Wall clock time and date at job start Sun Mar 29 2020 21:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42896 * 113.99906 * 2 1 4 4 C 1.50704 * 109.54387 * 63.12566 * 3 2 1 5 5 O 1.21215 * 119.99686 * 215.33005 * 4 3 2 6 6 O 1.34311 * 120.00078 * 35.32155 * 4 3 2 7 7 C 1.34921 * 117.00106 * 180.02562 * 6 4 3 8 8 H 1.08002 * 119.99907 * 0.02562 * 7 6 4 9 9 C 1.38745 * 119.99905 * 179.72650 * 7 6 4 10 10 N 1.31437 * 120.00331 * 0.27655 * 9 7 6 11 11 Si 1.86799 * 119.99887 * 180.27743 * 9 7 6 12 12 H 1.48501 * 109.47483 * 59.99962 * 11 9 7 13 13 H 1.48497 * 109.47356 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47247 * 299.99837 * 11 9 7 15 15 C 1.53180 * 109.62012 * 183.34412 * 3 2 1 16 16 C 1.53094 * 109.15737 * 62.92929 * 15 3 2 17 17 O 1.42905 * 109.41626 * 57.61137 * 16 15 3 18 18 C 1.42903 * 114.09657 * 298.83943 * 17 16 15 19 19 C 1.53088 * 109.41356 * 61.16062 * 18 17 16 20 20 H 1.09003 * 109.47535 * 306.54813 * 1 2 3 21 21 H 1.08995 * 109.47639 * 66.55030 * 1 2 3 22 22 H 1.08999 * 109.47065 * 186.54914 * 1 2 3 23 23 H 0.96998 * 120.00479 * 179.97438 * 10 9 7 24 24 H 1.08994 * 109.52501 * 182.83215 * 15 3 2 25 25 H 1.08996 * 109.52170 * 303.03230 * 15 3 2 26 26 H 1.08995 * 109.48672 * 297.62629 * 16 15 3 27 27 H 1.09004 * 109.48729 * 177.59878 * 16 15 3 28 28 H 1.08998 * 109.47955 * 301.17584 * 18 17 16 29 29 H 1.08997 * 109.48490 * 181.14371 * 18 17 16 30 30 H 1.09004 * 109.52069 * 182.48362 * 19 18 17 31 31 H 1.08994 * 109.52518 * 62.29373 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 1.6287 2.0271 1.2668 5 8 1.4272 3.2222 1.2463 6 8 1.5119 1.3460 2.4185 7 6 1.1671 2.0520 3.5154 8 1 0.9982 3.1162 3.4416 9 6 1.0234 1.4099 4.7369 10 7 1.2285 0.1147 4.8266 11 14 0.5385 2.3860 6.2539 12 1 -0.7815 3.0278 6.0286 13 1 0.4519 1.4740 7.4226 14 1 1.5592 3.4322 6.5165 15 6 3.5352 1.1895 -0.0842 16 6 3.9162 0.5259 -1.4102 17 8 3.3862 1.2917 -2.4941 18 6 1.9609 1.3945 -2.4938 19 6 1.5014 2.0929 -1.2114 20 1 -0.3634 0.6120 0.8256 21 1 -0.3634 0.4089 -0.9427 22 1 -0.3633 -1.0209 0.1172 23 1 1.1284 -0.3342 5.6806 24 1 3.9795 2.1835 -0.0334 25 1 3.9007 0.5832 0.7446 26 1 3.5055 -0.4831 -1.4431 27 1 5.0020 0.4793 -1.4947 28 1 1.5245 0.3968 -2.5408 29 1 1.6379 1.9736 -3.3589 30 1 0.4123 2.1329 -1.1886 31 1 1.9046 3.1051 -1.1834 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325724391.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:58 Heat of formation + Delta-G solvation = -194.127382 kcal Electronic energy + Delta-G solvation = -17201.846089 eV Core-core repulsion = 14255.162558 eV Total energy + Delta-G solvation = -2946.683531 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.103 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.92873 -40.14236 -38.13887 -37.34609 -34.36091 -33.58692 -32.26089 -28.33880 -27.76243 -26.30552 -24.64645 -22.84280 -20.85646 -19.95523 -19.06859 -17.85382 -17.21981 -17.06832 -16.78022 -16.45565 -16.20243 -15.85909 -15.36588 -15.22466 -14.19524 -14.04329 -13.81103 -13.63612 -13.42816 -13.18311 -12.65701 -12.48720 -12.39559 -12.21275 -12.16946 -11.93016 -11.65086 -11.20857 -10.80907 -10.75358 -10.42953 -8.58825 -6.40372 1.18325 1.29619 1.45886 1.51996 2.01057 2.42742 2.66098 2.90720 2.96647 3.46710 3.59780 3.89316 4.18880 4.21541 4.31179 4.36438 4.43035 4.52620 4.59871 4.69256 4.73882 4.76487 4.94567 4.97219 5.06863 5.08642 5.75325 5.91681 6.17413 6.53657 6.84285 7.67971 8.60318 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.046029 B = 0.007603 C = 0.007497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.163143 B = 3682.066256 C = 3733.851880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.367 6.367 3 C 0.141 3.859 4 C 0.370 3.630 5 O -0.579 6.579 6 O -0.225 6.225 7 C -0.429 4.429 8 H 0.079 0.921 9 C 0.000 4.000 10 N -0.894 5.894 11 Si 1.016 2.984 12 H -0.261 1.261 13 H -0.257 1.257 14 H -0.262 1.262 15 C -0.141 4.141 16 C 0.076 3.924 17 O -0.390 6.390 18 C 0.073 3.927 19 C -0.164 4.164 20 H 0.012 0.988 21 H 0.073 0.927 22 H 0.109 0.891 23 H 0.280 0.720 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.126 0.874 28 H 0.068 0.932 29 H 0.126 0.874 30 H 0.084 0.916 31 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.911 -1.307 -11.141 11.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.286 6.286 3 C 0.100 3.900 4 C 0.217 3.783 5 O -0.478 6.478 6 O -0.132 6.132 7 C -0.505 4.505 8 H 0.097 0.903 9 C -0.201 4.201 10 N -0.531 5.531 11 Si 0.834 3.166 12 H -0.186 1.186 13 H -0.180 1.180 14 H -0.186 1.186 15 C -0.179 4.179 16 C 0.000 4.000 17 O -0.309 6.309 18 C -0.003 4.003 19 C -0.202 4.202 20 H 0.030 0.970 21 H 0.092 0.908 22 H 0.127 0.873 23 H 0.090 0.910 24 H 0.103 0.897 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.143 0.857 28 H 0.086 0.914 29 H 0.144 0.856 30 H 0.102 0.898 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.082 -1.300 -11.118 11.246 hybrid contribution -0.723 0.696 1.386 1.712 sum 0.358 -0.604 -9.732 9.757 Atomic orbital electron populations 1.22953 0.79972 1.04011 1.00150 1.87916 1.21168 1.25072 1.94441 1.21402 0.96797 0.83556 0.88279 1.25118 0.78307 0.87145 0.87700 1.90509 1.52190 1.17863 1.87250 1.83992 1.72080 1.41075 1.16019 1.21423 1.50387 0.93402 0.85291 0.90333 1.26549 0.95193 0.97226 1.01142 1.70080 1.45249 1.09889 1.27840 0.84718 0.79366 0.77607 0.74870 1.18581 1.18042 1.18615 1.22257 0.90020 1.03614 1.01991 1.22598 1.00751 0.93986 0.82694 1.87881 1.21250 1.73955 1.47811 1.22654 0.80954 1.00782 0.95949 1.22658 1.02673 1.00576 0.94303 0.96964 0.90834 0.87263 0.91023 0.89736 0.90168 0.91411 0.85652 0.91385 0.85589 0.89785 0.90069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.85 10.13 113.37 1.15 2.00 16 2 O -0.37 -14.15 9.12 -135.92 -1.24 -15.39 16 3 C 0.14 5.58 0.68 -11.42 -0.01 5.57 16 4 C 0.37 19.41 5.50 71.24 0.39 19.80 16 5 O -0.58 -32.74 15.27 20.76 0.32 -32.43 16 6 O -0.22 -13.64 9.18 19.77 0.18 -13.45 16 7 C -0.43 -26.62 9.64 67.94 0.66 -25.96 16 8 H 0.08 4.94 6.86 -2.91 -0.02 4.92 16 9 C 0.00 0.02 5.49 84.87 0.47 0.48 16 10 N -0.89 -53.26 13.67 21.62 0.30 -52.96 16 11 Si 1.02 43.70 29.55 68.60 2.03 45.73 16 12 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 13 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 14 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 15 C -0.14 -4.86 5.13 30.69 0.16 -4.70 16 16 C 0.08 1.99 6.69 72.01 0.48 2.47 16 17 O -0.39 -10.51 10.77 -148.98 -1.60 -12.11 16 18 C 0.07 1.78 6.69 72.01 0.48 2.26 16 19 C -0.16 -5.27 4.14 30.68 0.13 -5.15 16 20 H 0.01 0.50 6.83 -2.39 -0.02 0.48 16 21 H 0.07 1.95 6.68 -2.39 -0.02 1.93 16 22 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 23 H 0.28 15.10 8.31 -92.71 -0.77 14.33 16 24 H 0.08 2.92 8.14 -2.39 -0.02 2.91 16 25 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 26 H 0.07 1.72 7.82 -2.39 -0.02 1.70 16 27 H 0.13 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.07 1.53 7.82 -2.39 -0.02 1.51 16 29 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.08 2.59 6.50 -2.38 -0.02 2.58 16 31 H 0.08 2.81 7.77 -2.39 -0.02 2.79 16 Total: -1.00 -74.44 262.28 5.01 -69.43 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 1.13 Total: 14.42 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: 3.90 Total: -3.23 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: 0.30 Total: -52.96 kcal Atomic # 8 Polarization: -71.04 SS G_CDS: -2.35 Total: -73.38 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -74.44 5.01 -69.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325724391.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.695 kcal (2) G-P(sol) polarization free energy of solvation -74.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds