1 3 10 10 C 1.47739 * 120.07957 * 359.97438 * 9 2 1 11 11 O 1.21593 * 120.00105 * 353.95577 * 10 9 2 12 12 N 1.34771 * 120.00078 * 174.22181 * 10 9 2 13 13 C 1.36881 * 120.00080 * 180.02562 * 12 10 9 14 14 H 1.07998 * 119.99753 * 0.02562 * 13 12 10 15 15 C 1.39053 * 119.99855 * 180.02562 * 13 12 10 16 16 N 1.31357 * 120.00087 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99798 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47314 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47439 * 120.00211 * 17 15 13 20 20 H 1.48505 * 109.46916 * 240.00044 * 17 15 13 21 21 H 1.08996 * 109.46830 * 263.51738 * 1 2 3 22 22 H 1.08998 * 109.46749 * 23.51250 * 1 2 3 23 23 H 1.08991 * 109.46882 * 143.51644 * 1 2 3 24 24 H 1.07999 * 119.92404 * 180.02562 * 6 3 2 25 25 H 1.07996 * 119.84467 * 180.02562 * 7 6 3 26 26 H 1.08002 * 119.91919 * 180.28071 * 8 7 6 27 27 H 0.97001 * 120.00103 * 0.02562 * 12 10 9 28 28 H 0.96997 * 120.00326 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2073 1.2051 0.0000 4 6 1.4963 2.4482 0.0006 5 7 0.9323 3.4343 -0.0015 6 6 3.6045 1.1975 -0.0005 7 6 4.2917 -0.0004 -0.0005 8 6 3.6046 -1.1977 0.0049 9 6 2.2070 -1.2052 -0.0005 10 6 1.4734 -2.4876 -0.0005 11 8 0.2627 -2.4954 0.1108 12 7 2.1467 -3.6491 -0.1186 13 6 1.4670 -4.8372 -0.1191 14 1 0.3911 -4.8438 -0.0253 15 6 2.1618 -6.0356 -0.2403 16 7 3.4704 -6.0275 -0.3538 17 14 1.2341 -7.6569 -0.2418 18 1 -0.2209 -7.3949 -0.1012 19 1 1.4878 -8.3713 -1.5187 20 1 1.6979 -8.4935 0.8941 21 1 -0.3633 -0.1160 1.0211 22 1 -0.3633 0.9423 -0.4100 23 1 -0.3633 -0.8262 -0.6110 24 1 4.1483 2.1306 -0.0001 25 1 5.3717 -0.0005 -0.0005 26 1 4.1484 -2.1308 0.0095 27 1 3.1130 -3.6431 -0.2031 28 1 3.9551 -6.8635 -0.4380 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322689503.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:49 Heat of formation + Delta-G solvation = -4.424608 kcal Electronic energy + Delta-G solvation = -14820.790307 eV Core-core repulsion = 12221.934576 eV Total energy + Delta-G solvation = -2598.855731 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.20001 -39.33707 -37.41906 -36.18507 -33.88771 -33.27966 -32.21400 -28.47375 -26.93095 -25.04948 -23.36565 -21.43972 -20.04288 -19.47161 -17.42402 -16.93397 -16.58676 -16.44303 -15.88516 -15.64339 -15.03314 -14.97512 -14.27004 -14.05158 -13.95635 -13.83953 -13.56487 -13.12660 -12.94646 -12.84861 -12.73294 -12.39903 -12.12371 -12.09371 -11.54298 -10.20099 -10.08684 -9.93476 -9.70973 -8.52365 -5.95562 -0.29746 0.08006 1.39347 1.44508 1.56108 1.58516 1.75789 2.28462 2.29570 2.78056 2.88425 3.17052 3.31538 3.79011 3.96719 4.03728 4.21391 4.48586 4.65673 4.71036 4.77381 4.83387 5.21041 5.28220 5.37353 5.41325 5.53731 5.80033 5.99694 6.40169 6.55207 7.07709 7.48824 8.05480 8.64935 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.047820 B = 0.006255 C = 0.005553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.385997 B = 4475.048631 C = 5041.121108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.000 4.000 3 C -0.052 4.052 4 C 0.286 3.714 5 N -0.458 5.458 6 C -0.037 4.037 7 C -0.114 4.114 8 C -0.064 4.064 9 C -0.131 4.131 10 C 0.465 3.535 11 O -0.621 6.621 12 N -0.552 5.552 13 C -0.332 4.332 14 H 0.084 0.916 15 C -0.007 4.007 16 N -0.909 5.909 17 Si 0.994 3.006 18 H -0.273 1.273 19 H -0.270 1.270 20 H -0.270 1.270 21 H 0.070 0.930 22 H 0.058 0.942 23 H 0.081 0.919 24 H 0.173 0.827 25 H 0.179 0.821 26 H 0.137 0.863 27 H 0.399 0.601 28 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.373 8.632 0.163 10.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.004 4.004 3 C -0.056 4.056 4 C -0.029 4.029 5 N -0.134 5.134 6 C -0.058 4.058 7 C -0.131 4.131 8 C -0.084 4.084 9 C -0.134 4.134 10 C 0.255 3.745 11 O -0.510 6.510 12 N -0.188 5.188 13 C -0.462 4.462 14 H 0.102 0.898 15 C -0.209 4.209 16 N -0.549 5.549 17 Si 0.817 3.183 18 H -0.198 1.198 19 H -0.195 1.195 20 H -0.195 1.195 21 H 0.089 0.911 22 H 0.077 0.923 23 H 0.100 0.900 24 H 0.190 0.810 25 H 0.197 0.803 26 H 0.154 0.846 27 H 0.235 0.765 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.851 9.957 0.208 11.077 hybrid contribution -0.012 -1.450 -0.026 1.450 sum 4.839 8.507 0.183 9.788 Atomic orbital electron populations 1.20980 0.90820 1.02136 1.03299 1.19949 0.96396 0.90656 0.93383 1.15836 0.93497 0.84773 1.11468 1.25600 0.92472 0.92344 0.92437 1.81231 1.09056 1.12441 1.10661 1.21663 0.90274 1.00742 0.93073 1.21388 1.02262 0.89763 0.99698 1.21829 0.91912 1.00753 0.93923 1.19768 0.94693 0.92216 1.06759 1.18400 0.87385 0.84416 0.84328 1.90532 1.15255 1.87351 1.57865 1.41861 1.10007 1.04698 1.62198 1.19787 0.93505 0.83834 1.49058 0.89797 1.26071 0.96536 1.02462 0.95818 1.69620 1.07088 1.29968 1.48197 0.84858 0.78114 0.76914 0.78410 1.19768 1.19517 1.19501 0.91122 0.92279 0.90027 0.80978 0.80337 0.84570 0.76547 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.07 8.42 71.24 0.60 -3.47 15 2 C 0.00 0.01 5.95 -19.32 -0.11 -0.11 15 3 C -0.05 -1.33 5.73 -21.40 -0.12 -1.45 15 4 C 0.29 7.72 13.69 88.33 1.21 8.93 15 5 N -0.46 -13.87 18.54 19.01 0.35 -13.52 15 6 C -0.04 -0.66 9.75 22.60 0.22 -0.44 15 7 C -0.11 -2.06 10.02 22.19 0.22 -1.84 15 8 C -0.06 -1.75 9.52 22.59 0.22 -1.53 15 9 C -0.13 -4.69 5.87 -20.12 -0.12 -4.81 15 10 C 0.46 21.90 7.65 86.76 0.66 22.56 15 11 O -0.62 -33.11 12.90 -4.01 -0.05 -33.16 15 12 N -0.55 -27.31 5.23 -309.71 -1.62 -28.93 15 13 C -0.33 -18.11 9.68 84.10 0.81 -17.29 15 14 H 0.08 4.88 7.15 -2.91 -0.02 4.86 15 15 C -0.01 -0.38 5.50 84.96 0.47 0.09 15 16 N -0.91 -46.20 13.05 21.68 0.28 -45.91 15 17 Si 0.99 40.94 29.55 68.60 2.03 42.97 15 18 H -0.27 -11.46 7.11 99.48 0.71 -10.76 15 19 H -0.27 -10.66 7.11 99.48 0.71 -9.95 15 20 H -0.27 -10.64 7.11 99.48 0.71 -9.94 15 21 H 0.07 2.52 8.14 -2.39 -0.02 2.50 15 22 H 0.06 1.84 6.86 -2.39 -0.02 1.82 15 23 H 0.08 3.36 5.84 -2.39 -0.01 3.35 15 24 H 0.17 1.77 8.06 -2.91 -0.02 1.75 15 25 H 0.18 1.78 8.06 -2.91 -0.02 1.76 15 26 H 0.14 3.68 6.44 -2.91 -0.02 3.66 15 27 H 0.40 18.27 5.95 -92.71 -0.55 17.72 15 28 H 0.28 13.29 8.31 -92.71 -0.77 12.52 15 Total: -1.00 -64.33 257.17 5.71 -58.62 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.66 Total: 19.30 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: 4.06 Total: 0.64 kcal Atomic # 7 Polarization: -87.38 SS G_CDS: -0.98 Total: -88.36 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -0.05 Total: -33.16 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -64.33 5.71 -58.62 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322689503.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.198 kcal (2) G-P(sol) polarization free energy of solvation -64.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds