Wall clock time and date at job start Sun Mar 29 2020 21:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99861 * 2 1 4 4 H 1.48499 * 109.47307 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46897 * 299.99450 * 3 2 1 6 6 H 1.48496 * 109.47603 * 59.99490 * 3 2 1 7 7 C 1.37875 * 120.00380 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00459 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99642 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46792 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.46858 * 180.02562 * 10 9 7 12 12 O 1.20825 * 120.00222 * 359.97438 * 11 10 9 13 13 O 1.34232 * 120.00265 * 180.02562 * 11 10 9 14 14 C 1.45202 * 117.00277 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.46882 * 180.02562 * 14 13 11 16 16 C 1.53042 * 113.14878 * 185.00155 * 15 14 13 17 17 S 1.81425 * 89.93235 * 211.82965 * 16 15 14 18 18 C 1.53039 * 113.15312 * 84.62434 * 15 14 13 19 19 H 0.96998 * 120.00269 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.46417 * 60.00445 * 9 7 2 21 21 H 1.08998 * 109.47001 * 300.00506 * 9 7 2 22 22 H 1.08996 * 109.47402 * 60.00062 * 10 9 7 23 23 H 1.09000 * 109.47050 * 300.00044 * 10 9 7 24 24 H 1.08999 * 109.46671 * 59.99691 * 14 13 11 25 25 H 1.08991 * 109.46602 * 299.99888 * 14 13 11 26 26 H 1.09002 * 112.52349 * 314.80704 * 15 14 13 27 27 H 1.09002 * 113.14805 * 327.10916 * 16 15 14 28 28 H 1.09003 * 113.15177 * 96.55360 * 16 15 14 29 29 H 1.08997 * 113.14758 * 263.40323 * 18 15 14 30 30 H 1.08997 * 113.15183 * 32.84975 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0027 11 6 1.4919 -4.9671 0.0033 12 8 0.2836 -4.9672 0.0033 13 8 2.1630 -6.1296 0.0047 14 6 1.3722 -7.3474 0.0046 15 6 2.3043 -8.5607 0.0070 16 6 1.5593 -9.8919 -0.1157 17 16 2.8348 -10.6962 0.8931 18 6 2.7733 -8.9564 1.4090 19 1 -0.4850 0.8400 -0.0004 20 1 0.6241 -2.5574 -0.8881 21 1 0.6247 -2.5562 0.8919 22 1 2.8720 -3.6035 0.8926 23 1 2.8720 -3.6050 -0.8873 24 1 0.7444 -7.3727 -0.8861 25 1 0.7425 -7.3717 0.8938 26 1 3.1224 -8.4601 -0.7062 27 1 0.5795 -9.8802 0.3619 28 1 1.5206 -10.2688 -1.1377 29 1 3.7520 -8.5499 1.6640 30 1 2.0279 -8.7638 2.1805 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344024915.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:18 Heat of formation + Delta-G solvation = -101.798299 kcal Electronic energy + Delta-G solvation = -13507.662167 eV Core-core repulsion = 11007.735196 eV Total energy + Delta-G solvation = -2499.926971 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.076 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.46713 -38.54126 -36.83919 -35.62374 -33.12415 -29.07291 -27.47286 -27.26042 -24.07006 -21.77775 -21.38472 -19.05796 -18.28450 -17.77929 -17.52324 -16.91184 -16.47852 -16.20266 -15.28231 -14.63465 -14.32250 -14.20460 -13.96564 -13.92873 -13.34937 -13.13050 -12.84489 -12.50912 -12.46522 -11.98673 -11.90638 -11.72190 -11.63189 -11.43357 -11.27140 -11.02725 -10.57048 -8.89989 -8.18698 -6.32046 0.75675 0.85335 1.28131 1.45103 1.45614 1.58983 1.73110 2.44502 3.15509 3.21822 3.59580 3.78450 4.00755 4.15835 4.29340 4.36007 4.41740 4.49435 4.51637 4.54468 4.68900 4.92241 5.04861 5.41083 5.50410 5.58392 5.82996 6.15358 6.82519 6.89787 7.38381 8.94062 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.085645 B = 0.003939 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 326.852306 B = 7106.799180 C = 7315.256075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.973 3.027 4 H -0.253 1.253 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.543 4.543 8 H 0.077 0.923 9 C 0.036 3.964 10 C -0.095 4.095 11 C 0.467 3.533 12 O -0.544 6.544 13 O -0.353 6.353 14 C 0.070 3.930 15 C -0.080 4.080 16 C -0.060 4.060 17 S -0.344 6.344 18 C -0.069 4.069 19 H 0.263 0.737 20 H -0.010 1.010 21 H -0.010 1.010 22 H 0.116 0.884 23 H 0.116 0.884 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.128 0.872 27 H 0.121 0.879 28 H 0.117 0.883 29 H 0.106 0.894 30 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.404 -17.414 0.223 18.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.797 3.203 4 H -0.177 1.177 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.580 4.580 8 H 0.096 0.904 9 C -0.001 4.001 10 C -0.133 4.133 11 C 0.313 3.687 12 O -0.434 6.434 13 O -0.270 6.270 14 C -0.006 4.006 15 C -0.100 4.100 16 C -0.208 4.208 17 S -0.117 6.117 18 C -0.217 4.217 19 H 0.072 0.928 20 H 0.009 0.991 21 H 0.009 0.991 22 H 0.134 0.866 23 H 0.134 0.866 24 H 0.099 0.901 25 H 0.094 0.906 26 H 0.146 0.854 27 H 0.139 0.861 28 H 0.136 0.864 29 H 0.125 0.875 30 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.585 -18.675 0.487 19.808 hybrid contribution -0.837 1.695 -0.078 1.892 sum 5.748 -16.979 0.409 17.931 Atomic orbital electron populations 1.70157 1.08196 1.27830 1.51399 1.26079 0.95711 1.03806 0.94594 0.85285 0.79336 0.78193 0.77509 1.17686 1.20692 1.20709 1.21692 0.94131 0.91341 1.50872 0.90441 1.18817 0.93757 0.92019 0.95506 1.21507 0.99311 0.86175 1.06279 1.24422 0.87088 0.86492 0.70734 1.90638 1.17496 1.88316 1.46959 1.86513 1.41665 1.14772 1.84024 1.23202 0.93399 0.80428 1.03588 1.22526 0.98787 0.91360 0.97296 1.24299 0.99432 0.92805 1.04230 1.89285 1.50455 1.19004 1.52990 1.24539 1.07015 0.89613 1.00530 0.92789 0.99118 0.99134 0.86607 0.86609 0.90145 0.90550 0.85389 0.86062 0.86415 0.87535 0.86714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.47 13.29 21.45 0.28 -57.18 16 2 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 3 Si 0.97 43.10 29.54 68.60 2.03 45.13 16 4 H -0.25 -10.38 7.11 99.48 0.71 -9.67 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.54 -29.72 9.11 25.60 0.23 -29.49 16 8 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 9 C 0.04 1.91 4.26 29.85 0.13 2.04 16 10 C -0.10 -3.65 5.75 29.85 0.17 -3.48 16 11 C 0.47 17.08 7.96 71.23 0.57 17.64 16 12 O -0.54 -24.00 15.73 21.97 0.35 -23.65 16 13 O -0.35 -9.84 10.22 -51.44 -0.53 -10.36 16 14 C 0.07 1.47 5.24 71.98 0.38 1.85 16 15 C -0.08 -1.22 3.69 -10.77 -0.04 -1.26 16 16 C -0.06 -0.78 7.49 72.00 0.54 -0.25 16 17 S -0.34 -6.45 24.80 -56.49 -1.40 -7.85 16 18 C -0.07 -1.09 7.49 72.00 0.54 -0.55 16 19 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 20 H -0.01 -0.57 8.10 -2.39 -0.02 -0.59 16 21 H -0.01 -0.58 8.10 -2.39 -0.02 -0.60 16 22 H 0.12 3.91 8.14 -2.39 -0.02 3.89 16 23 H 0.12 3.91 8.14 -2.39 -0.02 3.89 16 24 H 0.08 1.68 8.13 -2.39 -0.02 1.66 16 25 H 0.08 1.60 7.88 -2.39 -0.02 1.58 16 26 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.12 1.33 8.12 -2.39 -0.02 1.31 16 28 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.11 1.64 7.94 -2.39 -0.02 1.63 16 Total: -1.00 -69.11 276.39 4.82 -64.29 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: 1.12 Total: 2.90 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: 2.98 Total: -13.26 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: 0.28 Total: -57.18 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -0.18 Total: -34.02 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: -6.45 SS G_CDS: -1.40 Total: -7.85 kcal Total: -69.11 4.82 -64.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344024915.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.510 kcal (2) G-P(sol) polarization free energy of solvation -69.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds