Wall clock time and date at job start Sun Mar 29 2020 22:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99661 * 2 1 4 4 H 1.48499 * 109.47145 * 269.99301 * 3 2 1 5 5 H 1.48496 * 109.47547 * 29.99797 * 3 2 1 6 6 H 1.48499 * 109.47030 * 149.99701 * 3 2 1 7 7 C 1.37870 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00310 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.47147 * 179.97438 * 10 9 7 12 12 C 1.81396 * 103.00203 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47258 * 180.02562 * 12 11 10 14 14 C 1.53008 * 109.46838 * 179.97438 * 13 12 11 15 15 H 1.08993 * 110.80441 * 308.62592 * 14 13 12 16 16 C 1.54815 * 110.90342 * 185.00078 * 14 13 12 17 17 C 1.54101 * 104.18611 * 220.92377 * 16 14 13 18 18 O 1.43741 * 107.29318 * 357.96954 * 17 16 14 19 19 C 1.44379 * 106.97708 * 26.51419 * 18 17 16 20 20 H 0.96999 * 120.00061 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 22 22 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 23 23 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 24 24 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 25 25 H 1.09002 * 109.46785 * 300.00128 * 12 11 10 26 26 H 1.09001 * 109.47521 * 59.99566 * 12 11 10 27 27 H 1.08998 * 109.46794 * 299.99706 * 13 12 11 28 28 H 1.08995 * 109.46926 * 60.00162 * 13 12 11 29 29 H 1.09001 * 110.48660 * 339.59792 * 16 14 13 30 30 H 1.09000 * 110.48724 * 102.11428 * 16 14 13 31 31 H 1.08996 * 109.87911 * 117.39205 * 17 16 14 32 32 H 1.08992 * 109.87601 * 238.39655 * 17 16 14 33 33 H 1.09005 * 110.62119 * 201.43706 * 19 18 17 34 34 H 1.09005 * 110.62004 * 78.44089 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 16 5.8356 -2.6364 0.0009 12 6 6.2438 -4.4038 0.0016 13 6 7.7640 -4.5762 0.0022 14 6 8.1082 -6.0671 0.0034 15 1 7.5753 -6.5868 0.7996 16 6 9.6362 -6.2811 0.1302 17 6 9.9387 -7.4327 -0.8482 18 8 8.6868 -7.8477 -1.4198 19 6 7.8041 -6.7060 -1.3755 20 1 -0.4850 0.8400 -0.0004 21 1 3.8752 -0.6803 -0.8889 22 1 3.8746 -0.6798 0.8911 23 1 3.6580 -3.1504 0.8908 24 1 3.6586 -3.1501 -0.8892 25 1 5.8248 -4.8731 0.8918 26 1 5.8248 -4.8739 -0.8882 27 1 8.1832 -4.1069 -0.8877 28 1 8.1825 -4.1064 0.8922 29 1 10.1734 -5.3795 -0.1640 30 1 9.8984 -6.5649 1.1494 31 1 10.6080 -7.0845 -1.6348 32 1 10.3975 -8.2634 -0.3122 33 1 6.7628 -7.0235 -1.4302 34 1 8.0368 -6.0094 -2.1811 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331489948.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:09 Heat of formation + Delta-G solvation = -75.029350 kcal Electronic energy + Delta-G solvation = -13468.611591 eV Core-core repulsion = 11105.678504 eV Total energy + Delta-G solvation = -2362.933088 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.71338 -34.88360 -33.71927 -31.24407 -30.99604 -28.56448 -25.66972 -24.10339 -22.41858 -20.87205 -20.43556 -17.00627 -16.84740 -16.13856 -15.66957 -15.42969 -14.72248 -14.36381 -14.00428 -13.55572 -13.38610 -13.09983 -12.76925 -12.59990 -11.81884 -11.76808 -11.65503 -11.26287 -11.16245 -10.99633 -10.76166 -10.31086 -10.04553 -9.94282 -9.79441 -9.55835 -9.19323 -8.60610 -7.28538 -6.11437 -4.11559 2.06672 3.11047 3.29347 3.36581 3.42004 3.67658 4.20594 4.40657 4.45099 4.60770 4.76743 4.95667 4.99964 5.09826 5.22608 5.26192 5.42123 5.45750 5.50797 5.56142 5.66219 5.72609 5.86675 5.91194 5.99544 6.04269 6.52859 6.58617 7.10287 7.22623 7.65159 8.42098 8.90112 9.49285 11.01343 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.072144 B = 0.003955 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.017613 B = 7078.413144 C = 7313.667732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.071 3.929 3 Si 0.879 3.121 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.522 4.522 8 H 0.073 0.927 9 C 0.003 3.997 10 C -0.048 4.048 11 S -0.300 6.300 12 C -0.087 4.087 13 C -0.091 4.091 14 C -0.118 4.118 15 H 0.088 0.912 16 C -0.152 4.152 17 C 0.046 3.954 18 O -0.381 6.381 19 C 0.049 3.951 20 H 0.265 0.735 21 H 0.021 0.979 22 H 0.026 0.974 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.738 -11.990 -0.235 22.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.706 3.294 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.561 4.561 8 H 0.092 0.908 9 C -0.036 4.036 10 C -0.196 4.196 11 S -0.072 6.072 12 C -0.235 4.235 13 C -0.129 4.129 14 C -0.138 4.138 15 H 0.106 0.894 16 C -0.190 4.190 17 C -0.031 4.031 18 O -0.300 6.300 19 C -0.028 4.028 20 H 0.075 0.925 21 H 0.040 0.960 22 H 0.044 0.956 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.112 0.888 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 19.227 -11.220 -0.317 22.264 hybrid contribution -0.500 0.088 0.099 0.518 sum 18.727 -11.132 -0.218 21.787 Atomic orbital electron populations 1.69898 1.06282 1.27131 1.50506 1.24966 0.94748 0.99195 0.94225 0.86775 0.80468 0.83404 0.78756 1.20071 1.21183 1.18785 1.20970 0.88515 0.94758 1.51885 0.90845 1.19369 0.97094 0.89625 0.97541 1.23451 0.87760 1.04486 1.03930 1.86808 1.13033 1.09243 1.98139 1.23301 0.99218 0.96398 1.04617 1.21290 0.93649 0.94309 1.03660 1.22783 0.95807 0.96534 0.98691 0.89396 1.23002 0.96052 0.99275 1.00695 1.23137 0.87169 0.97232 0.95523 1.88867 1.23807 1.34500 1.82819 1.23715 0.95143 0.87867 0.96063 0.92520 0.96027 0.95584 0.90806 0.90820 0.90379 0.90430 0.90745 0.90574 0.90333 0.90366 0.92465 0.90010 0.88812 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.57 13.96 55.43 0.77 -26.79 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 7 C -0.52 -14.81 9.66 -34.44 -0.33 -15.15 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C 0.00 0.06 4.05 -27.88 -0.11 -0.05 16 10 C -0.05 -0.97 5.88 37.16 0.22 -0.76 16 11 S -0.30 -5.17 21.74 -107.50 -2.34 -7.51 16 12 C -0.09 -1.09 5.84 37.16 0.22 -0.87 16 13 C -0.09 -0.92 4.62 -26.73 -0.12 -1.04 16 14 C -0.12 -1.04 3.10 -88.61 -0.27 -1.31 16 15 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 16 C -0.15 -1.15 6.60 -25.20 -0.17 -1.31 16 17 C 0.05 0.38 7.70 37.73 0.29 0.67 16 18 O -0.38 -4.22 11.52 -35.23 -0.41 -4.63 16 19 C 0.05 0.46 6.63 38.21 0.25 0.72 16 20 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 21 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 22 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 23 H 0.07 1.45 8.14 -51.92 -0.42 1.03 16 24 H 0.07 1.44 8.14 -51.92 -0.42 1.02 16 25 H 0.08 0.94 8.14 -51.92 -0.42 0.52 16 26 H 0.08 0.92 7.73 -51.92 -0.40 0.52 16 27 H 0.07 0.76 7.98 -51.93 -0.41 0.35 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.55 7.86 -51.93 -0.41 0.14 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.59 7.93 -51.93 -0.41 0.18 16 LS Contribution 290.81 15.07 4.38 4.38 Total: -1.00 -30.68 290.81 -8.18 -38.86 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -5.79 Total: -4.27 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -0.13 Total: -17.14 kcal Atomic # 7 Polarization: -27.57 SS G_CDS: 0.77 Total: -26.79 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: -0.41 Total: -4.63 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Atomic # 16 Polarization: -5.17 SS G_CDS: -2.34 Total: -7.51 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.68 -8.18 -38.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331489948.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.168 kcal (2) G-P(sol) polarization free energy of solvation -30.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds