Wall clock time and date at job start Sun Mar 29 2020 21:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86804 * 119.99893 * 2 1 4 4 H 1.48504 * 109.46704 * 269.99565 * 3 2 1 5 5 H 1.48490 * 109.47183 * 29.99938 * 3 2 1 6 6 H 1.48497 * 109.46858 * 149.99881 * 3 2 1 7 7 C 1.37878 * 119.99761 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99887 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99894 * 0.02562 * 7 2 1 10 10 S 1.81409 * 109.46957 * 179.97438 * 9 7 2 11 11 O 1.42105 * 108.57552 * 65.51160 * 10 9 7 12 12 O 1.42093 * 108.57638 * 294.48532 * 10 9 7 13 13 C 1.81401 * 101.92022 * 179.97438 * 10 9 7 14 14 C 1.50698 * 109.47040 * 180.02562 * 13 10 9 15 15 C 1.39874 * 126.04031 * 270.00044 * 14 13 10 16 16 N 1.30836 * 108.20052 * 179.73886 * 15 14 13 17 17 N 1.40084 * 108.20904 * 0.40640 * 16 15 14 18 18 H 0.97001 * 126.04219 * 179.85882 * 17 16 15 19 19 C 1.34947 * 107.92164 * 359.58781 * 17 16 15 20 20 H 0.97005 * 119.99586 * 0.02562 * 1 2 3 21 21 H 1.09007 * 109.47691 * 59.99787 * 9 7 2 22 22 H 1.08997 * 109.47451 * 299.99769 * 9 7 2 23 23 H 1.09007 * 109.47331 * 60.00237 * 13 10 9 24 24 H 1.09002 * 109.47159 * 300.00161 * 13 10 9 25 25 H 1.08001 * 125.89534 * 0.02562 * 15 14 13 26 26 H 1.08006 * 126.12506 * 180.22115 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 16 2.4298 -3.8780 0.0005 11 8 3.1484 -3.8592 1.2264 12 8 3.1483 -3.8593 -1.2252 13 6 1.3242 -5.3161 0.0013 14 6 2.1444 -6.5803 0.0021 15 6 2.5924 -7.2713 -1.1286 16 7 3.2750 -8.3128 -0.7272 17 7 3.2752 -8.3227 0.6736 18 1 3.7044 -8.9832 1.2397 19 6 2.5778 -7.2476 1.0966 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 0.6950 -5.2913 -0.8885 24 1 0.6956 -5.2907 0.8915 25 1 2.4105 -6.9907 -2.1555 26 1 2.3975 -6.9697 2.1246 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332034955.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:37 Heat of formation + Delta-G solvation = -33.401747 kcal Electronic energy + Delta-G solvation = -13769.868220 eV Core-core repulsion = 11169.366803 eV Total energy + Delta-G solvation = -2600.501417 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.051 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.20644 -37.62510 -36.67574 -35.33046 -33.81300 -32.24722 -30.96184 -27.94620 -25.38681 -23.08639 -21.36884 -19.63019 -19.06732 -18.58598 -17.46775 -16.79147 -16.71786 -15.94971 -15.50366 -15.47798 -14.47007 -14.41518 -14.25165 -13.91623 -13.33856 -13.19588 -12.81399 -12.73118 -12.66785 -12.49860 -12.04780 -11.81463 -11.68363 -10.91465 -10.72935 -10.70590 -9.48861 -8.36534 -6.51480 -0.60890 0.86640 1.39308 1.40077 1.52082 1.69656 1.96543 2.32103 2.37524 2.97408 3.08862 3.39595 3.65984 3.96889 4.07073 4.40462 4.56505 4.78508 4.87793 4.88221 4.94991 5.42076 5.49261 5.82372 6.33135 6.58199 6.59089 7.18297 8.75697 Molecular weight = 230.05amu Principal moments of inertia in cm(-1) A = 0.068758 B = 0.006446 C = 0.006377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.125389 B = 4342.619256 C = 4389.463904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.958 3.042 4 H -0.266 1.266 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.561 4.561 8 H 0.056 0.944 9 C -0.431 4.431 10 S 2.402 3.598 11 O -0.992 6.992 12 O -0.995 6.995 13 C -0.499 4.499 14 C -0.270 4.270 15 C 0.056 3.944 16 N -0.322 5.322 17 N -0.464 5.464 18 H 0.457 0.543 19 C 0.092 3.908 20 H 0.273 0.727 21 H 0.085 0.915 22 H 0.087 0.913 23 H 0.162 0.838 24 H 0.168 0.832 25 H 0.202 0.798 26 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.037 -13.375 2.706 13.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.178 4.178 3 Si 0.781 3.219 4 H -0.191 1.191 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.600 4.600 8 H 0.075 0.925 9 C -0.563 4.563 10 S 2.593 3.407 11 O -0.989 6.989 12 O -0.992 6.992 13 C -0.631 4.631 14 C -0.284 4.284 15 C -0.131 4.131 16 N -0.144 5.144 17 N -0.173 5.173 18 H 0.305 0.695 19 C -0.059 4.059 20 H 0.082 0.918 21 H 0.103 0.897 22 H 0.105 0.895 23 H 0.180 0.820 24 H 0.185 0.815 25 H 0.219 0.781 26 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 1.433 -14.267 2.335 14.528 hybrid contribution -0.788 1.355 0.416 1.621 sum 0.644 -12.912 2.750 13.218 Atomic orbital electron populations 1.70008 1.07210 1.28650 1.48704 1.25761 0.95977 1.02834 0.93270 0.85548 0.78916 0.78275 0.79177 1.19100 1.19212 1.19152 1.20783 0.92861 0.91232 1.55100 0.92544 1.27667 1.10951 1.11113 1.06531 1.08433 0.79692 0.78944 0.73594 1.93392 1.71583 1.87161 1.46776 1.93402 1.71684 1.87133 1.46997 1.28408 1.11989 1.07999 1.14656 1.19441 1.13167 1.02013 0.93731 1.24330 0.95379 0.92138 1.01262 1.77278 1.23907 1.22955 0.90270 1.46347 1.42906 1.22706 1.05348 0.69495 1.23139 0.93328 0.87964 1.01506 0.91831 0.89707 0.89481 0.81968 0.81466 0.78083 0.76435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.23 13.29 21.45 0.28 -50.95 15 2 C 0.02 1.34 5.46 84.65 0.46 1.80 15 3 Si 0.96 43.27 29.54 68.60 2.03 45.29 15 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 15 5 H -0.27 -11.38 7.11 99.48 0.71 -10.67 15 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 15 7 C -0.56 -31.70 9.13 25.60 0.23 -31.47 15 8 H 0.06 3.23 7.71 -2.91 -0.02 3.21 15 9 C -0.43 -20.25 5.56 71.23 0.40 -19.86 15 10 S 2.40 96.15 4.62 -56.49 -0.26 95.89 15 11 O -0.99 -44.97 18.10 -127.37 -2.30 -47.27 15 12 O -0.99 -46.66 18.10 -127.37 -2.31 -48.96 15 13 C -0.50 -12.84 6.29 71.24 0.45 -12.39 15 14 C -0.27 -7.18 5.36 -20.14 -0.11 -7.29 15 15 C 0.06 1.54 11.96 85.24 1.02 2.56 15 16 N -0.32 -8.74 12.70 -57.02 -0.72 -9.47 15 17 N -0.46 -9.54 7.36 -57.59 -0.42 -9.96 15 18 H 0.46 5.65 8.96 -213.33 -1.91 3.74 15 19 C 0.09 1.98 11.90 83.54 0.99 2.98 15 20 H 0.27 14.29 8.31 -92.70 -0.77 13.52 15 21 H 0.08 3.88 8.14 -2.39 -0.02 3.86 15 22 H 0.09 3.93 8.14 -2.39 -0.02 3.91 15 23 H 0.16 3.36 8.14 -2.39 -0.02 3.34 15 24 H 0.17 3.18 8.14 -2.39 -0.02 3.16 15 25 H 0.20 4.69 8.06 -2.91 -0.02 4.67 15 26 H 0.22 3.03 8.06 -2.91 -0.02 3.01 15 Total: -1.00 -78.48 254.34 -0.97 -79.45 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -0.71 Total: 9.63 kcal Atomic # 6 Polarization: -67.10 SS G_CDS: 3.45 Total: -63.66 kcal Atomic # 7 Polarization: -69.51 SS G_CDS: -0.86 Total: -70.37 kcal Atomic # 8 Polarization: -91.62 SS G_CDS: -4.61 Total: -96.23 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: 96.15 SS G_CDS: -0.26 Total: 95.89 kcal Total: -78.48 -0.97 -79.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332034955.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.052 kcal (2) G-P(sol) polarization free energy of solvation -78.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds