Wall clock time and date at job start Sun Mar 29 2020 22:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48494 * 109.47225 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00450 * 3 2 1 6 6 H 1.48498 * 109.47306 * 239.99734 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47525 * 180.02562 * 9 7 2 11 11 S 1.81402 * 109.47096 * 179.97438 * 10 9 7 12 12 C 1.81398 * 102.99878 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47497 * 180.02562 * 12 11 10 14 14 C 1.52993 * 109.47588 * 180.02562 * 13 12 11 15 15 H 1.08999 * 110.75189 * 57.01499 * 14 13 12 16 16 C 1.55300 * 110.84849 * 180.71446 * 14 13 12 17 17 C 1.54948 * 100.94363 * 152.32193 * 16 14 13 18 18 O 1.43644 * 105.13683 * 323.55836 * 17 16 14 19 19 C 1.43240 * 109.96994 * 24.42359 * 18 17 16 20 20 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 21 21 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 22 22 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 23 23 H 1.08995 * 109.46838 * 299.99933 * 10 9 7 24 24 H 1.09001 * 109.47054 * 59.99908 * 10 9 7 25 25 H 1.08996 * 109.47487 * 300.00179 * 12 11 10 26 26 H 1.09004 * 109.47110 * 60.00192 * 12 11 10 27 27 H 1.09004 * 109.46602 * 300.00176 * 13 12 11 28 28 H 1.08996 * 109.47077 * 59.99623 * 13 12 11 29 29 H 1.09003 * 111.12710 * 270.24174 * 16 14 13 30 30 H 1.09000 * 111.12523 * 34.40510 * 16 14 13 31 31 H 1.09002 * 110.31323 * 204.63769 * 17 16 14 32 32 H 1.09001 * 110.30979 * 82.47040 * 17 16 14 33 33 H 1.09005 * 109.82800 * 238.77731 * 19 18 17 34 34 H 1.09001 * 109.90470 * 117.84745 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6966 -1.2124 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 6 2.2455 -3.6620 0.0183 11 16 1.3385 -5.2330 0.0271 12 6 2.6652 -6.4700 0.0326 13 6 2.0546 -7.8729 0.0397 14 6 3.1735 -8.9162 0.0450 15 1 3.8344 -8.7694 0.8992 16 6 2.5881 -10.3546 0.0341 17 6 3.7310 -11.1321 -0.6660 18 8 4.2469 -10.2291 -1.6568 19 6 3.9684 -8.8761 -1.2779 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6248 -2.5524 0.9029 22 1 0.6241 -2.5613 -0.8770 23 1 2.8721 -3.6088 -0.8720 24 1 2.8721 -3.5996 0.9080 25 1 3.2808 -6.3467 -0.8584 26 1 3.2820 -6.3374 0.9215 27 1 1.4388 -7.9965 0.9306 28 1 1.4380 -8.0052 -0.8493 29 1 2.4274 -10.7210 1.0481 30 1 1.6679 -10.3998 -0.5484 31 1 3.3406 -12.0322 -1.1410 32 1 4.5089 -11.3897 0.0527 33 1 3.3741 -8.3902 -2.0518 34 1 4.9016 -8.3319 -1.1321 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331489949.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:11 Heat of formation + Delta-G solvation = -82.511126 kcal Electronic energy + Delta-G solvation = -13470.704026 eV Core-core repulsion = 11107.446504 eV Total energy + Delta-G solvation = -2363.257522 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.73740 -34.90876 -34.05245 -31.03338 -30.69810 -28.57203 -24.93274 -24.04476 -22.41717 -21.45194 -20.49776 -17.10122 -16.83855 -16.39322 -15.55827 -15.16931 -14.70770 -13.98548 -13.76463 -13.72522 -13.53261 -13.32010 -12.74310 -12.39027 -11.99886 -11.70014 -11.66197 -11.05555 -10.97399 -10.82560 -10.76806 -10.33798 -10.27683 -10.01117 -9.77900 -9.51644 -8.59963 -8.39058 -7.25911 -6.42399 -4.13466 2.08448 3.13586 3.41536 3.43270 3.61582 3.62245 4.12033 4.42923 4.51362 4.60094 4.84481 4.92090 4.97486 5.08605 5.26273 5.35210 5.40972 5.42442 5.50612 5.59076 5.62532 5.75677 5.86711 5.91818 6.03267 6.04243 6.56763 6.72208 7.25626 7.35423 8.06447 8.37000 8.79441 9.59019 10.98089 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.072607 B = 0.003778 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.542695 B = 7409.718788 C = 7656.092123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.018 3.982 3 Si 1.072 2.928 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.603 4.603 8 H 0.051 0.949 9 C 0.024 3.976 10 C -0.050 4.050 11 S -0.296 6.296 12 C -0.089 4.089 13 C -0.090 4.090 14 C -0.118 4.118 15 H 0.087 0.913 16 C -0.152 4.152 17 C 0.050 3.950 18 O -0.387 6.387 19 C 0.052 3.948 20 H 0.270 0.730 21 H 0.017 0.983 22 H 0.017 0.983 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.731 -19.584 0.534 20.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.187 4.187 3 Si 0.900 3.100 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.643 4.643 8 H 0.069 0.931 9 C -0.014 4.014 10 C -0.197 4.197 11 S -0.068 6.068 12 C -0.238 4.238 13 C -0.128 4.128 14 C -0.139 4.139 15 H 0.105 0.895 16 C -0.190 4.190 17 C -0.026 4.026 18 O -0.306 6.306 19 C -0.024 4.024 20 H 0.081 0.919 21 H 0.035 0.965 22 H 0.036 0.964 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.545 -18.167 0.349 18.997 hybrid contribution 1.478 -1.394 0.259 2.048 sum 7.023 -19.561 0.609 20.792 Atomic orbital electron populations 1.70771 1.06879 1.30795 1.45919 1.25902 0.96530 1.02717 0.93554 0.83505 0.74866 0.75118 0.76560 1.20623 1.21365 1.21348 1.21936 0.94276 0.91315 1.56787 0.93111 1.19026 0.94070 0.91070 0.97244 1.23511 1.00979 0.91967 1.03290 1.86877 1.17979 1.03816 1.98098 1.23310 0.99649 0.96356 1.04455 1.21281 0.96848 0.90909 1.03794 1.22774 0.97551 0.94977 0.98573 0.89498 1.23329 0.99199 0.94391 1.02052 1.23365 0.94837 0.93440 0.90968 1.88400 1.80211 1.15754 1.46275 1.23287 0.99296 0.83898 0.95945 0.91923 0.96456 0.96434 0.91261 0.91290 0.90513 0.90534 0.90509 0.90628 0.89771 0.90009 0.89800 0.92268 0.90789 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.07 13.65 55.43 0.76 -27.31 16 2 C 0.02 0.51 5.46 -17.82 -0.10 0.41 16 3 Si 1.07 25.18 29.90 -169.99 -5.08 20.10 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.60 -17.28 9.11 -34.44 -0.31 -17.59 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 9 C 0.02 0.64 4.29 -27.88 -0.12 0.52 16 10 C -0.05 -1.06 5.88 37.16 0.22 -0.84 16 11 S -0.30 -5.42 21.74 -107.50 -2.34 -7.76 16 12 C -0.09 -1.18 5.79 37.16 0.22 -0.97 16 13 C -0.09 -0.97 4.61 -26.73 -0.12 -1.09 16 14 C -0.12 -1.07 3.03 -88.68 -0.27 -1.34 16 15 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 16 C -0.15 -1.17 6.62 -24.48 -0.16 -1.33 16 17 C 0.05 0.42 7.78 38.19 0.30 0.71 16 18 O -0.39 -4.44 11.36 -35.23 -0.40 -4.84 16 19 C 0.05 0.53 6.57 37.88 0.25 0.78 16 20 H 0.27 8.37 7.22 -40.82 -0.29 8.07 16 21 H 0.02 0.48 8.01 -51.92 -0.42 0.06 16 22 H 0.02 0.48 8.00 -51.93 -0.42 0.07 16 23 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 24 H 0.07 1.42 8.14 -51.92 -0.42 1.00 16 25 H 0.08 0.97 7.48 -51.93 -0.39 0.58 16 26 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.08 0.85 8.07 -51.93 -0.42 0.43 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.63 8.04 -51.93 -0.42 0.22 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.78 7.73 -51.93 -0.40 0.38 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 292.68 15.07 4.41 4.41 Total: -1.00 -31.23 292.68 -8.52 -39.75 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -5.76 Total: -3.62 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: -0.11 Total: -20.73 kcal Atomic # 7 Polarization: -28.07 SS G_CDS: 0.76 Total: -27.31 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: -0.40 Total: -4.84 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -5.08 Total: 20.10 kcal Atomic # 16 Polarization: -5.42 SS G_CDS: -2.34 Total: -7.76 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.23 -8.52 -39.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331489949.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.765 kcal (2) G-P(sol) polarization free energy of solvation -31.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds