Wall clock time and date at job start Sun Mar 29 2020 21:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99861 * 2 1 4 4 H 1.48499 * 109.47307 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46897 * 299.99450 * 3 2 1 6 6 H 1.48496 * 109.47603 * 59.99490 * 3 2 1 7 7 C 1.37875 * 120.00380 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00459 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99642 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46792 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.46858 * 180.02562 * 10 9 7 12 12 O 1.20825 * 120.00222 * 359.97438 * 11 10 9 13 13 O 1.34232 * 120.00265 * 180.02562 * 11 10 9 14 14 C 1.45202 * 117.00277 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.46882 * 180.02562 * 14 13 11 16 16 C 1.53042 * 113.14878 * 185.00155 * 15 14 13 17 17 S 1.81425 * 89.93235 * 211.82965 * 16 15 14 18 18 C 1.53039 * 113.15312 * 84.62434 * 15 14 13 19 19 H 0.96998 * 120.00269 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.46417 * 60.00445 * 9 7 2 21 21 H 1.08998 * 109.47001 * 300.00506 * 9 7 2 22 22 H 1.08996 * 109.47402 * 60.00062 * 10 9 7 23 23 H 1.09000 * 109.47050 * 300.00044 * 10 9 7 24 24 H 1.08999 * 109.46671 * 59.99691 * 14 13 11 25 25 H 1.08991 * 109.46602 * 299.99888 * 14 13 11 26 26 H 1.09002 * 112.52349 * 314.80704 * 15 14 13 27 27 H 1.09002 * 113.14805 * 327.10916 * 16 15 14 28 28 H 1.09003 * 113.15177 * 96.55360 * 16 15 14 29 29 H 1.08997 * 113.14758 * 263.40323 * 18 15 14 30 30 H 1.08997 * 113.15183 * 32.84975 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0027 11 6 1.4919 -4.9671 0.0033 12 8 0.2836 -4.9672 0.0033 13 8 2.1630 -6.1296 0.0047 14 6 1.3722 -7.3474 0.0046 15 6 2.3043 -8.5607 0.0070 16 6 1.5593 -9.8919 -0.1157 17 16 2.8348 -10.6962 0.8931 18 6 2.7733 -8.9564 1.4090 19 1 -0.4850 0.8400 -0.0004 20 1 0.6241 -2.5574 -0.8881 21 1 0.6247 -2.5562 0.8919 22 1 2.8720 -3.6035 0.8926 23 1 2.8720 -3.6050 -0.8873 24 1 0.7444 -7.3727 -0.8861 25 1 0.7425 -7.3717 0.8938 26 1 3.1224 -8.4601 -0.7062 27 1 0.5795 -9.8802 0.3619 28 1 1.5206 -10.2688 -1.1377 29 1 3.7520 -8.5499 1.6640 30 1 2.0279 -8.7638 2.1805 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344024915.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:18 Heat of formation + Delta-G solvation = -83.423702 kcal Electronic energy + Delta-G solvation = -13506.865385 eV Core-core repulsion = 11007.735196 eV Total energy + Delta-G solvation = -2499.130189 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.076 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.06926 -37.52971 -35.64066 -33.61239 -31.19595 -27.83018 -26.62835 -25.69452 -22.23714 -20.96359 -19.82239 -17.45306 -17.02144 -16.44568 -16.26513 -15.72310 -15.04041 -14.48001 -14.00048 -13.60241 -13.30323 -13.08116 -12.61778 -12.28179 -12.11528 -11.66896 -11.23527 -11.14526 -10.99614 -10.66286 -10.55905 -10.33269 -10.08131 -9.95750 -9.57733 -9.18844 -8.40511 -8.11240 -6.04046 -4.09005 1.44392 1.59077 2.76933 2.95821 3.29317 3.36915 3.40421 3.98103 4.38018 4.44111 4.55449 4.85664 4.94133 5.06220 5.24644 5.27646 5.31633 5.34423 5.54253 5.79600 6.08561 6.16170 6.59268 6.87901 7.63891 7.70060 7.95220 8.21240 8.36813 8.98372 9.55402 11.06986 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.085645 B = 0.003939 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 326.852306 B = 7106.799180 C = 7315.256075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.032 3.968 10 C -0.103 4.103 11 C 0.457 3.543 12 O -0.505 6.505 13 O -0.364 6.364 14 C 0.075 3.925 15 C -0.090 4.090 16 C -0.076 4.076 17 S -0.297 6.297 18 C -0.076 4.076 19 H 0.261 0.739 20 H 0.026 0.974 21 H 0.026 0.974 22 H 0.093 0.907 23 H 0.093 0.907 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.123 0.877 27 H 0.108 0.892 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.759 -17.205 0.364 17.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.567 4.567 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.141 4.141 11 C 0.301 3.699 12 O -0.392 6.392 13 O -0.282 6.282 14 C -0.002 4.002 15 C -0.109 4.109 16 C -0.224 4.224 17 S -0.071 6.071 18 C -0.224 4.224 19 H 0.071 0.929 20 H 0.044 0.956 21 H 0.044 0.956 22 H 0.111 0.889 23 H 0.111 0.889 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.141 0.859 27 H 0.127 0.873 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.901 -18.429 0.627 19.080 hybrid contribution -0.302 1.730 -0.124 1.761 sum 4.599 -16.699 0.503 17.328 Atomic orbital electron populations 1.69998 1.06106 1.26683 1.49996 1.25023 0.94854 0.99365 0.95097 0.86487 0.80038 0.83541 0.77634 1.19627 1.20954 1.20963 1.21194 0.93121 0.90619 1.51725 0.92229 1.19032 0.93249 0.89330 0.98907 1.21771 1.00678 0.87571 1.04054 1.24800 0.87950 0.85613 0.71575 1.90641 1.15908 1.87648 1.44965 1.86563 1.41929 1.14794 1.84936 1.22888 0.92841 0.81369 1.03107 1.22564 0.99016 0.92303 0.97051 1.24275 0.99893 0.94553 1.03717 1.89047 1.48896 1.17507 1.51621 1.24491 1.06530 0.91016 1.00350 0.92883 0.95569 0.95589 0.88908 0.88899 0.90551 0.90881 0.85914 0.87338 0.87943 0.87845 0.87477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.53 -14.56 9.11 -34.44 -0.31 -14.87 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.03 0.83 4.26 -27.88 -0.12 0.71 16 10 C -0.10 -2.03 5.75 -27.88 -0.16 -2.19 16 11 C 0.46 8.55 7.96 36.00 0.29 8.83 16 12 O -0.51 -11.04 15.73 -18.75 -0.29 -11.33 16 13 O -0.36 -5.45 10.22 -39.26 -0.40 -5.85 16 14 C 0.07 0.86 5.24 37.16 0.19 1.06 16 15 C -0.09 -0.79 3.69 -90.58 -0.33 -1.13 16 16 C -0.08 -0.59 7.49 37.18 0.28 -0.31 16 17 S -0.30 -3.01 24.80 -107.50 -2.67 -5.67 16 18 C -0.08 -0.67 7.49 37.18 0.28 -0.39 16 19 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 20 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 21 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 22 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 23 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 24 H 0.08 0.87 8.13 -51.93 -0.42 0.45 16 25 H 0.07 0.83 7.88 -51.93 -0.41 0.42 16 26 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.11 0.74 8.12 -51.93 -0.42 0.32 16 28 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.11 0.88 7.94 -51.93 -0.41 0.47 16 LS Contribution 276.39 15.07 4.17 4.17 Total: -1.00 -31.64 276.39 -7.63 -39.27 By element: Atomic # 1 Polarization: 0.14 SS G_CDS: -4.16 Total: -4.02 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 0.01 Total: -6.74 kcal Atomic # 7 Polarization: -26.72 SS G_CDS: 0.74 Total: -25.99 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.70 Total: -17.18 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -3.01 SS G_CDS: -2.67 Total: -5.67 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.64 -7.63 -39.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344024915.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.155 kcal (2) G-P(sol) polarization free energy of solvation -31.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds