Wall clock time and date at job start Sun Mar 29 2020 21:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42896 * 113.99906 * 2 1 4 4 C 1.50704 * 109.54387 * 63.12566 * 3 2 1 5 5 O 1.21215 * 119.99686 * 215.33005 * 4 3 2 6 6 O 1.34311 * 120.00078 * 35.32155 * 4 3 2 7 7 C 1.34921 * 117.00106 * 180.02562 * 6 4 3 8 8 H 1.08002 * 119.99907 * 0.02562 * 7 6 4 9 9 C 1.38745 * 119.99905 * 179.72650 * 7 6 4 10 10 N 1.31437 * 120.00331 * 0.27655 * 9 7 6 11 11 Si 1.86799 * 119.99887 * 180.27743 * 9 7 6 12 12 H 1.48501 * 109.47483 * 59.99962 * 11 9 7 13 13 H 1.48497 * 109.47356 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47247 * 299.99837 * 11 9 7 15 15 C 1.53180 * 109.62012 * 183.34412 * 3 2 1 16 16 C 1.53094 * 109.15737 * 62.92929 * 15 3 2 17 17 O 1.42905 * 109.41626 * 57.61137 * 16 15 3 18 18 C 1.42903 * 114.09657 * 298.83943 * 17 16 15 19 19 C 1.53088 * 109.41356 * 61.16062 * 18 17 16 20 20 H 1.09003 * 109.47535 * 306.54813 * 1 2 3 21 21 H 1.08995 * 109.47639 * 66.55030 * 1 2 3 22 22 H 1.08999 * 109.47065 * 186.54914 * 1 2 3 23 23 H 0.96998 * 120.00479 * 179.97438 * 10 9 7 24 24 H 1.08994 * 109.52501 * 182.83215 * 15 3 2 25 25 H 1.08996 * 109.52170 * 303.03230 * 15 3 2 26 26 H 1.08995 * 109.48672 * 297.62629 * 16 15 3 27 27 H 1.09004 * 109.48729 * 177.59878 * 16 15 3 28 28 H 1.08998 * 109.47955 * 301.17584 * 18 17 16 29 29 H 1.08997 * 109.48490 * 181.14371 * 18 17 16 30 30 H 1.09004 * 109.52069 * 182.48362 * 19 18 17 31 31 H 1.08994 * 109.52518 * 62.29373 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 1.6287 2.0271 1.2668 5 8 1.4272 3.2222 1.2463 6 8 1.5119 1.3460 2.4185 7 6 1.1671 2.0520 3.5154 8 1 0.9982 3.1162 3.4416 9 6 1.0234 1.4099 4.7369 10 7 1.2285 0.1147 4.8266 11 14 0.5385 2.3860 6.2539 12 1 -0.7815 3.0278 6.0286 13 1 0.4519 1.4740 7.4226 14 1 1.5592 3.4322 6.5165 15 6 3.5352 1.1895 -0.0842 16 6 3.9162 0.5259 -1.4102 17 8 3.3862 1.2917 -2.4941 18 6 1.9609 1.3945 -2.4938 19 6 1.5014 2.0929 -1.2114 20 1 -0.3634 0.6120 0.8256 21 1 -0.3634 0.4089 -0.9427 22 1 -0.3633 -1.0209 0.1172 23 1 1.1284 -0.3342 5.6806 24 1 3.9795 2.1835 -0.0334 25 1 3.9007 0.5832 0.7446 26 1 3.5055 -0.4831 -1.4431 27 1 5.0020 0.4793 -1.4947 28 1 1.5245 0.3968 -2.5408 29 1 1.6379 1.9736 -3.3589 30 1 0.4123 2.1329 -1.1886 31 1 1.9046 3.1051 -1.1834 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325724391.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:59 Heat of formation + Delta-G solvation = -170.221014 kcal Electronic energy + Delta-G solvation = -17200.809431 eV Core-core repulsion = 14255.162558 eV Total energy + Delta-G solvation = -2945.646873 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.103 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.26808 -38.39927 -36.71562 -35.23204 -32.20834 -32.11260 -31.01168 -26.73011 -25.99220 -24.59032 -23.37106 -21.17628 -19.28393 -17.78209 -17.18478 -16.44941 -15.86380 -15.32583 -15.10500 -15.02668 -14.42806 -14.29619 -13.76740 -13.44076 -12.72622 -12.52278 -12.32635 -12.13759 -11.65941 -11.34638 -11.14553 -11.10570 -10.62453 -10.50208 -10.42018 -10.34816 -9.82571 -9.63338 -9.52114 -8.69615 -8.60590 -6.43995 -4.12564 3.06470 3.15581 3.19617 3.38971 3.78786 3.98067 4.09484 4.45752 4.87269 4.96263 5.10689 5.19488 5.41133 5.53765 5.60754 5.62979 5.73756 5.79319 5.86307 5.99777 6.13138 6.16450 6.30725 6.38467 6.61687 7.30524 7.33700 7.45629 7.90654 8.64053 9.03442 9.81561 10.72675 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.046029 B = 0.007603 C = 0.007497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.163143 B = 3682.066256 C = 3733.851880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.141 3.859 4 C 0.372 3.628 5 O -0.554 6.554 6 O -0.196 6.196 7 C -0.388 4.388 8 H 0.094 0.906 9 C 0.045 3.955 10 N -0.858 5.858 11 Si 0.943 3.057 12 H -0.270 1.270 13 H -0.278 1.278 14 H -0.269 1.269 15 C -0.139 4.139 16 C 0.067 3.933 17 O -0.386 6.386 18 C 0.068 3.932 19 C -0.169 4.169 20 H 0.052 0.948 21 H 0.037 0.963 22 H 0.087 0.913 23 H 0.271 0.729 24 H 0.088 0.912 25 H 0.093 0.907 26 H 0.062 0.938 27 H 0.096 0.904 28 H 0.055 0.945 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.953 -1.039 -10.207 10.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.279 6.279 3 C 0.100 3.900 4 C 0.218 3.782 5 O -0.452 6.452 6 O -0.102 6.102 7 C -0.464 4.464 8 H 0.111 0.889 9 C -0.160 4.160 10 N -0.494 5.494 11 Si 0.767 3.233 12 H -0.195 1.195 13 H -0.203 1.203 14 H -0.194 1.194 15 C -0.176 4.176 16 C -0.009 4.009 17 O -0.304 6.304 18 C -0.008 4.008 19 C -0.207 4.207 20 H 0.071 0.929 21 H 0.056 0.944 22 H 0.106 0.894 23 H 0.081 0.919 24 H 0.106 0.894 25 H 0.112 0.888 26 H 0.080 0.920 27 H 0.114 0.886 28 H 0.074 0.926 29 H 0.112 0.888 30 H 0.098 0.902 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.119 -1.020 -10.156 10.268 hybrid contribution -0.724 0.613 1.166 1.503 sum 0.395 -0.408 -8.990 9.008 Atomic orbital electron populations 1.22790 0.80984 1.03087 0.99925 1.87927 1.20015 1.25405 1.94594 1.21170 0.95125 0.83419 0.90315 1.23744 0.80517 0.87005 0.86932 1.90553 1.51477 1.16437 1.86710 1.83966 1.71015 1.40184 1.14990 1.21219 1.47762 0.93576 0.83873 0.88853 1.25342 0.96346 0.96002 0.98332 1.69999 1.44880 1.08205 1.26293 0.85763 0.79446 0.78823 0.79267 1.19490 1.20273 1.19428 1.22175 0.91842 1.03554 1.00075 1.22544 0.98941 0.94470 0.84958 1.87871 1.20613 1.73882 1.48075 1.22500 0.81466 0.99982 0.96883 1.22624 1.02448 1.01381 0.94232 0.92936 0.94440 0.89444 0.91949 0.89356 0.88845 0.92003 0.88611 0.92627 0.88800 0.90186 0.88828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.13 101.05 1.02 1.52 16 2 O -0.36 -7.05 9.12 -48.89 -0.45 -7.50 16 3 C 0.14 2.79 0.68 -91.58 -0.06 2.73 16 4 C 0.37 9.42 5.50 36.01 0.20 9.62 16 5 O -0.55 -15.08 15.27 -19.06 -0.29 -15.37 16 6 O -0.20 -5.68 9.18 -25.83 -0.24 -5.92 16 7 C -0.39 -11.57 9.64 30.92 0.30 -11.27 16 8 H 0.09 2.80 6.86 -52.49 -0.36 2.44 16 9 C 0.04 1.27 5.49 -17.53 -0.10 1.17 16 10 N -0.86 -25.13 13.67 55.48 0.76 -24.38 16 11 Si 0.94 21.31 29.55 -169.99 -5.02 16.29 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 13 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 14 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 15 C -0.14 -2.42 5.13 -26.59 -0.14 -2.55 16 16 C 0.07 0.96 6.69 37.21 0.25 1.21 16 17 O -0.39 -5.81 10.77 -35.23 -0.38 -6.19 16 18 C 0.07 0.94 6.69 37.20 0.25 1.19 16 19 C -0.17 -2.82 4.14 -26.59 -0.11 -2.93 16 20 H 0.05 1.08 6.83 -51.93 -0.35 0.72 16 21 H 0.04 0.54 6.68 -51.93 -0.35 0.19 16 22 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 23 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 24 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 25 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 26 H 0.06 0.87 7.82 -51.93 -0.41 0.47 16 27 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.06 0.73 7.82 -51.93 -0.41 0.33 16 29 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.08 1.29 6.50 -51.93 -0.34 0.95 16 31 H 0.09 1.65 7.77 -51.93 -0.40 1.24 16 LS Contribution 262.28 15.07 3.95 3.95 Total: -1.00 -33.35 262.28 -3.92 -37.26 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -3.86 Total: 1.16 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 1.61 Total: 0.68 kcal Atomic # 7 Polarization: -25.13 SS G_CDS: 0.76 Total: -24.38 kcal Atomic # 8 Polarization: -33.62 SS G_CDS: -1.35 Total: -34.98 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -33.35 -3.92 -37.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325724391.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.956 kcal (2) G-P(sol) polarization free energy of solvation -33.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds