Wall clock time and date at job start Sun Mar 29 2020 21:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86804 * 119.99893 * 2 1 4 4 H 1.48504 * 109.46704 * 269.99565 * 3 2 1 5 5 H 1.48490 * 109.47183 * 29.99938 * 3 2 1 6 6 H 1.48497 * 109.46858 * 149.99881 * 3 2 1 7 7 C 1.37878 * 119.99761 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99887 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99894 * 0.02562 * 7 2 1 10 10 S 1.81409 * 109.46957 * 179.97438 * 9 7 2 11 11 O 1.42105 * 108.57552 * 65.51160 * 10 9 7 12 12 O 1.42093 * 108.57638 * 294.48532 * 10 9 7 13 13 C 1.81401 * 101.92022 * 179.97438 * 10 9 7 14 14 C 1.50698 * 109.47040 * 180.02562 * 13 10 9 15 15 C 1.39874 * 126.04031 * 270.00044 * 14 13 10 16 16 N 1.30836 * 108.20052 * 179.73886 * 15 14 13 17 17 N 1.40084 * 108.20904 * 0.40640 * 16 15 14 18 18 H 0.97001 * 126.04219 * 179.85882 * 17 16 15 19 19 C 1.34947 * 107.92164 * 359.58781 * 17 16 15 20 20 H 0.97005 * 119.99586 * 0.02562 * 1 2 3 21 21 H 1.09007 * 109.47691 * 59.99787 * 9 7 2 22 22 H 1.08997 * 109.47451 * 299.99769 * 9 7 2 23 23 H 1.09007 * 109.47331 * 60.00237 * 13 10 9 24 24 H 1.09002 * 109.47159 * 300.00161 * 13 10 9 25 25 H 1.08001 * 125.89534 * 0.02562 * 15 14 13 26 26 H 1.08006 * 126.12506 * 180.22115 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 16 2.4298 -3.8780 0.0005 11 8 3.1484 -3.8592 1.2264 12 8 3.1483 -3.8593 -1.2252 13 6 1.3242 -5.3161 0.0013 14 6 2.1444 -6.5803 0.0021 15 6 2.5924 -7.2713 -1.1286 16 7 3.2750 -8.3128 -0.7272 17 7 3.2752 -8.3227 0.6736 18 1 3.7044 -8.9832 1.2397 19 6 2.5778 -7.2476 1.0966 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 0.6950 -5.2913 -0.8885 24 1 0.6956 -5.2907 0.8915 25 1 2.4105 -6.9907 -2.1555 26 1 2.3975 -6.9697 2.1246 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332034955.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:37 Heat of formation + Delta-G solvation = -4.514390 kcal Electronic energy + Delta-G solvation = -13768.615570 eV Core-core repulsion = 11169.366803 eV Total energy + Delta-G solvation = -2599.248767 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.051 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.18135 -35.92122 -34.97431 -33.31403 -32.69382 -31.20485 -29.04882 -26.76991 -23.44036 -22.04301 -20.29103 -18.18013 -17.70919 -16.77468 -15.83297 -15.16166 -15.04632 -14.46429 -14.37884 -14.18865 -13.32981 -13.14466 -12.46721 -12.13847 -12.06822 -11.36813 -11.06849 -10.99762 -10.87792 -10.79662 -10.64154 -10.47919 -9.78318 -9.68179 -9.15747 -8.68335 -8.33353 -6.30697 -4.39537 0.95190 1.87330 2.78916 2.84773 3.23965 3.29192 3.35748 3.91043 4.25400 4.50535 4.67308 4.88914 4.96060 5.07327 5.27833 5.50475 5.59369 5.86390 5.98580 6.55067 6.68872 6.73882 7.18555 7.51606 7.57494 7.78547 8.62780 9.27297 10.81220 Molecular weight = 230.05amu Principal moments of inertia in cm(-1) A = 0.068758 B = 0.006446 C = 0.006377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.125389 B = 4342.619256 C = 4389.463904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.074 3.926 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.528 4.528 8 H 0.071 0.929 9 C -0.407 4.407 10 S 2.393 3.607 11 O -0.959 6.959 12 O -0.956 6.956 13 C -0.543 4.543 14 C -0.232 4.232 15 C 0.069 3.931 16 N -0.297 5.297 17 N -0.477 5.477 18 H 0.440 0.560 19 C 0.076 3.924 20 H 0.268 0.732 21 H 0.085 0.915 22 H 0.084 0.916 23 H 0.134 0.866 24 H 0.130 0.870 25 H 0.191 0.809 26 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.369 -12.177 2.012 12.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.567 4.567 8 H 0.089 0.911 9 C -0.542 4.542 10 S 2.579 3.421 11 O -0.957 6.957 12 O -0.953 6.953 13 C -0.668 4.668 14 C -0.244 4.244 15 C -0.119 4.119 16 N -0.119 5.119 17 N -0.185 5.185 18 H 0.284 0.716 19 C -0.073 4.073 20 H 0.077 0.923 21 H 0.103 0.897 22 H 0.102 0.898 23 H 0.152 0.848 24 H 0.149 0.851 25 H 0.207 0.793 26 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 1.803 -13.137 1.641 13.361 hybrid contribution -0.913 1.190 0.592 1.612 sum 0.890 -11.947 2.233 12.187 Atomic orbital electron populations 1.69952 1.06223 1.27630 1.48103 1.24935 0.95025 0.99574 0.93643 0.86365 0.80025 0.81794 0.78742 1.19926 1.20695 1.19104 1.20373 0.92954 0.88555 1.54797 0.91055 1.27553 1.09958 1.10101 1.06586 1.09033 0.79843 0.78195 0.75069 1.93447 1.70141 1.86156 1.45909 1.93460 1.70049 1.86050 1.45734 1.28889 1.13837 1.12891 1.11191 1.19250 1.11018 1.01361 0.92807 1.23972 0.95578 0.92063 1.00295 1.77314 1.23305 1.22501 0.88775 1.46254 1.43779 1.22565 1.05921 0.71569 1.22531 0.95452 0.88938 1.00376 0.92272 0.89707 0.89771 0.84816 0.85122 0.79261 0.79865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.71 13.29 55.43 0.74 -23.98 15 2 C 0.07 2.03 5.46 -17.82 -0.10 1.93 15 3 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 15 4 H -0.27 -6.24 7.11 56.52 0.40 -5.83 15 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 7 C -0.53 -14.56 9.13 -34.44 -0.31 -14.87 15 8 H 0.07 1.97 7.71 -52.49 -0.40 1.56 15 9 C -0.41 -9.47 5.56 36.00 0.20 -9.27 15 10 S 2.39 48.50 4.62 -107.50 -0.50 48.01 15 11 O -0.96 -21.91 18.10 -57.83 -1.05 -22.95 15 12 O -0.96 -22.21 18.10 -57.83 -1.05 -23.26 15 13 C -0.54 -7.87 6.29 36.00 0.23 -7.64 15 14 C -0.23 -3.45 5.36 -105.05 -0.56 -4.01 15 15 C 0.07 1.02 11.96 -17.36 -0.21 0.81 15 16 N -0.30 -4.36 12.70 30.63 0.39 -3.97 15 17 N -0.48 -5.65 7.36 30.45 0.22 -5.42 15 18 H 0.44 3.42 8.96 -182.61 -1.64 1.78 15 19 C 0.08 0.97 11.90 -17.22 -0.21 0.76 15 20 H 0.27 7.01 8.31 -40.82 -0.34 6.67 15 21 H 0.08 1.91 8.14 -51.92 -0.42 1.49 15 22 H 0.08 1.89 8.14 -51.93 -0.42 1.46 15 23 H 0.13 1.64 8.14 -51.92 -0.42 1.21 15 24 H 0.13 1.55 8.14 -51.92 -0.42 1.13 15 25 H 0.19 2.36 8.06 -52.49 -0.42 1.94 15 26 H 0.18 1.73 8.06 -52.48 -0.42 1.30 15 LS Contribution 254.34 15.07 3.83 3.83 Total: -1.00 -35.90 254.34 -7.10 -43.00 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -3.71 Total: 1.03 kcal Atomic # 6 Polarization: -31.34 SS G_CDS: -0.96 Total: -32.30 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 1.35 Total: -33.37 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -2.09 Total: -46.21 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 48.50 SS G_CDS: -0.50 Total: 48.01 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -35.90 -7.10 -43.00 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332034955.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.483 kcal (2) G-P(sol) polarization free energy of solvation -35.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds