Wall clock time and date at job start Sun Mar 29 2020 21:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 113.99827 * 2 1 4 4 C 1.52998 * 109.47290 * 180.02562 * 3 2 1 5 5 H 1.09005 * 110.87434 * 57.39089 * 4 3 2 6 6 C 1.55136 * 110.99120 * 293.55165 * 4 3 2 7 7 C 1.54325 * 103.01885 * 206.25294 * 6 4 3 8 8 N 1.47445 * 107.23174 * 22.28050 * 7 6 4 9 9 C 1.46896 * 110.99760 * 123.25993 * 8 7 6 10 10 C 1.53002 * 109.47246 * 69.87100 * 9 8 7 11 11 H 1.09000 * 109.46986 * 60.00111 * 10 9 8 12 12 O 1.42895 * 109.47308 * 299.99726 * 10 9 8 13 13 C 1.50706 * 109.46931 * 179.97438 * 10 9 8 14 14 H 1.07999 * 120.00193 * 0.02562 * 13 10 9 15 15 C 1.37879 * 119.99398 * 180.02562 * 13 10 9 16 16 N 1.31514 * 119.99350 * 180.02562 * 15 13 10 17 17 Si 1.86798 * 120.00608 * 0.02562 * 15 13 10 18 18 H 1.48493 * 109.47326 * 270.00340 * 17 15 13 19 19 H 1.48506 * 109.46545 * 30.00090 * 17 15 13 20 20 H 1.48498 * 109.47210 * 149.99801 * 17 15 13 21 21 C 1.47837 * 108.56878 * 0.99264 * 8 7 6 22 22 H 1.08996 * 109.47374 * 59.99903 * 1 2 3 23 23 H 1.09008 * 109.46839 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46958 * 299.99519 * 1 2 3 25 25 H 1.09008 * 109.47009 * 60.00241 * 3 2 1 26 26 H 1.09005 * 109.47513 * 300.00404 * 3 2 1 27 27 H 1.08998 * 110.71303 * 87.87125 * 6 4 3 28 28 H 1.09000 * 110.85827 * 324.70041 * 6 4 3 29 29 H 1.08997 * 109.88580 * 262.87408 * 7 6 4 30 30 H 1.09000 * 110.02121 * 141.76351 * 7 6 4 31 31 H 1.09004 * 109.47535 * 309.87247 * 9 8 7 32 32 H 1.09004 * 109.47041 * 189.87286 * 9 8 7 33 33 H 0.96698 * 114.00355 * 300.00260 * 12 10 9 34 34 H 0.97005 * 119.99661 * 179.97438 * 16 15 13 35 35 H 1.09000 * 110.37705 * 94.73151 * 21 8 7 36 36 H 1.08997 * 110.37548 * 217.07594 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8789 0.6070 -0.8588 6 6 4.0443 0.5637 1.3268 7 6 5.4767 1.1254 1.4468 8 7 5.5352 2.3507 0.6288 9 6 5.9578 3.5029 1.4361 10 6 7.4320 3.3473 1.8146 11 1 8.0363 3.2972 0.9088 12 8 7.6058 2.1470 2.5702 13 6 7.8656 4.5297 2.6424 14 1 7.1601 5.3135 2.8756 15 6 9.1630 4.6107 3.1020 16 7 9.5412 5.6423 3.8248 17 14 10.3835 3.2555 2.6981 18 1 10.3365 2.2153 3.7568 19 1 10.0320 2.6467 1.3900 20 1 11.7521 3.8272 2.6262 21 6 4.2028 2.5823 0.0316 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6886 1.8463 0.8901 26 1 1.6885 1.8464 -0.8900 27 1 4.0612 -0.5243 1.2619 28 1 3.4313 0.8887 2.1674 29 1 6.1939 0.3950 1.0725 30 1 5.6984 1.3631 2.4872 31 1 5.3535 3.5531 2.3420 32 1 5.8252 4.4186 0.8598 33 1 7.0962 2.1220 3.3916 34 1 10.4539 5.6992 4.1484 35 1 3.6226 3.2656 0.6518 36 1 4.3034 2.9782 -0.9789 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333103339.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:09 Heat of formation + Delta-G solvation = -117.281052 kcal Electronic energy + Delta-G solvation = -16509.707110 eV Core-core repulsion = 13799.907643 eV Total energy + Delta-G solvation = -2709.799468 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.44143 -38.73732 -37.48980 -34.46868 -33.52313 -30.87957 -29.86147 -27.94070 -26.50633 -25.05564 -22.78450 -21.74929 -21.16563 -19.31527 -17.71034 -16.94021 -16.93364 -16.59949 -16.48700 -16.20754 -15.61402 -15.20815 -14.92756 -14.42401 -14.01713 -13.78519 -13.47513 -13.23062 -13.12081 -12.82881 -12.63700 -12.45428 -12.05052 -11.90443 -11.76304 -11.65300 -11.48658 -11.13636 -10.87858 -10.59566 -10.23001 -9.16713 -8.37255 -6.51999 1.42059 1.44171 1.60622 2.38650 2.72264 2.97482 3.16149 3.73520 3.85332 3.91824 4.03422 4.32040 4.35896 4.39397 4.42992 4.52149 4.52808 4.59559 4.63537 4.75015 4.84626 4.87023 4.99292 5.00900 5.17053 5.20908 5.39237 5.41026 5.52714 6.03865 6.17822 6.21019 6.27110 6.61103 7.14034 7.30381 8.76846 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.065652 B = 0.005319 C = 0.005140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.388368 B = 5262.642282 C = 5446.587583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.076 3.924 4 C -0.090 4.090 5 H 0.086 0.914 6 C -0.125 4.125 7 C 0.049 3.951 8 N -0.541 5.541 9 C 0.051 3.949 10 C 0.206 3.794 11 H 0.052 0.948 12 O -0.580 6.580 13 C -0.564 4.564 14 H 0.041 0.959 15 C 0.032 3.968 16 N -0.937 5.937 17 Si 0.977 3.023 18 H -0.274 1.274 19 H -0.265 1.265 20 H -0.303 1.303 21 C 0.049 3.951 22 H 0.051 0.949 23 H 0.096 0.904 24 H 0.047 0.953 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.030 0.970 32 H 0.069 0.931 33 H 0.368 0.632 34 H 0.269 0.731 35 H 0.049 0.951 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.686 -10.696 -7.263 21.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C -0.001 4.001 4 C -0.109 4.109 5 H 0.104 0.896 6 C -0.164 4.164 7 C -0.079 4.079 8 N -0.266 5.266 9 C -0.077 4.077 10 C 0.148 3.852 11 H 0.069 0.931 12 O -0.388 6.388 13 C -0.602 4.602 14 H 0.060 0.940 15 C -0.168 4.168 16 N -0.576 5.576 17 Si 0.805 3.195 18 H -0.200 1.200 19 H -0.190 1.190 20 H -0.231 1.231 21 C -0.078 4.078 22 H 0.070 0.930 23 H 0.114 0.886 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.048 0.952 32 H 0.087 0.913 33 H 0.217 0.783 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.690 -10.975 -8.064 20.777 hybrid contribution -0.279 0.545 1.229 1.373 sum -15.970 -10.430 -6.835 20.262 Atomic orbital electron populations 1.22917 0.79609 1.03755 1.00779 1.87846 1.21303 1.28443 1.95579 1.22435 0.92073 0.84569 1.01002 1.22199 0.93508 0.96185 0.98989 0.89585 1.22771 0.95386 1.01226 0.96968 1.22877 0.96264 0.91628 0.97100 1.63485 1.26531 1.03338 1.33228 1.22578 0.96854 0.93092 0.95176 1.19640 0.92559 0.82014 0.90948 0.93052 1.86400 1.72438 1.41965 1.37984 1.21858 0.96962 1.07232 1.34167 0.94038 1.25792 1.00331 0.97365 0.93346 1.70069 1.19306 1.31593 1.36664 0.85242 0.75864 0.78529 0.79890 1.19962 1.18955 1.23145 1.23031 0.88246 0.96144 1.00410 0.93047 0.88585 0.93482 0.92879 0.91754 0.90328 0.91546 0.91880 0.92168 0.95187 0.91271 0.78320 0.92260 0.93266 0.89600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.41 -8.67 10.56 -148.98 -1.57 -10.24 16 3 C 0.08 1.47 5.38 71.98 0.39 1.86 16 4 C -0.09 -2.08 3.32 -9.41 -0.03 -2.11 16 5 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 6 C -0.13 -3.13 6.27 31.78 0.20 -2.93 16 7 C 0.05 1.52 5.52 86.65 0.48 2.00 16 8 N -0.54 -18.29 5.16 -885.54 -4.57 -22.86 16 9 C 0.05 2.01 4.40 86.30 0.38 2.39 16 10 C 0.21 9.68 2.56 29.85 0.08 9.75 16 11 H 0.05 2.60 7.20 -2.39 -0.02 2.58 16 12 O -0.58 -25.41 8.65 -148.98 -1.29 -26.70 16 13 C -0.56 -31.72 9.34 25.60 0.24 -31.48 16 14 H 0.04 2.53 7.99 -2.91 -0.02 2.51 16 15 C 0.03 1.85 5.47 84.66 0.46 2.32 16 16 N -0.94 -58.02 13.96 21.45 0.30 -57.72 16 17 Si 0.98 48.43 26.18 68.60 1.80 50.22 16 18 H -0.27 -13.26 7.11 99.48 0.71 -12.56 16 19 H -0.26 -13.02 6.54 99.48 0.65 -12.37 16 20 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 21 C 0.05 1.30 6.15 86.78 0.53 1.83 16 22 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 23 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 24 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.05 0.98 8.11 -2.38 -0.02 0.96 16 26 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 27 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.07 1.60 8.02 -2.39 -0.02 1.58 16 29 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.06 1.94 5.19 -2.39 -0.01 1.93 16 31 H 0.03 1.16 7.96 -2.39 -0.02 1.14 16 32 H 0.07 2.71 8.07 -2.38 -0.02 2.69 16 33 H 0.37 14.28 7.92 -74.06 -0.59 13.69 16 34 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 35 H 0.05 1.24 7.70 -2.39 -0.02 1.23 16 36 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -65.71 286.29 -0.96 -66.67 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.40 Total: 15.42 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: 3.97 Total: -14.79 kcal Atomic # 7 Polarization: -76.31 SS G_CDS: -4.27 Total: -80.58 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -2.86 Total: -36.94 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 1.80 Total: 50.22 kcal Total: -65.71 -0.96 -66.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333103339.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.611 kcal (2) G-P(sol) polarization free energy of solvation -65.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds