Wall clock time and date at job start Sun Mar 29 2020 21:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 113.99827 * 2 1 4 4 C 1.52998 * 109.47290 * 180.02562 * 3 2 1 5 5 H 1.09005 * 110.87434 * 57.39089 * 4 3 2 6 6 C 1.55136 * 110.99120 * 293.55165 * 4 3 2 7 7 C 1.54325 * 103.01885 * 206.25294 * 6 4 3 8 8 N 1.47445 * 107.23174 * 22.28050 * 7 6 4 9 9 C 1.46896 * 110.99760 * 123.25993 * 8 7 6 10 10 C 1.53002 * 109.47246 * 69.87100 * 9 8 7 11 11 H 1.09000 * 109.46986 * 60.00111 * 10 9 8 12 12 O 1.42895 * 109.47308 * 299.99726 * 10 9 8 13 13 C 1.50706 * 109.46931 * 179.97438 * 10 9 8 14 14 H 1.07999 * 120.00193 * 0.02562 * 13 10 9 15 15 C 1.37879 * 119.99398 * 180.02562 * 13 10 9 16 16 N 1.31514 * 119.99350 * 180.02562 * 15 13 10 17 17 Si 1.86798 * 120.00608 * 0.02562 * 15 13 10 18 18 H 1.48493 * 109.47326 * 270.00340 * 17 15 13 19 19 H 1.48506 * 109.46545 * 30.00090 * 17 15 13 20 20 H 1.48498 * 109.47210 * 149.99801 * 17 15 13 21 21 C 1.47837 * 108.56878 * 0.99264 * 8 7 6 22 22 H 1.08996 * 109.47374 * 59.99903 * 1 2 3 23 23 H 1.09008 * 109.46839 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46958 * 299.99519 * 1 2 3 25 25 H 1.09008 * 109.47009 * 60.00241 * 3 2 1 26 26 H 1.09005 * 109.47513 * 300.00404 * 3 2 1 27 27 H 1.08998 * 110.71303 * 87.87125 * 6 4 3 28 28 H 1.09000 * 110.85827 * 324.70041 * 6 4 3 29 29 H 1.08997 * 109.88580 * 262.87408 * 7 6 4 30 30 H 1.09000 * 110.02121 * 141.76351 * 7 6 4 31 31 H 1.09004 * 109.47535 * 309.87247 * 9 8 7 32 32 H 1.09004 * 109.47041 * 189.87286 * 9 8 7 33 33 H 0.96698 * 114.00355 * 300.00260 * 12 10 9 34 34 H 0.97005 * 119.99661 * 179.97438 * 16 15 13 35 35 H 1.09000 * 110.37705 * 94.73151 * 21 8 7 36 36 H 1.08997 * 110.37548 * 217.07594 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8789 0.6070 -0.8588 6 6 4.0443 0.5637 1.3268 7 6 5.4767 1.1254 1.4468 8 7 5.5352 2.3507 0.6288 9 6 5.9578 3.5029 1.4361 10 6 7.4320 3.3473 1.8146 11 1 8.0363 3.2972 0.9088 12 8 7.6058 2.1470 2.5702 13 6 7.8656 4.5297 2.6424 14 1 7.1601 5.3135 2.8756 15 6 9.1630 4.6107 3.1020 16 7 9.5412 5.6423 3.8248 17 14 10.3835 3.2555 2.6981 18 1 10.3365 2.2153 3.7568 19 1 10.0320 2.6467 1.3900 20 1 11.7521 3.8272 2.6262 21 6 4.2028 2.5823 0.0316 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6886 1.8463 0.8901 26 1 1.6885 1.8464 -0.8900 27 1 4.0612 -0.5243 1.2619 28 1 3.4313 0.8887 2.1674 29 1 6.1939 0.3950 1.0725 30 1 5.6984 1.3631 2.4872 31 1 5.3535 3.5531 2.3420 32 1 5.8252 4.4186 0.8598 33 1 7.0962 2.1220 3.3916 34 1 10.4539 5.6992 4.1484 35 1 3.6226 3.2656 0.6518 36 1 4.3034 2.9782 -0.9789 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333103339.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:09 Heat of formation + Delta-G solvation = -92.581235 kcal Electronic energy + Delta-G solvation = -16508.636046 eV Core-core repulsion = 13799.907643 eV Total energy + Delta-G solvation = -2708.728403 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.22153 -37.70451 -35.87060 -32.28042 -32.20239 -29.56399 -28.28383 -27.00239 -25.12349 -23.78676 -21.11049 -20.46851 -19.89303 -17.25198 -16.75090 -16.09568 -15.52631 -15.35827 -14.85859 -14.49097 -14.09290 -13.93947 -13.31632 -12.97166 -12.67910 -12.47594 -12.11331 -11.83942 -11.65454 -11.56450 -11.00673 -10.88234 -10.72515 -10.64813 -10.43347 -10.27325 -9.82073 -9.76433 -9.11524 -8.64416 -8.36411 -7.79606 -6.12467 -4.24472 3.48303 3.51069 3.54472 3.66138 4.40854 4.52712 4.75076 4.90681 5.00307 5.08503 5.12718 5.17785 5.28353 5.36231 5.41398 5.55119 5.57521 5.76286 5.83139 5.99219 6.02751 6.11868 6.15171 6.32886 6.41690 6.57886 6.69187 6.97579 7.29122 7.49105 7.53576 7.76065 8.27566 8.82176 9.00297 9.51443 10.97887 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.065652 B = 0.005319 C = 0.005140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.388368 B = 5262.642282 C = 5446.587583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.072 3.928 4 C -0.097 4.097 5 H 0.089 0.911 6 C -0.134 4.134 7 C 0.050 3.950 8 N -0.527 5.527 9 C 0.037 3.963 10 C 0.198 3.802 11 H 0.068 0.932 12 O -0.581 6.581 13 C -0.563 4.563 14 H 0.072 0.928 15 C 0.082 3.918 16 N -0.894 5.894 17 Si 0.916 3.084 18 H -0.279 1.279 19 H -0.265 1.265 20 H -0.307 1.307 21 C 0.049 3.951 22 H 0.039 0.961 23 H 0.084 0.916 24 H 0.039 0.961 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.029 0.971 32 H 0.071 0.929 33 H 0.355 0.645 34 H 0.265 0.735 35 H 0.042 0.958 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.442 -9.286 -6.505 19.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.005 4.005 4 C -0.116 4.116 5 H 0.107 0.893 6 C -0.172 4.172 7 C -0.077 4.077 8 N -0.251 5.251 9 C -0.091 4.091 10 C 0.140 3.860 11 H 0.086 0.914 12 O -0.388 6.388 13 C -0.601 4.601 14 H 0.090 0.910 15 C -0.123 4.123 16 N -0.532 5.532 17 Si 0.746 3.254 18 H -0.205 1.205 19 H -0.190 1.190 20 H -0.235 1.235 21 C -0.079 4.079 22 H 0.058 0.942 23 H 0.102 0.898 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.202 0.798 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.421 -9.555 -7.305 18.779 hybrid contribution -0.587 0.100 0.993 1.158 sum -15.008 -9.456 -6.312 18.828 Atomic orbital electron populations 1.22723 0.81363 1.02580 0.99849 1.87891 1.19352 1.28168 1.95381 1.22506 0.93534 0.84429 1.00012 1.22284 0.92101 0.97529 0.99704 0.89259 1.22857 0.97212 1.00932 0.96227 1.22919 0.94647 0.92278 0.97895 1.63576 1.24041 1.03958 1.33551 1.22924 0.99390 0.92054 0.94752 1.19918 0.90319 0.83393 0.92336 0.91448 1.86468 1.71891 1.43173 1.37223 1.21545 0.97585 1.06625 1.34339 0.91021 1.25026 0.98467 0.95474 0.93313 1.69966 1.18610 1.29635 1.34940 0.86197 0.77867 0.81122 0.80213 1.20534 1.19003 1.23488 1.22980 0.89776 0.94926 1.00187 0.94215 0.89760 0.94204 0.93345 0.93262 0.90964 0.92075 0.90778 0.91434 0.95275 0.91011 0.79765 0.92541 0.93952 0.90530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.59 10.56 -35.23 -0.37 -4.96 16 3 C 0.07 0.80 5.38 37.16 0.20 1.00 16 4 C -0.10 -1.24 3.32 -88.48 -0.29 -1.54 16 5 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 6 C -0.13 -1.82 6.27 -24.91 -0.16 -1.97 16 7 C 0.05 0.82 5.52 -2.83 -0.02 0.80 16 8 N -0.53 -9.29 5.16 -231.25 -1.19 -10.48 16 9 C 0.04 0.73 4.40 -3.83 -0.02 0.71 16 10 C 0.20 4.69 2.56 -27.88 -0.07 4.62 16 11 H 0.07 1.72 7.20 -51.93 -0.37 1.35 16 12 O -0.58 -13.09 8.65 -35.23 -0.30 -13.40 16 13 C -0.56 -15.69 9.34 -34.44 -0.32 -16.01 16 14 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 15 C 0.08 2.37 5.47 -17.82 -0.10 2.27 16 16 N -0.89 -27.34 13.96 55.43 0.77 -26.57 16 17 Si 0.92 23.53 26.18 -169.99 -4.45 19.08 16 18 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.27 -6.82 6.54 56.52 0.37 -6.45 16 20 H -0.31 -7.82 7.11 56.52 0.40 -7.42 16 21 C 0.05 0.70 6.15 -2.30 -0.01 0.69 16 22 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 23 H 0.08 0.58 8.14 -51.92 -0.42 0.15 16 24 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 25 H 0.05 0.52 8.11 -51.92 -0.42 0.10 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.81 8.02 -51.93 -0.42 0.39 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.07 1.14 5.19 -51.93 -0.27 0.87 16 31 H 0.03 0.57 7.96 -51.93 -0.41 0.16 16 32 H 0.07 1.43 8.07 -51.93 -0.42 1.01 16 33 H 0.36 7.12 7.92 45.56 0.36 7.48 16 34 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 35 H 0.04 0.59 7.70 -51.93 -0.40 0.19 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 286.29 15.07 4.31 4.31 Total: -1.00 -31.25 286.29 -6.23 -37.48 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -5.32 Total: 2.60 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: 0.33 Total: -8.06 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: -0.42 Total: -37.05 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.68 Total: -18.36 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -4.45 Total: 19.08 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.25 -6.23 -37.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333103339.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.104 kcal (2) G-P(sol) polarization free energy of solvation -31.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds