Wall clock time and date at job start Sun Mar 29 2020 22:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48494 * 109.47225 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00450 * 3 2 1 6 6 H 1.48498 * 109.47306 * 239.99734 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47525 * 180.02562 * 9 7 2 11 11 S 1.81402 * 109.47096 * 179.97438 * 10 9 7 12 12 C 1.81398 * 102.99878 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47497 * 180.02562 * 12 11 10 14 14 C 1.52993 * 109.47588 * 180.02562 * 13 12 11 15 15 H 1.08999 * 110.75189 * 57.01499 * 14 13 12 16 16 C 1.55300 * 110.84849 * 180.71446 * 14 13 12 17 17 C 1.54948 * 100.94363 * 152.32193 * 16 14 13 18 18 O 1.43644 * 105.13683 * 323.55836 * 17 16 14 19 19 C 1.43240 * 109.96994 * 24.42359 * 18 17 16 20 20 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 21 21 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 22 22 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 23 23 H 1.08995 * 109.46838 * 299.99933 * 10 9 7 24 24 H 1.09001 * 109.47054 * 59.99908 * 10 9 7 25 25 H 1.08996 * 109.47487 * 300.00179 * 12 11 10 26 26 H 1.09004 * 109.47110 * 60.00192 * 12 11 10 27 27 H 1.09004 * 109.46602 * 300.00176 * 13 12 11 28 28 H 1.08996 * 109.47077 * 59.99623 * 13 12 11 29 29 H 1.09003 * 111.12710 * 270.24174 * 16 14 13 30 30 H 1.09000 * 111.12523 * 34.40510 * 16 14 13 31 31 H 1.09002 * 110.31323 * 204.63769 * 17 16 14 32 32 H 1.09001 * 110.30979 * 82.47040 * 17 16 14 33 33 H 1.09005 * 109.82800 * 238.77731 * 19 18 17 34 34 H 1.09001 * 109.90470 * 117.84745 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6966 -1.2124 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 6 2.2455 -3.6620 0.0183 11 16 1.3385 -5.2330 0.0271 12 6 2.6652 -6.4700 0.0326 13 6 2.0546 -7.8729 0.0397 14 6 3.1735 -8.9162 0.0450 15 1 3.8344 -8.7694 0.8992 16 6 2.5881 -10.3546 0.0341 17 6 3.7310 -11.1321 -0.6660 18 8 4.2469 -10.2291 -1.6568 19 6 3.9684 -8.8761 -1.2779 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6248 -2.5524 0.9029 22 1 0.6241 -2.5613 -0.8770 23 1 2.8721 -3.6088 -0.8720 24 1 2.8721 -3.5996 0.9080 25 1 3.2808 -6.3467 -0.8584 26 1 3.2820 -6.3374 0.9215 27 1 1.4388 -7.9965 0.9306 28 1 1.4380 -8.0052 -0.8493 29 1 2.4274 -10.7210 1.0481 30 1 1.6679 -10.3998 -0.5484 31 1 3.3406 -12.0322 -1.1410 32 1 4.5089 -11.3897 0.0527 33 1 3.3741 -8.3902 -2.0518 34 1 4.9016 -8.3319 -1.1321 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331489949.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:11 Heat of formation + Delta-G solvation = -100.789406 kcal Electronic energy + Delta-G solvation = -13471.496632 eV Core-core repulsion = 11107.446504 eV Total energy + Delta-G solvation = -2364.050127 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.47229 -36.20717 -35.77093 -32.75924 -31.78286 -29.38073 -26.92619 -25.15521 -23.57825 -22.88736 -21.33764 -19.02293 -17.83228 -17.38231 -16.83452 -16.14762 -15.76118 -15.66167 -15.43643 -15.25731 -14.55073 -14.45174 -14.10582 -13.52471 -13.38173 -12.90927 -12.66609 -12.46050 -12.31074 -12.24365 -11.93572 -11.79306 -11.71284 -11.62467 -10.97362 -10.69156 -10.60438 -10.51656 -8.75162 -8.74767 -6.47950 0.68334 1.52727 1.61426 1.67521 1.80941 2.55683 2.92654 3.10634 3.39856 3.66769 3.88334 4.02883 4.06876 4.09043 4.19027 4.26891 4.35002 4.44518 4.55492 4.68344 4.73032 4.80487 4.88297 4.92388 5.00157 5.07876 5.11029 5.20675 5.27897 5.84000 6.02038 6.08851 6.46070 7.35236 8.65120 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.072607 B = 0.003778 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.542695 B = 7409.718788 C = 7656.092123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.037 4.037 3 Si 1.123 2.877 4 H -0.283 1.283 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.620 4.620 8 H 0.059 0.941 9 C 0.028 3.972 10 C -0.042 4.042 11 S -0.325 6.325 12 C -0.073 4.073 13 C -0.082 4.082 14 C -0.110 4.110 15 H 0.099 0.901 16 C -0.147 4.147 17 C 0.044 3.956 18 O -0.412 6.412 19 C 0.048 3.952 20 H 0.255 0.745 21 H -0.007 1.007 22 H -0.007 1.007 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.390 -20.564 1.022 22.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.235 4.235 3 Si 0.942 3.058 4 H -0.209 1.209 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.659 4.659 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.190 4.190 11 S -0.097 6.097 12 C -0.221 4.221 13 C -0.121 4.121 14 C -0.130 4.130 15 H 0.117 0.883 16 C -0.184 4.184 17 C -0.032 4.032 18 O -0.332 6.332 19 C -0.028 4.028 20 H 0.064 0.936 21 H 0.012 0.988 22 H 0.011 0.989 23 H 0.093 0.907 24 H 0.094 0.906 25 H 0.103 0.897 26 H 0.108 0.892 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.122 0.878 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.210 -19.173 0.838 20.501 hybrid contribution 0.959 -1.238 0.097 1.569 sum 8.169 -20.410 0.935 22.004 Atomic orbital electron populations 1.70914 1.08089 1.29899 1.48198 1.27591 0.96538 1.07054 0.92320 0.82882 0.74078 0.70554 0.78244 1.20858 1.19082 1.19116 1.22392 0.94947 0.92557 1.56049 0.92306 1.18855 0.94399 0.92938 0.94837 1.23156 0.99759 0.92274 1.03807 1.86926 1.20696 1.03863 1.98201 1.23449 0.97758 0.95333 1.05551 1.21232 0.97403 0.89737 1.03737 1.22708 0.96862 0.95085 0.98392 0.88276 1.23329 0.98793 0.93203 1.03117 1.23572 0.95371 0.93382 0.90870 1.88374 1.80684 1.16497 1.47692 1.23328 0.99563 0.83674 0.96277 0.93593 0.98839 0.98910 0.90750 0.90621 0.89663 0.89181 0.90171 0.91165 0.87841 0.90200 0.88686 0.91099 0.91627 0.91029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.03 13.65 21.45 0.29 -58.74 16 2 C -0.04 -2.18 5.46 84.65 0.46 -1.72 16 3 Si 1.12 49.92 29.90 68.60 2.05 51.97 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 6 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 7 C -0.62 -35.77 9.11 25.60 0.23 -35.54 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.03 1.51 4.29 29.85 0.13 1.64 16 10 C -0.04 -1.79 5.88 71.98 0.42 -1.36 16 11 S -0.32 -11.76 21.74 -56.49 -1.23 -12.99 16 12 C -0.07 -1.77 5.79 71.98 0.42 -1.36 16 13 C -0.08 -1.59 4.61 30.59 0.14 -1.45 16 14 C -0.11 -1.69 3.03 -9.54 -0.03 -1.72 16 15 H 0.10 1.33 8.14 -2.39 -0.02 1.32 16 16 C -0.15 -1.86 6.62 32.05 0.21 -1.64 16 17 C 0.04 0.62 7.78 72.65 0.56 1.19 16 18 O -0.41 -8.79 11.36 -148.98 -1.69 -10.48 16 19 C 0.05 0.89 6.57 72.45 0.48 1.37 16 20 H 0.25 16.44 7.22 -92.70 -0.67 15.77 16 21 H -0.01 -0.39 8.01 -2.38 -0.02 -0.41 16 22 H -0.01 -0.43 8.00 -2.39 -0.02 -0.45 16 23 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 24 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 25 H 0.08 1.97 7.48 -2.39 -0.02 1.96 16 26 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 28 H 0.07 1.45 8.07 -2.39 -0.02 1.43 16 29 H 0.10 0.93 8.14 -2.39 -0.02 0.92 16 30 H 0.08 1.05 8.04 -2.39 -0.02 1.04 16 31 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 1.30 7.73 -2.38 -0.02 1.29 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -67.89 292.68 3.59 -64.29 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 1.14 Total: 6.55 kcal Atomic # 6 Polarization: -43.63 SS G_CDS: 3.03 Total: -40.60 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: 0.29 Total: -58.74 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -1.69 Total: -10.48 kcal Atomic # 14 Polarization: 49.92 SS G_CDS: 2.05 Total: 51.97 kcal Atomic # 16 Polarization: -11.76 SS G_CDS: -1.23 Total: -12.99 kcal Total: -67.89 3.59 -64.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331489949.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.496 kcal (2) G-P(sol) polarization free energy of solvation -67.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds