Wall clock time and date at job start Sun Mar 29 2020 22:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99661 * 2 1 4 4 H 1.48499 * 109.47145 * 269.99301 * 3 2 1 5 5 H 1.48496 * 109.47547 * 29.99797 * 3 2 1 6 6 H 1.48499 * 109.47030 * 149.99701 * 3 2 1 7 7 C 1.37870 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00310 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.47147 * 179.97438 * 10 9 7 12 12 C 1.81396 * 103.00203 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47258 * 180.02562 * 12 11 10 14 14 C 1.53008 * 109.46838 * 179.97438 * 13 12 11 15 15 H 1.08993 * 110.80441 * 308.62592 * 14 13 12 16 16 C 1.54815 * 110.90342 * 185.00078 * 14 13 12 17 17 C 1.54101 * 104.18611 * 220.92377 * 16 14 13 18 18 O 1.43741 * 107.29318 * 357.96954 * 17 16 14 19 19 C 1.44379 * 106.97708 * 26.51419 * 18 17 16 20 20 H 0.96999 * 120.00061 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 22 22 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 23 23 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 24 24 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 25 25 H 1.09002 * 109.46785 * 300.00128 * 12 11 10 26 26 H 1.09001 * 109.47521 * 59.99566 * 12 11 10 27 27 H 1.08998 * 109.46794 * 299.99706 * 13 12 11 28 28 H 1.08995 * 109.46926 * 60.00162 * 13 12 11 29 29 H 1.09001 * 110.48660 * 339.59792 * 16 14 13 30 30 H 1.09000 * 110.48724 * 102.11428 * 16 14 13 31 31 H 1.08996 * 109.87911 * 117.39205 * 17 16 14 32 32 H 1.08992 * 109.87601 * 238.39655 * 17 16 14 33 33 H 1.09005 * 110.62119 * 201.43706 * 19 18 17 34 34 H 1.09005 * 110.62004 * 78.44089 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 16 5.8356 -2.6364 0.0009 12 6 6.2438 -4.4038 0.0016 13 6 7.7640 -4.5762 0.0022 14 6 8.1082 -6.0671 0.0034 15 1 7.5753 -6.5868 0.7996 16 6 9.6362 -6.2811 0.1302 17 6 9.9387 -7.4327 -0.8482 18 8 8.6868 -7.8477 -1.4198 19 6 7.8041 -6.7060 -1.3755 20 1 -0.4850 0.8400 -0.0004 21 1 3.8752 -0.6803 -0.8889 22 1 3.8746 -0.6798 0.8911 23 1 3.6580 -3.1504 0.8908 24 1 3.6586 -3.1501 -0.8892 25 1 5.8248 -4.8731 0.8918 26 1 5.8248 -4.8739 -0.8882 27 1 8.1832 -4.1069 -0.8877 28 1 8.1825 -4.1064 0.8922 29 1 10.1734 -5.3795 -0.1640 30 1 9.8984 -6.5649 1.1494 31 1 10.6080 -7.0845 -1.6348 32 1 10.3975 -8.2634 -0.3122 33 1 6.7628 -7.0235 -1.4302 34 1 8.0368 -6.0094 -2.1811 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331489948.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:09 Heat of formation + Delta-G solvation = -93.270632 kcal Electronic energy + Delta-G solvation = -13469.402593 eV Core-core repulsion = 11105.678504 eV Total energy + Delta-G solvation = -2363.724089 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.41664 -35.78936 -35.68156 -33.29405 -31.72023 -29.32981 -27.61427 -25.02744 -23.24312 -22.49253 -21.32200 -19.14759 -17.60124 -17.00470 -16.63561 -16.44545 -16.41868 -15.80358 -15.29118 -14.85273 -14.63065 -14.31109 -14.05321 -13.71372 -13.40686 -13.09131 -12.63445 -12.48537 -12.28397 -12.09188 -11.88132 -11.71529 -11.67095 -11.46054 -11.27131 -10.84132 -10.81454 -10.64405 -8.65317 -8.34577 -6.40439 0.75903 1.35060 1.36461 1.49018 1.73331 2.32937 3.00271 3.00559 3.51578 3.74165 3.93514 4.05939 4.14034 4.19866 4.24745 4.27934 4.38253 4.50015 4.63794 4.75853 4.78235 4.85207 4.87191 5.00247 5.00771 5.15609 5.17359 5.29607 5.30436 5.52447 5.91656 6.17781 6.65404 7.24432 8.81568 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.072144 B = 0.003955 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.017613 B = 7078.413144 C = 7313.667732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.011 3.989 3 Si 0.948 3.052 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.251 1.251 7 C -0.534 4.534 8 H 0.039 0.961 9 C 0.008 3.992 10 C -0.047 4.047 11 S -0.313 6.313 12 C -0.076 4.076 13 C -0.082 4.082 14 C -0.111 4.111 15 H 0.090 0.910 16 C -0.148 4.148 17 C 0.040 3.960 18 O -0.406 6.406 19 C 0.044 3.956 20 H 0.269 0.731 21 H 0.022 0.978 22 H 0.024 0.976 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.111 -11.911 -0.034 24.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.187 4.187 3 Si 0.771 3.229 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.175 1.175 7 C -0.573 4.573 8 H 0.057 0.943 9 C -0.031 4.031 10 C -0.196 4.196 11 S -0.085 6.085 12 C -0.224 4.224 13 C -0.120 4.120 14 C -0.132 4.132 15 H 0.108 0.892 16 C -0.185 4.185 17 C -0.037 4.037 18 O -0.326 6.326 19 C -0.032 4.032 20 H 0.078 0.922 21 H 0.041 0.959 22 H 0.042 0.958 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 21.606 -11.148 -0.116 24.313 hybrid contribution -1.218 -0.079 0.028 1.221 sum 20.388 -11.227 -0.089 23.275 Atomic orbital electron populations 1.70037 1.08150 1.28417 1.51941 1.25926 0.95609 1.03356 0.93787 0.85686 0.79417 0.78399 0.79395 1.18968 1.20468 1.17452 1.21297 0.91022 0.93583 1.51397 0.94313 1.19211 0.94257 0.92382 0.97216 1.23147 0.90714 1.01780 1.03911 1.86735 1.09541 1.13983 1.98202 1.23450 1.01030 0.92400 1.05492 1.21231 0.91600 0.95330 1.03876 1.22699 0.96938 0.95196 0.98319 0.89179 1.22999 0.94895 0.99371 1.01284 1.23321 0.86342 0.98013 0.96003 1.88842 1.25020 1.35408 1.83282 1.23788 0.95132 0.87734 0.96583 0.92193 0.95934 0.95802 0.90917 0.90894 0.89561 0.89603 0.90642 0.90265 0.89564 0.89130 0.91764 0.88883 0.88791 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.06 13.96 21.44 0.30 -58.76 16 2 C 0.01 0.65 5.47 84.65 0.46 1.12 16 3 Si 0.95 44.60 27.47 68.60 1.88 46.48 16 4 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.25 -11.20 6.54 99.48 0.65 -10.55 16 7 C -0.53 -30.88 9.66 25.60 0.25 -30.63 16 8 H 0.04 2.43 7.99 -2.91 -0.02 2.41 16 9 C 0.01 0.38 4.05 29.85 0.12 0.50 16 10 C -0.05 -1.88 5.88 71.98 0.42 -1.46 16 11 S -0.31 -10.21 21.74 -56.49 -1.23 -11.44 16 12 C -0.08 -1.71 5.84 71.98 0.42 -1.29 16 13 C -0.08 -1.43 4.62 30.60 0.14 -1.29 16 14 C -0.11 -1.67 3.10 -9.49 -0.03 -1.70 16 15 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 16 C -0.15 -1.80 6.60 31.59 0.21 -1.60 16 17 C 0.04 0.56 7.70 72.35 0.56 1.12 16 18 O -0.41 -8.35 11.52 -148.98 -1.72 -10.06 16 19 C 0.04 0.76 6.63 72.66 0.48 1.24 16 20 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 21 H 0.02 1.07 7.57 -2.39 -0.02 1.05 16 22 H 0.02 1.15 7.20 -2.39 -0.02 1.13 16 23 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 24 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 25 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.09 1.84 7.73 -2.39 -0.02 1.82 16 27 H 0.07 1.34 7.98 -2.39 -0.02 1.32 16 28 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.09 0.94 7.86 -2.39 -0.02 0.92 16 30 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.07 1.10 7.93 -2.38 -0.02 1.08 16 Total: -1.00 -65.83 290.81 3.26 -62.57 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: 0.99 Total: 5.21 kcal Atomic # 6 Polarization: -37.03 SS G_CDS: 3.03 Total: -33.99 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: 0.30 Total: -58.76 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -1.72 Total: -10.06 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.88 Total: 46.48 kcal Atomic # 16 Polarization: -10.21 SS G_CDS: -1.23 Total: -11.44 kcal Total: -65.83 3.26 -62.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331489948.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.700 kcal (2) G-P(sol) polarization free energy of solvation -65.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds